Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche

Science

Volumn 348, Issue 6238, 2015, Pages 1019-1023

  Rosen, Michael J ^a   Davison, Michelle ^b   Bhaya, Devaki ^b   Fisher, Daniel S ^a,c  

^a STANFORD UNIVERSITY   (United States)

^b GEOPHYSICAL LABORATORY   (United States)

^c Stanford University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; BACTERIUM; CYANOBACTERIUM; GENETIC DIFFERENTIATION; GENOME; HOMOLOGY; NICHE; POLYMORPHISM; POPULATION STRUCTURE; RECOMBINATION; SPECIES DIVERSITY;

ARTICLE; BACTERIAL GENETICS; ECOLOGICAL NICHE; GENE FREQUENCY; GENETIC DRIFT; GENETIC VARIABILITY; HAPLOTYPE; HETEROZYGOSITY; HOMOLOGOUS RECOMBINATION; HORIZONTAL GENE TRANSFER; METAGENOMICS; MICROBIAL DIVERSITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PRIORITY JOURNAL; PROCHLOROCOCCUS; SINGLE NUCLEOTIDE POLYMORPHISM; SYNECHOCOCCUS; THERMOPHILIC ARCHAEON; THERMOPHILIC BACTERIUM; ALLELE; DNA SEQUENCE; ENVIRONMENT; GENETIC RECOMBINATION; GENETIC SELECTION; GENETICS; MOLECULAR EVOLUTION;

BACTERIA (MICROORGANISMS); CYANOBACTERIA;

ALLELES; ENVIRONMENT; EVOLUTION, MOLECULAR; POLYMORPHISM, SINGLE NUCLEOTIDE; RECOMBINATION, GENETIC; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA; SYNECHOCOCCUS;

EID: 84930626863     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aaa4456     Document Type: Article

References (32)

1. N. Kashtan et al., Science 344, 416-420 (2014).
2. Z. I. Johnson et al., Science 311, 1737-1740 (2006).
3. B. J. Shapiro et al., Science 336,48-51 (2012).
4. H. Cadillo-Quiroz et al., PLOS Biol. 10, e1001265 (2012).
5. O. X. Cordero, M. F. Polz, Nat. Rev. Microbiol. 12, 263-273 (2014).
6. W. P. Hanage, C. Fraser, B. G. Spratt, Phil. Trans. R. Soc. B 361, 1917-1927 (2006).
7. C. Fraser, W. P. Hanage, B. G. Spratt, Science 315, 476-480 (2007).
8. F. M. Cohan, E. B. Perry, Curr. Biol. 17, R373-R386 (2007).
9. M. F. Polz, E. J. Alm, W. P. Hanage, Trends Genet. 29, 170-175 (2013).
10. E. D. Becraft, F. M. Cohan, M. Kühl, S. I. Jensen, D. M. Ward, Appl. Environ. Microbiol. 77, 7689-7697 (2011).
11. M. C. Melendrez, R. K. Lange, F. M. Cohan, D. M. Ward, Appl. Environ. Microbiol. 77, 1359-1367 (2011).
12. D. M. Ward et al., Phil. Trans. R. Soc. B 361, 1997-2008 (2006).
13. D. Bhaya et al., ISME J. 1, 703-713 (2007).
14. M. R. Gomez-Garcia, F. Fazeli, A. Grote, A. R. Grossman, D. Bhaya, J. Bacteriol. 195, 3309-3319 (2013).
15. W. C. Nelson, L. Wollerman, D. Bhaya, J. F. Heidelberg, Appl. Environ. Microbiol. 77, 5458-5466 (2011).
16. J. F. Heidelberg, W. C. Nelson, T. Schoenfeld, D. Bhaya, PLOS One 4, e4169(2009).
17. D. Gevers et al., Nat. Rev. Microbiol. 3, 733-739 (2005).
18. X. Didelot, M. C. J. Maiden, Trends Microbiol. 18, 315-322 (2010).
19. M. J. Rosen, B. J. Callahan, D. S. Fisher, S. P. Holmes, BMC Bioinformatics 13, 283 (2012).
20. V. Kunin, A. Engelbrektson, H. Ochman, P. Hugenholtz, Environ. Microbiol. 12, 118-123 (2010).
21. R. P. Smyth et al., Gene 469, 45-51 (2010).
22. X. Didelot, D. Falush, Genetics 175, 1251-1266 (2007).
23. M. Vos, X. Didelot, ISME J. 3, 199-208 (2009).
24. G. McVean, P. Awadalla, P. Fearnhead, Genetics 160, 1231-1241 (2002).
25. Y. S. Song, J. S. Song, Theor. Popul. Biol. 71, 49-60 (2007).
26. J. R. Doroghazi, D. H. Buckley, ISME J. 4, 1136-1143 (2010).
27. K. A. Jolley, D. J. Wilson, P. Kriz, G. McVean, M. C. J. Maiden, Mol. Biol. Evol. 22, 562-569 (2005).
28. X. Didelot, G. Méric, D. Falush, A. E. Darling, BMC Genomics 13, 256 (2012).
29. G. Morelli et al., PLOS Genet. 6, e1001036 (2010).
30. J. Majewski, FEMS Microbiol. Lett. 199, 161-169 (2001).
31. S. Takuno, T. Kado, R. P. Sugino, L. Nakhleh, H. Innan, Mol. Biol. Evol. 29, 797-809 (2012).
32. M. R. Gomez-Garcia, M. Davison, M. Blain-Hartnung, A. R. Grossman, D. Bhaya, ISME J. 5, 141-149 (2011).