Transcriptome profiling of postharvest strawberry fruit in response to exogenous auxin and abscisic acid

Planta

Volumn 243, Issue 1, 2016, Pages 183-197

  Chen, Jingxin ^a   Mao, Linchun ^a   Lu, Wenjing ^a   Ying, Tiejin ^a   Luo, Zisheng ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Abscisic acid; Auxin; Fragaria ananassa; Postharvest senescence; Signal transduction; Transcriptome

Indexed keywords

ABSCISIC ACID; INDOLEACETIC ACID DERIVATIVE; PHYTOHORMONE; PLANT PROTEIN; SUCROSE; TRANSCRIPTOME;

DOWN REGULATION; DRUG EFFECTS; FRAGARIA; FRUIT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; SIGNAL TRANSDUCTION;

ABSCISIC ACID; DOWN-REGULATION; FRAGARIA; FRUIT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; PLANT GROWTH REGULATORS; PLANT PROTEINS; SIGNAL TRANSDUCTION; SUCROSE; TRANSCRIPTOME;

EID: 84952861345     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-015-2402-5     Document Type: Article

References (54)

1. Böttcher C, Keyzers RA, Boss PK, Davies C (2010) Sequestration of IAA by the indole-3-acetic acid-amido synthetase GH3-1 in grape berry (Vitis vinifera L.) and the proposed role of IAA conjugation during ripening. J Exp Bot 61:3615–3625
2. Callard D, Axelos M, Mazzolini L (1996) Novel molecular markers for late phases of the growth cycle of Arabidopsis thaliana cell-suspension cultures are expressed during organ senescence. Plant Physiol 112:705–715
3. Catalá C, Rose JKC, Bennett AB (2000) IAA-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth. Plant Physiol 122:527–534
4. Chang S, Puryear J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11:113–116
5. Chen JX, Mao LC, Mi HB, Zhao YY, Ying TJ, Luo ZS (2014) Detachment-accelerated ripening and senescence of strawberry (Fragaria × ananassa Duch. cv. Akihime) fruit and the regulation role of multiple phytohormones. Acta Physiol Plant 36:2441–2451
6. Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB (2006) Identification and functional characterization of the BAG protein family in Arabidopsis thaliana. J Biol Chem 281:18793–18801
7. Esaka M, Fujisawa K, Goto M, Kisu Y (1992) Regulation of ascorbate oxidase expression in pumpkin by auxin and copper. Plant Physiol 100:231–237
8. Fofana B, Duguid S, Cloutier S (2004) Cloning of fatty acid biosynthetic genes β-ketoacyl CoA synthase, fatty acid elongase, stearoyl-ACP desaturase, and fatty acid desaturase and analysis of expression in the early developmental stages of flax (Linum usitatissimum L.) seeds. Plant Sci 166:1487–1496
9. García-Hernández M, Murphy A, Taiz L (1998) Metallothioneins 1 and 2 have distinct but overlapping expression patterns in Arabidopsis. Plant Physiol 118:387–397
10. Given NK, Venis MA, Grierson D (1988a) Phenylalanine ammonia-lyase activity and anthocyanin synthesis in ripening strawberry fruit. J Plant Physiol 133:25–30
11. Given NK, Venis MA, Gierson D (1988b) Hormonal regulation of ripening in the strawberry, a non-climacteric fruit. Planta 174:402–406
12. Gou XP, He K, Yang H, Yuan T, Lin HH, Clouse SD, Li J (2010) Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genom 11:19
13. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng QD (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29:644–652
14. Gray WM, Hellmann H, Dharmasiri S, Estelle M (2002) Role of the Arabidopsis RING-H2 protein RBX1 in RUB modification and SCF function. Plant Cell Online 14:2137–2144
15. Hu XL, Liu RX, Li YH, Wang W, Tai FJ, Xue RL, Li CH (2010) Heat shock protein 70 regulates the abscisic acid-induced antioxidant response of maize to combined drought and heat stress. Plant Growth Regul 60:225–235
16. Hubbard NL, Pharr DM, Huber SC (1991) Sucrose phosphate synthase and other sucrose metabolizing enzymes in fruits of various species. Physiol Plant 82:191–196
17. Jami SK, Clark GB, Ayele BT, Ashe P, Kirti PB (2012) Genome-wide comparative analysis of annexin superfamily in plants. Plos One 7:11
18. Ji K, Chen P, Sun L, Wang YP, Dai SJ, Li Q, Li P, Sun YF, Wu Y, Duan CR, Leng P (2012) Non-climacteric ripening in strawberry fruit is linked to ABA, FaNCED2 and FaCYP707A1. Funct Plant Biol 39:351–357
19. Jia HF, Chai YM, Li CL, Lu D, Luo JJ, Qin L, Shen YY (2011) Abscisic acid plays an important role in the regulation of strawberry fruit ripening. Plant Physiol 157:188–199
20. Jiang YM, Joyce DC (2003) ABA effects on ethylene production, PAL activity, anthocyanin and phenolic contents of strawberry fruit. Plant Growth Regul 39:171–174
21. Jones B, Frasse P, Olmos E, Zegzouti H, Li ZG, Latche A, Pech JC, Bouzayen M (2002) Down-regulation of DR12, an IAA-response-factor homolog, in the tomato results in a pleiotropic phenotype including dark green and blotchy ripening fruit. Plant J 32:603–613
22. Kabbage M, Dickman MB (2008) The BAG proteins: a ubiquitous family of chaperone regulators. Cell Mol Life Sci 65:1390–1402
23. Knee M, Sargent JA, Osborne DJ (1977) Cell-wall metabolism in metabolism in developing strawberry fruits. J Exp Bot 28:377–396
24. Lee S, Lee EJ, Yang EJ, Lee JE, Park AR, Song WH, Park OK (2004) Proteomic identification of annexins, calcium-dependent membrane binding proteins that mediate osmotic stress and abscisic acid signal transduction in Arabidopsis. Plant Cell 16:1378–1391
25. Lei GJ, Zhu XF, Wang ZW, Dong F, Dong NY, Zheng SJ (2014) Abscisic acid alleviates iron deficiency by promoting root iron reutilization and transport from root to shoot in Arabidopsis. Plant Cell Environ 37:852–863
26. Li B, Dewey C (2011) RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform 12:323
27. Li CJ, Liu ZJ, Zhang QR, Wang RZ, Xiao LT, Ma H, Chong K, Xu YY (2012) SKP1 is involved in abscisic acid signalling to regulate seed germination, stomatal opening and root growth in Arabidopsis thaliana. Plant Cell Environ 35:952–965
28. Li H, Mao WJ, Liu W, Dai HY, Liu YX, Ma Y, Zhang ZH (2013) Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry. Planta 238:695–713
29. Liu D, Chen J, Lu W (2011) Expression and regulation of the early IAA-responsive Aux/IAA genes during strawberry fruit development. Mol Biol Rep 38:1187–1193
30. Lunkenbein S, Bellido M, Aharoni A, Salentijn EMJ, Kaldenhoff R, Coiner HA, Muñoz-Blanco J, Schwab W (2006) Cinnamate metabolism in ripening fruit. characterization of a UDP-glucose: cinnamate glucosyltransferase from strawberry. Plant Physiol 140:1047–1058
31. Mcatee P, Karim S, Schaffer R, David K (2013) A dynamic interplay between phytohormones is required for fruit development, maturation, and ripening. Front Plant Sci 4:79
32. Medina-Escobar N, Cardenas J, Munoz-Blanco J, Caballero JL (1998) Cloning and molecular characterization of a strawberry fruit ripening-related cDNA corresponding a mRNA for a low-molecular-weight heat-shock protein. Plant Mol Biol 36:33–42
33. Miszczak A, Forney CF, Prange RK (1995) Development of aroma volatiles and color during postharvest ripening of `Kent’ strawberries. J Am Soc Hortic Sci 120:650–655
34. Mulekar JJ, Bu Q, Chen F, Huq E (2012) Casein kinase II α subunits affect multiple developmental and stress-responsive pathways in Arabidopsis. Plant J 69:343–354
35. Munne-Bosch S, Muller M (2013) Hormonal cross-talk in plant development and stress responses. Front Plant Sci 4:529
36. OfosuAnim J, Kanayama Y, Yamaki S (1996) Sugar uptake into strawberry fruit is stimulated by abscisic acid and indoleacetic acid. Physiol Plant 97:169–174
37. Ohlrogge JB, Jaworski JG (1997) Regulation of fatty acid synthesis. Annu Rev Plant Physiol 48:109–136
38. Ornelas-Paz J, Yahia EM, Ramírez-Bustamante N, Pérez-Martínez JD, Escalante-Minakata MP, Ibarra-Junquera V, Acosta-Muñiz C, Guerrero-Prieto V, Ochoa-Reyes E (2013) Physical attributes and chemical composition of organic strawberry fruit (Fragaria x ananassa Duch, Cv. Albion) at six stages of ripening. Food Chem 138:372–381
39. Pierre-Jerome E, Moss BL, Nemhauser JL (2013) Tuning the IAA transcriptional response. J Exp Bot 64:2557–2563
40. Reddy ASN, Poovaiah BW (1990) Molecular cloning and sequencing of a cDNA for an IAA-repressed mRNA: correlation between fruit growth and repression of the IAA-regulated gene. Plant Mol Biol 14:127–136
41. Rodriguez MCS, Petersen M, Mundy J (2010) Mitogen-activated protein kinase signaling in plants. Annu Rev Plant Biol 61:621–649
42. Roudier F, Gissot L, Beaudoin F, Haslam R, Michaelson L, Marion J, Molino D, Lima A, Bach L, Morin H, Tellier F, Palauqui JC, Bellec Y, Renne C, Miquel M, DaCosta M, Vignard J, Rochat C, Markham JE, Moreau P, Napier J, Faure JD (2010) Very-long-chain fatty acids are involved in polar IAA transport and developmental patterning in Arabidopsis. Plant Cell 22:364–375
43. Shi HY, Li ZH, Zhang YX, Chen L, Xiang DY, Zhang YF (2014) Two pear glutathione S-transferases genes are regulated during fruit development and involved in response to salicylic acid, IAA, and glucose signaling. PloS One 9(2):e89926. doi:10.1371/journal.phone.0089926
44. Shin Y, Ryu JA, Liu RH, Nock JF, Watkins CB (2008) Harvest maturity, storage temperature and relative humidity affect fruit quality, antioxidant contents and activity, and inhibition of cell proliferation of strawberry fruit. Postharvest Biol Technol 49:201–209
45. Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440–9445
46. Symons GM, Chua YJ, Ross JJ, Quittenden LJ, Davies NW, Reid JB (2012) Hormonal changes during non-climacteric ripening in strawberry. J Exp Bot 63:4741–4750
47. Szemenyei H, Hannon M, Long JA (2008) TOPLESS mediates IAA-dependent transcriptional repression during Arabidopsis embryogenesis. Science 319:1384–1386
48. ten Hove C, Bochdanovits Z, Jansweijer VA, Koning F, Berke L, Sanchez-Perez G, Scheres B, Heidstra R (2011) Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set. Plant Mol Biol 76:69–83
49. Trainotti L, Tadiello A, Casadoro G (2007) The involvement of IAA in the ripening of climacteric fruits comes of age: the hormone plays a role of its own and has an intense interplay with ethylene in ripening peaches. J Exp Bot 58:3299–3308
50. Wang WX, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9:244–252
51. Wang LK, Feng ZX, Wang X, Wang XW, Zhang XG (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26:136–138
52. Whitelaw CA, Le Huquet JA, Thurman DA, Tomsett AB (1997) The isolation and characterisation of type II metallothionein-like genes from tomato (Lycopersicon esculentum L.). Plant Mol Biol 33:503–511
53. Yamamoto KT, Mori H, Imaseki H (1992) Novel mRNA sequences induced by indole-3-acetic acid in sections of elongating hypocotyls of mung bean (Vigna radiata). Plant Cell Physiol 33:13–20
54. Zhang X, Garreton V, Chua NH (2005) The AIP2 E3 ligase acts as a novel negative regulator of ABA signaling by promoting ABI3 degradation. Genes Dev 19:1532–1543