메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe

Author keywords

[No Author keywords available]

Indexed keywords

CELL CYCLE PROTEIN; CLR4 PROTEIN, S POMBE; EUCHROMATIN; FUNGAL DNA; HETEROCHROMATIN; METHYLTRANSFERASE; SCHIZOSACCHAROMYCES POMBE PROTEIN;

EID: 84953284502     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep18757     Document Type: Article
Times cited : (14)

References (34)
  • 1
    • 38549152196 scopus 로고    scopus 로고
    • Host genome surveillance for retrotransposons by transposon-derived proteins
    • Cam, H. P., Noma, K., Ebina, H., Levin, H. L. & Grewal, S. I. S. Host genome surveillance for retrotransposons by transposon-derived proteins. Nature 451, 431-436 (2008).
    • (2008) Nature , vol.451 , pp. 431-436
    • Cam, H.P.1    Noma, K.2    Ebina, H.3    Levin, H.L.4    Grewal, S.I.S.5
  • 2
    • 23044498502 scopus 로고    scopus 로고
    • Comprehensive analysis of heterochromatin-and RNAi-mediated epigenetic control of the fission yeast genome
    • Cam, H. P. et al. Comprehensive analysis of heterochromatin-and RNAi-mediated epigenetic control of the fission yeast genome. Nat. Genet. 37, 809-819 (2005).
    • (2005) Nat. Genet. , vol.37 , pp. 809-819
    • Cam, H.P.1
  • 3
    • 33750438774 scopus 로고    scopus 로고
    • Genome-wide characterization of fission yeast DNA replication origins
    • Heichinger, C., Penkett, C. J., Bahler, J. & Nurse, P. Genome-wide characterization of fission yeast DNA replication origins. EMBO J. 25, 5171-5179 (2006).
    • (2006) EMBO J. , vol.25 , pp. 5171-5179
    • Heichinger, C.1    Penkett, C.J.2    Bahler, J.3    Nurse, P.4
  • 4
    • 84870390011 scopus 로고    scopus 로고
    • Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation
    • Tanaka, A. et al. Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation. Mol. Cell 48, 532-46 (2012).
    • (2012) Mol. Cell , vol.48 , pp. 532-546
    • Tanaka, A.1
  • 5
    • 84923920881 scopus 로고    scopus 로고
    • The spatial and temporal organization of origin firing during the S-phase of fission yeast
    • Kaykov, A. & Nurse, P. The spatial and temporal organization of origin firing during the S-phase of fission yeast. Genome Res. 25, 391-401 (2015).
    • (2015) Genome Res. , vol.25 , pp. 391-401
    • Kaykov, A.1    Nurse, P.2
  • 6
    • 0032559794 scopus 로고    scopus 로고
    • Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of s phase in human cells
    • Jackson, D. A. & Pombo, A. Replicon Clusters Are Stable Units of Chromosome Structure: Evidence That Nuclear Organization Contributes to the Efficient Activation and Propagation of S Phase in Human Cells. J. Cell Biol. 140, 1285-1295 (1998).
    • (1998) J. Cell Biol. , vol.140 , pp. 1285-1295
    • Jackson, D.A.1    Pombo, A.2
  • 7
    • 0035503004 scopus 로고    scopus 로고
    • Regulation of replication timing in fission yeast
    • Kim, S. M. & Huberman, J. A. Regulation of replication timing in fission yeast. EMBO J. 20, 6115-26 (2001).
    • (2001) EMBO J. , vol.20 , pp. 6115-6126
    • Kim, S.M.1    Huberman, J.A.2
  • 9
    • 84925774880 scopus 로고    scopus 로고
    • Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure
    • Grand, R. S. et al. Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure. Nucleic Acids Res. 42, 12585-99 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. 12585-12599
    • Grand, R.S.1
  • 10
    • 84923169410 scopus 로고    scopus 로고
    • Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. Pombe
    • Mizuguchi, T. et al. Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe. Nature 516, 432-435 (2014).
    • (2014) Nature , vol.516 , pp. 432-435
    • Mizuguchi, T.1
  • 11
    • 22144447822 scopus 로고    scopus 로고
    • RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe
    • Martienssen, R. A., Zaratiegui, M. & Goto, D. B. RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends Genet. 21, 450-456 (2005).
    • (2005) Trends Genet. , vol.21 , pp. 450-456
    • Martienssen, R.A.1    Zaratiegui, M.2    Goto, D.B.3
  • 12
    • 77952236323 scopus 로고    scopus 로고
    • RNAi-dependent formation of heterochromatin and its diverse functions
    • Grewal, S. I. S. RNAi-dependent formation of heterochromatin and its diverse functions. Curr. Opin. Genet. Dev. 20, 134-141 (2010).
    • (2010) Curr. Opin. Genet. Dev. , vol.20 , pp. 134-141
    • Grewal, S.I.S.1
  • 13
    • 79960389332 scopus 로고    scopus 로고
    • Coordination of DNA replication and histone modification by the Rik1-Dos2 complex
    • Li, F., Martienssen, R. A. & Cande, W. Z. Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature 475, 244-248 (2011).
    • (2011) Nature , vol.475 , pp. 244-248
    • Li, F.1    Martienssen, R.A.2    Cande, W.Z.3
  • 14
    • 84907437809 scopus 로고    scopus 로고
    • Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe
    • Grand, R. S., Martienssen, R. & O'Sullivan, J. M. Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion 17, 141-149 (2014).
    • (2014) Mitochondrion , vol.17 , pp. 141-149
    • Grand, R.S.1    Martienssen, R.2    O'Sullivan, J.M.3
  • 15
    • 78650996873 scopus 로고    scopus 로고
    • CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR
    • Zaratiegui, M. et al. CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature 469, 112-115 (2011).
    • (2011) Nature , vol.469 , pp. 112-115
    • Zaratiegui, M.1
  • 16
    • 80455176844 scopus 로고    scopus 로고
    • RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II
    • Zaratiegui, M. et al. RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature 479, 135-138 (2011).
    • (2011) Nature , vol.479 , pp. 135-138
    • Zaratiegui, M.1
  • 17
    • 84911478490 scopus 로고    scopus 로고
    • Topologically associating domains are stable units of replication-timing regulation
    • Pope, B. D. et al. Topologically associating domains are stable units of replication-timing regulation. Nature 515, 402-405 (2014).
    • (2014) Nature , vol.515 , pp. 402-405
    • Pope, B.D.1
  • 18
    • 0036591890 scopus 로고    scopus 로고
    • Replication timing and transcriptional control: Beyond cause and effect
    • Gilbert, D. M. Replication timing and transcriptional control: Beyond cause and effect. Curr. Opin. Cell Biol. 14, 377-383 (2002).
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 377-383
    • Gilbert, D.M.1
  • 19
    • 34447565003 scopus 로고    scopus 로고
    • Replication in context: Dynamic regulation of DNA replication patterns in metazoans
    • Aladjem, M. I. Replication in context: Dynamic regulation of DNA replication patterns in metazoans. Nat. Rev. Genet. 8, 588-600 (2007).
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 588-600
    • Aladjem, M.I.1
  • 20
    • 34250792759 scopus 로고    scopus 로고
    • The Clr4 methyltransferase determines the subnuclear localization of the mating-type region in fission yeast
    • Alfredsson-Timmins, J., Henningson, F. & Bjerling, P. The Clr4 methyltransferase determines the subnuclear localization of the mating-type region in fission yeast. J. Cell Sci. 120, 1935-1943 (2007).
    • (2007) J. Cell Sci. , vol.120 , pp. 1935-1943
    • Alfredsson-Timmins, J.1    Henningson, F.2    Bjerling, P.3
  • 21
    • 84877074754 scopus 로고    scopus 로고
    • Mutations disrupting histone methylation have different effects on replication timing in S. Pombe centromere
    • Li, P. C., Green, M. D. & Forsburg, S. L. Mutations disrupting histone methylation have different effects on replication timing in S. pombe centromere. PLoS One 8, e61464 (2013).
    • (2013) PLoS One , vol.8 , pp. e61464
    • Li, P.C.1    Green, M.D.2    Forsburg, S.L.3
  • 22
    • 61349201535 scopus 로고    scopus 로고
    • Establishing the program of origin firing during s phase in fission yeast
    • Wu, P. Y. J. & Nurse, P. Establishing the Program of Origin Firing during S Phase in Fission Yeast. Cell 136, 852-864 (2009).
    • (2009) Cell , vol.136 , pp. 852-864
    • Wu, P.Y.J.1    Nurse, P.2
  • 23
    • 72449204595 scopus 로고    scopus 로고
    • Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin
    • Bancaud, A. et al. Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin. EMBO J. 28, 3785-98 (2009).
    • (2009) EMBO J. , vol.28 , pp. 3785-3798
    • Bancaud, A.1
  • 25
    • 33644874573 scopus 로고    scopus 로고
    • The UCSC Genome Browser Database: Update 2006
    • Hinrichs, A. S. et al. The UCSC Genome Browser Database: Update 2006. Nucleic Acids Res. 34, D590-8 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 590-598
    • Hinrichs, A.S.1
  • 26
    • 36348943531 scopus 로고    scopus 로고
    • Nuclear size control in fission yeast
    • Neumann, F. R. & Nurse, P. Nuclear size control in fission yeast. J. Cell Biol. 179, 593-600 (2007).
    • (2007) J. Cell Biol. , vol.179 , pp. 593-600
    • Neumann, F.R.1    Nurse, P.2
  • 27
    • 0027151998 scopus 로고
    • Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast
    • Funabiki, H., Hagan, I., Uzawa, S. & Yanagida, M. Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast. J. Cell Biol. 121, 961-976 (1993).
    • (1993) J. Cell Biol. , vol.121 , pp. 961-976
    • Funabiki, H.1    Hagan, I.2    Uzawa, S.3    Yanagida, M.4
  • 28
    • 75649114998 scopus 로고    scopus 로고
    • Centromeric localization of dispersed Pol III genes in fission yeast
    • Iwasaki, O., Tanaka, A., Tanizawa, H., Grewal, S. I. S. & Noma, K. I. Centromeric localization of dispersed Pol III genes in fission yeast. Mol. Biol. Cell 21, 254-265 (2010).
    • (2010) Mol. Biol. Cell , vol.21 , pp. 254-265
    • Iwasaki, O.1    Tanaka, A.2    Tanizawa, H.3    Grewal, S.I.S.4    Noma, K.I.5
  • 29
    • 0035163559 scopus 로고    scopus 로고
    • The domain structure of centromeres is conserved from fission yeast to humans
    • Kniola, B. et al. The domain structure of centromeres is conserved from fission yeast to humans. Mol. Biol. Cell 12, 2767-75 (2001).
    • (2001) Mol. Biol. Cell , vol.12 , pp. 2767-2775
    • Kniola, B.1
  • 30
    • 84880242640 scopus 로고    scopus 로고
    • Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription
    • Cagliero, C., Grand, R. S., Jones, M. B., Jin, D. J. & O'Sullivan, J. M. Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription. Nucleic Acids Res. 41, 6058-71 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. 6058-6071
    • Cagliero, C.1    Grand, R.S.2    Jones, M.B.3    Jin, D.J.4    O'Sullivan, J.M.5
  • 31
    • 70149094741 scopus 로고    scopus 로고
    • Global identification of yeast chromosome interactions using Genome conformation capture
    • Rodley, C. D. M., Bertels, F., Jones, B. & O'Sullivan, J. M. Global identification of yeast chromosome interactions using Genome conformation capture. Fungal Genet. Biol. 46, 879-886 (2009).
    • (2009) Fungal Genet. Biol. , vol.46 , pp. 879-886
    • Rodley, C.D.M.1    Bertels, F.2    Jones, B.3    O'Sullivan, J.M.4
  • 32
    • 77952857912 scopus 로고    scopus 로고
    • A signal-noise model for significance analysis of ChIP-seq with negative control
    • Xu, H. et al. A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics 26, 1199-204 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 1199-1204
    • Xu, H.1
  • 33
    • 57049179496 scopus 로고    scopus 로고
    • High-resolution statistical mapping reveals gene territories in live yeast
    • Berger, A. B. et al. High-resolution statistical mapping reveals gene territories in live yeast. Nat. Methods 5, 1031-1037 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 1031-1037
    • Berger, A.B.1
  • 34
    • 84863540362 scopus 로고    scopus 로고
    • Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
    • Tjong, H. A., Gong, K. A., Chen, L. A. & Alber, F. A. Physical tethering and volume exclusion determine higher-order genome organization in budding yeast. Genome Res. 22, 1295-1305 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1295-1305
    • Tjong, H.A.1    Gong, K.A.2    Chen, L.A.3    Alber, F.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.