메뉴 건너뛰기




Volumn 21, Issue 3, 2015, Pages 125-140

Automated quantum chemistry based molecular dynamics simulations of electron ionization induced fragmentations of the nucleobases uracil, thymine, cytosine, and guanine

Author keywords

Electron ionization; Fragmentation; Molecular dynamics; Nucleobases; Quantum chemistry

Indexed keywords

AROMATIC COMPOUNDS; DECOMPOSITION; ELECTRONS; IONIZATION OF GASES; MASS SPECTROMETERS; MASS SPECTROMETRY; POSITIVE IONS; QUANTUM CHEMISTRY; STOCHASTIC SYSTEMS;

EID: 84952719039     PISSN: 14690667     EISSN: 17516838     Source Type: Journal    
DOI: 10.1255/ejms.1313     Document Type: Article
Times cited : (27)

References (75)
  • 1
    • 33748366270 scopus 로고
    • Purine bases, nucleosides, and nucleotides: Aqueous solution redox chemistry and transfor-mation reactions of their radical cations and e- and OH adduct
    • S. Steenken, "Purine bases, nucleosides, and nucleotides: Aqueous solution redox chemistry and transformation reactions of their radical cations and e- and OH adduct", Chem. Rev. 89, 503 (1989). doi:http://dx.doi.org/10.1021/cr00093a003.
    • (1989) Chem. Rev , vol.89 , pp. 503
    • Steenken, S.1
  • 2
    • 0036628726 scopus 로고    scopus 로고
    • Biological consequences of free radical-damaged DNA bases
    • S.S. Wallace, "Biological consequences of free radical-damaged DNA bases", Free Rad. Biol. Med. 33, 1 (2002). doi:http://dx.doi.org/10.1016/S0891-5849(02)00827-4.
    • (2002) Free Rad. Biol. Med , vol.33 , pp. 1
    • Wallace, S.S.1
  • 4
    • 0027139888 scopus 로고
    • Measurement of DNA damage by electrons with energies between 25 and 4000 eV
    • M. Folkard, K. Prise, B. Vojnovic, S. Davies, M. Roper and B. Michael, "Measurement of DNA damage by electrons with energies between 25 and 4000 eV", Int. J. Radiat. Biol. 64, 651 (1993). doi:http://dx.doi.org/10.1080/09553009314551891.
    • (1993) Int. J. Radiat. Biol , vol.64 , pp. 651
    • Folkard, M.1    Prise, K.2    Vojnovic, B.3    Davies, S.4    Roper, M.5    Michael, B.6
  • 5
    • 0038188968 scopus 로고    scopus 로고
    • Resonant formation of DNA strand breaks by low-energy (3 to 20 eV) electrons
    • B. Boudaïffa, P. Cloutier, D. Hunting, M.A. Huels and L. Sanche, "Resonant formation of DNA strand breaks by low-energy (3 to 20 eV) electrons", Science 287, 1658 (2000). doi:http://dx.doi.org/10.1126/science.287.5458.1658.
    • (2000) Science , vol.287 , pp. 1658
    • Boudaïffa, B.1    Cloutier, P.2    Hunting, D.3    Huels, M.A.4    Sanche, L.5
  • 6
    • 33745825802 scopus 로고    scopus 로고
    • Decomposition of thymidineby low-energy electrons: Implications for the molecularmechanisms of single-strand breaks in DNA
    • S. Ptasínska, S. Denifl, S. Gohlke, P. Scheier, E. Illenberger and T.D. Märk, "Decomposition of thymidineby low-energy electrons: implications for the molecularmechanisms of single-strand breaks in DNA", Angew. Chem. Int. Ed. 45, 1893 (2006). doi:http://dx.doi.org/10.1002/anie.200503930.
    • (2006) Angew. Chem. Int. Ed , vol.45 , pp. 1893
    • Ptasínska, S.1    Denifl, S.2    Gohlke, S.3    Scheier, P.4    Illenberger, E.5    Märk, T.D.6
  • 7
    • 0013851652 scopus 로고
    • Mass spectra of nucleic acid derivatives. Pyrimidines
    • J.M. Rice, G.O. Dudek and M. Barber, "Mass spectra of nucleic acid derivatives. Pyrimidines", J. Am. Chem. Soc. 87, 4569 (1965). doi:http://dx.doi.org/10.1021/ja00948a029.
    • (1965) J. Am. Chem. Soc , vol.87 , pp. 4569
    • Rice, J.M.1    Dudek, G.O.2    Barber, M.3
  • 8
    • 0014215579 scopus 로고
    • Mass spectra of nucleic acid derivatives. II. Guanine, adenine, and related compounds
    • J.M. Rice and G.O. Dudek, "Mass spectra of nucleic acid derivatives. II. Guanine, adenine, and related compounds" J. Am. Chem. Soc. 89, 2719 (1967). doi:http://dx.doi.org/10.1021/ja00987a039.
    • (1967) J. Am. Chem. Soc , vol.89 , pp. 2719
    • Rice, J.M.1    Dudek, G.O.2
  • 9
    • 0001531571 scopus 로고
    • Syntheses of all singly labeled [15N]adenines: Mass spectral fragmentation of adenine
    • M.D.C.G. Barrio, D.I.C. Scopes, J.B. Holtwick and N. Leonard, "Syntheses of all singly labeled [15N]adenines: Mass spectral fragmentation of adenine", J. Proc. Natl Acad. Sci. USA 78, 3986 (1981). doi:http://dx.doi.org/10.1073/pnas.78.7.3986.
    • (1981) J. Proc. Natl Acad. Sci. USA , vol.78 , pp. 3986
    • Barrio, M.D.C.G.1    Scopes, D.I.C.2    Holtwick, J.B.3    Leonard, N.4
  • 10
    • 0000235005 scopus 로고
    • Mass spectrometry of nucleic acid constituents. Electron ionization spectra of selectively labeled adenines
    • S. Sethi, S.P. Gupta, E.E. Jenkins, C.W. Whitehead, L.B. Townsend and J.A. McCloskey, "Mass spectrometry of nucleic acid constituents. Electron ionization spectra of selectively labeled adenines", J. Am. Chem. Soc. 104, 3349 (1982). doi:http://dx.doi.org/10.1021/ja00376a017.
    • (1982) J. Am. Chem. Soc , vol.104 , pp. 3349
    • Sethi, S.1    Gupta, S.P.2    Jenkins, E.E.3    Whitehead, C.W.4    Townsend, L.B.5    McCloskey, J.A.6
  • 12
    • 24944480665 scopus 로고    scopus 로고
    • Identification of ion fragments produced from thymine and deuterated thymine by low energy ion impact in films and electron impact in the gas phase
    • M. Imhoff, Z. Deng and M.A. Huels, "Identification of ion fragments produced from thymine and deuterated thymine by low energy ion impact in films and electron impact in the gas phase", Int. J. Mass Spectrom. 245, 68 (2005). doi:http://dx.doi.org/10.1016/j.ijms.2005.07.002.
    • (2005) Int. J. Mass Spectrom , vol.245 , pp. 68
    • Imhoff, M.1    Deng, Z.2    Huels, M.A.3
  • 13
    • 84903362533 scopus 로고    scopus 로고
    • Multi-photon ionization and fragmentation of uracil: Neutralexcited-state ring opening and hydration effects
    • B. Barc, M. Ryszka, J. Spurrell, M. Dampc, P. Limão Vieira, R. Parajuli, N.J. Mason and S. Eden, "Multi-photon ionization and fragmentation of uracil: neutralexcited-state ring opening and hydration effects", J. Chem. Phys. 139, 244311 (2013). doi:http://dx.doi.org/10.1063/1.4851476.
    • (2013) J. Chem. Phys , vol.139 , pp. 244311
    • Barc, B.1    Ryszka, M.2    Spurrell, J.3    Dampc, M.4    Vieira, P.L.5    Parajuli, R.6    Mason, N.J.7    Eden, S.8
  • 14
    • 18244396572 scopus 로고    scopus 로고
    • Photoion mass spectrometry of adenine, thymine and uracil in the 6-22 eV photon energy range
    • H.-W. Jochims, M. Schwell, H. Baumgärtel and S. Leach, "Photoion mass spectrometry of adenine, thymine and uracil in the 6-22 eV photon energy range", Chem. Phys. 314, 263 (2005). doi:http://dx.doi.org/10.1016/j.chemphys.2005.03.008.
    • (2005) Chem. Phys. , vol.314 , pp. 263
    • Jochims, H.-W.1    Schwell, M.2    Baumgärtel, H.3    Leach, S.4
  • 15
    • 84866616524 scopus 로고    scopus 로고
    • Fragmentation pathways in the uracil radical cation
    • C. Zhou, S. Matsika, M. Kotur and T.C. Weinacht, "Fragmentation pathways in the uracil radical cation", J. Phys. Chem. A 116, 9217 (2012). doi:http://dx.doi.org/10.1021/jp209213e.
    • (2012) J. Phys. Chem. A , vol.116 , pp. 9217
    • Zhou, C.1    Matsika, S.2    Kotur, M.3    Weinacht, T.C.4
  • 17
    • 84885599295 scopus 로고    scopus 로고
    • Hydrogen release from charged fragments of the uracil cation followed by their fragmentation: A DFT study
    • L.S. Arani, P. Mignon, H. Abdoul-Carime, B. Farizon, M. Farizon and H. Chermette, " Hydrogen release from charged fragments of the uracil cation followed by their fragmentation: A DFT study", Chem. Phys. Lett. 583, 165 (2013). doi:http://dx.doi.org/10.1016/j.cplett.2013.07.082.
    • (2013) Chem. Phys. Lett , vol.583 , pp. 165
    • Arani, L.S.1    Mignon, P.2    Abdoul-Carime, H.3    Farizon, B.4    Farizon, M.5    Chermette, H.6
  • 18
    • 84902005843 scopus 로고    scopus 로고
    • Theoretical and experimental study of the fragmentation of protonated uracil
    • L. Sadr-Arani, P. Mignon, H. Chermette and T. Douki, "Theoretical and experimental study of the fragmentation of protonated uracil", Chem. Phys. Lett. 605-606, 108 (2014). doi:http://dx.doi.org/10.1016/j.cplett.2014.05.026.
    • (2014) Chem. Phys. Lett , vol.108 , pp. 605-606
    • Sadr-Arani, L.1    Mignon, P.2    Chermette, H.3    Douki, T.4
  • 19
    • 80052331128 scopus 로고    scopus 로고
    • Distinguishing between relaxation pathways by combining dissociative ionization pump probe spectroscopy and ab initio calculations: A case study of cytosine
    • M. Kotur, T.C. Weinacht, C. Zhou, K.A. Kistler and S. Matsika, "Distinguishing between relaxation pathways by combining dissociative ionization pump probe spectroscopy and ab initio calculations: A case study of cytosine", J. Chem. Phys. 134, 184309 (2011). doi:http://dx.doi.org/10.1063/1.3586812.
    • (2011) J. Chem. Phys , vol.134 , pp. 184309
    • Kotur, M.1    Weinacht, T.C.2    Zhou, C.3    Kistler, K.A.4    Matsika, S.5
  • 20
    • 34648833631 scopus 로고    scopus 로고
    • Cytosine neutral molecules and cation- radicals in the gas-phase: Structures, energetics, ionchemistry, and neutralization-reionization mass spectrometry
    • J.K. Wolken, C. Yao, F. Turěcek, M.J. Polce and C. Wesdemiotis, "Cytosine neutral molecules and cation- radicals in the gas-phase: structures, energetics, ionchemistry, and neutralization-reionization mass spectrometry", Int. J. Mass Spectrom. 267, 30 (2007). doi:http://dx.doi.org/10.1016/j.ijms.2007.02.016.
    • (2007) Int. J. Mass Spectrom , vol.267 , pp. 30
    • Wolken, J.K.1    Yao, C.2    Turěcek, F.3    Polce, M.J.4    Wesdemiotis, C.5
  • 21
    • 0033796594 scopus 로고    scopus 로고
    • Radical cations of DNA bases: Some insights on structure and fragmentation patterns by density functional methods
    • R. Improta, G. Scalmani and V. Barone, "Radical cations of DNA bases: some insights on structure and fragmentation patterns by density functional methods", Int. J. Mass Spectrom. 201, 321 (2000). doi:http://dx.doi.org/10.1016/S1387-3806(00)00225-6.
    • (2000) Int. J. Mass Spectrom , vol.201 , pp. 321
    • Improta, R.1    Scalmani, G.2    Barone, V.3
  • 22
    • 77951850276 scopus 로고    scopus 로고
    • Collision-induced dissociation (CID) of guanine radical cation in the gas phase: An experimental and computational study
    • P. Cheng, Y. Li, S. Li, M. Zhang and Z. Zhou, "Collision-induced dissociation (CID) of guanine radical cation in the gas phase: An experimental and computational study", Phys. Chem. Chem. Phys. 12, 4667 (2010). doi:http://dx.doi.org/10.1039/b919513k.
    • (2010) Phys. Chem. Chem. Phys , vol.12 , pp. 4667
    • Cheng, P.1    Li, Y.2    Li, S.3    Zhang, M.4    Zhou, Z.5
  • 24
    • 84908463533 scopus 로고    scopus 로고
    • Electron ionization of the nucleobases adenine and hypoxanthine near the threshold: A combined experimental and theoretical study
    • M.M. Dawley, K. Tanzer, W.A. Cantrell, P. Plattner, N.R. Brinkmann, P. Scheier, S. Denifl and S. Ptasinska, "Electron ionization of the nucleobases adenine and hypoxanthine near the threshold: A combined experimental and theoretical study", Phys. Chem. Chem. Phys. 16, 25039 (2014). doi:http://dx.doi.org/10.1039/C4CP03452J.
    • (2014) Phys. Chem. Chem. Phys , vol.16 , pp. 25039
    • Dawley, M.M.1    Tanzer, K.2    Cantrell, W.A.3    Plattner, P.4    Brinkmann, N.R.5    Scheier, P.6    Denifl, S.7    Ptasinska, S.8
  • 26
    • 2742590512 scopus 로고    scopus 로고
    • Mixed quantum-classical dynamics
    • J.C. Tully, "Mixed quantum-classical dynamics", Faraday Discuss. 110, 407 (1998). doi:http://dx.doi.org/10.1039/a801824c.
    • (1998) Faraday Discuss , vol.110 , pp. 407
    • Tully, J.C.1
  • 27
    • 84878742600 scopus 로고    scopus 로고
    • Towards first principles calculation of electron impact mass spectra of molecules
    • S. Grimme, "Towards first principles calculation of electron impact mass spectra of molecules", Angew. Chem. Int. Ed. 52, 6306 (2013). doi:http://dx.doi.org/10.1002/anie.201300158.
    • (2013) Angew. Chem. Int. Ed , vol.52 , pp. 6306
    • Grimme, S.1
  • 28
  • 29
    • 84986520489 scopus 로고
    • Dynamics of ethyl radicaldecomposition. II. Applicability of classical mechanics to large-molecule unimolecular reaction dynamics
    • W.L. Hase and D.G. Buckowski, "Dynamics of ethyl radicaldecomposition. II. Applicability of classical mechanics to large-molecule unimolecular reaction dynamics", J. Comput. Chem. 3, 335 (1982). doi:http://dx.doi.org/10.1002/jcc.540030308.
    • (1982) J. Comput. Chem , vol.3 , pp. 335
    • Hase, W.L.1    Buckowski, D.G.2
  • 30
    • 80755176412 scopus 로고    scopus 로고
    • Use of direct dynamics simulations to determine unimolecular reaction paths and Arrhenius parameters for large molecules
    • L. Yang, R. Sun and W.L. Hase, "Use of direct dynamics simulations to determine unimolecular reaction paths and Arrhenius parameters for large molecules", J. Chem. Theory Comput. 7, 3478 (2011). doi:http://dx.doi.org/10.1021/ct200459v.
    • (2011) J. Chem. Theory Comput , vol.7 , pp. 3478
    • Yang, L.1    Sun, R.2    Hase, W.L.3
  • 31
    • 35648938704 scopus 로고    scopus 로고
    • Combined experimental and theoretical study on the nature and the metastable decay pathways of the amino acid ion fragment [M - H]
    • H. Flosadóttir, S. Denifl, F. Zappa, N. Wendt, A. Mauracher, A. Bacher, H. Jónsson, T. Märk, P. Scheier and O. Ingólfsson, "Combined experimental and theoretical study on the nature and the metastable decay pathways of the amino acid ion fragment [M - H]-", Chem. Int. Ed. 46, 8057 (2007). doi:http://dx.doi.org/10.1002/anie.200703327.
    • (2007) Chem. Int. Ed. , vol.46 , pp. 8057
    • Flosadóttir, H.1    Denifl, S.2    Zappa, F.3    Wendt, N.4    Mauracher, A.5    Bacher, A.6    Jónsson, H.7    Märk, T.8    Scheier, P.9    Ingólfsson, O.10
  • 32
    • 80051713293 scopus 로고    scopus 로고
    • Experimental and theoretical study of the metastable decay of negatively charged nucleosides in the gas phase
    • H.D. Flosadottir, H. Jonsson, S.T. Sigurdsson and O. Ingolfsson, "Experimental and theoretical study of the metastable decay of negatively charged nucleosides in the gas phase", Phys. Chem. Chem. Phys. 13, 15283 (2011). doi:http://dx.doi.org/10.1039/c1cp21298b.
    • (2011) Phys. Chem. Chem. Phys , vol.13 , pp. 15283
    • Flosadottir, H.D.1    Jonsson, H.2    Sigurdsson, S.T.3    Ingolfsson, O.4
  • 33
    • 84908065239 scopus 로고    scopus 로고
    • First principles calculation of electron ionization mass spectra for selected organic drug molecules
    • C.A. Bauer and S. Grimme, "First principles calculation of electron ionization mass spectra for selected organic drug molecules", Org. Biomol. Chem. 12, 8737 (2014). doi:http://dx.doi.org/10.1039/C4OB01668H.
    • (2014) Org. Biomol. Chem , vol.12 , pp. 8737
    • Bauer, C.A.1    Grimme, S.2
  • 34
    • 84916623785 scopus 로고    scopus 로고
    • Elucidation of electron ionizationinduced fragmentations of adenine by semiempirical and density functional molecular dynamics
    • C.A. Bauer and S. Grimme, "Elucidation of electron ionizationinduced fragmentations of adenine by semiempirical and density functional molecular dynamics", J. Phys. Chem. A 118, 11479 (2014). doi:http://dx.doi.org/10.1021/jp505299p.
    • (2014) J. Phys. Chem. A , vol.118 , pp. 11479
    • Bauer, C.A.1    Grimme, S.2
  • 35
    • 0037170886 scopus 로고    scopus 로고
    • REMPI spectroscopy of cytosine
    • E. Nir, M. Müller, L. Grace and M. de Vries, "REMPI spectroscopy of cytosine", Chem. Phys. Lett. 355, 59 (2002). doi:http://dx.doi.org/10.1016/S0009-2614(02)00180-X.
    • (2002) Chem. Phys. Lett , vol.355 , pp. 59
    • Nir, E.1    Müller, M.2    Grace, L.3    Vries, M.D.4
  • 36
    • 33744946042 scopus 로고    scopus 로고
    • Four tautomers of isolated guanine from infrared laser spectroscopy in helium nanodroplets
    • M.Y. Choi and R.E. Miller, "Four tautomers of isolated guanine from infrared laser spectroscopy in helium nanodroplets", J. Am. Chem. Soc. 128, 7320 (2006).doi:http://dx.doi.org/10.1021/ja060741l.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 7320
    • Choi, M.Y.1    Miller, R.E.2
  • 39
    • 65649148653 scopus 로고    scopus 로고
    • Experimental observation of guaninetautomers with VUV photoionization
    • J. Zhou, O. Kostko, C. Nicolas, X. Tang, L. Belau, M.S. de Vries and M. Ahmed, "Experimental observation of guaninetautomers with VUV photoionization", J. Phys. Chem. A 113, 4829-4832 (2009). doi:http://dx.doi.org/10.1021/jp811107x.
    • (2009) J. Phys. Chem. A , vol.113 , pp. 4829-4832
    • Zhou, J.1    Kostko, O.2    Nicolas, C.3    Tang, X.4    Belau, L.5    Vries, M.S.D.6    Ahmed, M.7
  • 40
    • 84962432615 scopus 로고    scopus 로고
    • Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution Part 1. Cytosine
    • S.A. Trygubenko, T.V. Bogdan, M. Rueda, M. Orozco, F.J. Luque, I. Sponer, P. Slavicek and P.Hobza, "Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution Part 1. Cytosine", Phys. Chem. Chem. Phys. 4, 4192 (2002). doi:http://dx.doi.org/10.1039/b202156k.
    • (2002) Phys. Chem. Chem. Phys , vol.4 , pp. 4192
    • Trygubenko, S.A.1    Bogdan, T.V.2    Rueda, M.3    Orozco, M.4    Luque, F.J.5    Sponer, I.6    Slavicek, P.7    Hobza, P.8
  • 41
    • 0037149133 scopus 로고    scopus 로고
    • Relative stabilities of three low-energy tautomers of cytosine: A coupled cluster electron cor-relation study
    • G. Fogarasi, "Relative stabilities of three low-energy tautomers of cytosine: A coupled cluster electron correlation study", J. Phys. Chem. A 106, 1381 (2002). doi:http://dx.doi.org/10.1021/jp013067x.
    • (2002) J. Phys. Chem. A , vol.106 , pp. 1381
    • Fogarasi, G.1
  • 42
    • 78649617504 scopus 로고    scopus 로고
    • Electronic structure and spectroscopy of nucleic acid bases: Ionization energies, ionization-induced structural changes, and photoelectronspectra
    • K.B. Bravaya, O. Kostko, S. Dolgikh, A. Landau, M. Ahmed and A.I. Krylov, "Electronic structure and spectroscopy of nucleic acid bases: ionization energies, ionization-induced structural changes, and photoelectronspectra", J. Phys. Chem. A 114, 12305 (2010). doi:http://dx.doi.org/10.1021/jp1063726.
    • (2010) J. Phys. Chem. A , vol.114 , pp. 12305
    • Bravaya, K.B.1    Kostko, O.2    Dolgikh, S.3    Landau, A.4    Ahmed, M.5    Krylov, A.I.6
  • 43
    • 0345763760 scopus 로고    scopus 로고
    • Systematic quantum chemical study of DNA-base tautomers
    • M. Piacenza and S. Grimme, "Systematic quantum chemical study of DNA-base tautomers", J. Comput. Chem. 25, 83 (2004). doi:http://dx.doi.org/10.1002/jcc.10365.
    • (2004) J. Comput. Chem , vol.25 , pp. 83
    • Piacenza, M.1    Grimme, S.2
  • 44
    • 33947510007 scopus 로고    scopus 로고
    • The guanine tautomer puzzle: Quantum chemical investigation of ground and excited states
    • C.M. Marian, "The guanine tautomer puzzle: quantum chemical investigation of ground and excited states", J. Phys. Chem. 111, 1545 (2007). doi:http://dx.doi.org/10.1021/jp068620v.
    • (2007) J. Phys. Chem , vol.111 , pp. 1545
    • Marian, C.M.1
  • 45
    • 33749632291 scopus 로고    scopus 로고
    • Near-UV resonant two-photon ionization spectroscopy of gas phase guanine: Evidence for the observation of three rare tautomers
    • M. Mons, F. Piuzzi, I. Dimicoli, L. Gorb and J. Leszczynski "Near-UV resonant two-photon ionization spectroscopy of gas phase guanine: evidence for the observation of three rare tautomers", J. Phys. Chem. A 110, 10921 (2006). doi:http://dx.doi.org/10.1021/jp063738x.
    • (2006) J. Phys. Chem. A , vol.110 , pp. 10921
    • Mons, M.1    Piuzzi, F.2    Dimicoli, I.3    Gorb, L.4    Leszczynski, J.5
  • 46
    • 0017130640 scopus 로고
    • Tautomerism in cytosine and 3-methylcytosine. A thermodynamic and kinetic study
    • M. Dreyfus, O. Bensaude, G. Dodin and J.E. Dubois, "Tautomerism in cytosine and 3-methylcytosine. A thermodynamic and kinetic study", J. Am. Chem. Soc. 98, 6338 (1976). doi:http://dx.doi.org/10.1021/ja00436a045.
    • (1976) J. Am. Chem. Soc , vol.98 , pp. 6338
    • Dreyfus, M.1    Bensaude, O.2    Dodin, G.3    Dubois, J.E.4
  • 47
    • 34247488789 scopus 로고    scopus 로고
    • The infrared spectra of uracil, thymine, and adenine in the gas phase
    • M.Y. Choi and R.E. Miller, "The infrared spectra of uracil, thymine, and adenine in the gas phase", J. Phys. Chem. A 111, 2475 (2007). doi:http://dx.doi.org/10.1016/S0009-2614(97)00245-5.
    • (2007) J. Phys. Chem. A , vol.111 , pp. 2475
    • Choi, M.Y.1    Miller, R.E.2
  • 48
    • 43049165466 scopus 로고    scopus 로고
    • A theoretical and experimental study of the near edge X-ray absorption fine structure (NEXAFS) and X-ray photoelectron spectra (XPS) of nucleobases: Thymine and adenine
    • O. Plekan, V. Feyer, R. Richter, M. Coreno, M. de Simone, K. Prince, A. Trofimov, E. Gromov, I. Zaytseva and J. Schirmer, "A theoretical and experimental study of the near edge X-ray absorption fine structure (NEXAFS) and X-ray photoelectron spectra (XPS) of nucleobases: Thymine and adenine", Chem. Phys. 347, 360 (2008). doi:http://dx.doi.org/10.1016/j.chemphys.2007.09.021.
    • (2008) Chem. Phys , vol.347 , pp. 360
    • Plekan, O.1    Feyer, V.2    Richter, R.3    Coreno, M.4    Simone, M.D.5    Prince, K.6    Trofimov, A.7    Gromov, E.8    Zaytseva, I.9    Schirmer, J.10
  • 49
    • 0242593713 scopus 로고    scopus 로고
    • Climbing the density functional ladder: Nonempirical meta-generalized gradient approximation designed for molecules and solids
    • J. Tao, J.P. Perdew, V.N. Staroverov and G.E. Scuseria, "Climbing the density functional ladder: nonempirical meta-generalized gradient approximation designed for molecules and solids", Phys. Rev. Lett. 91, 146401 (2003). doi:http://dx.doi.org/10.1103/PhysRevLett.91.146401.
    • (2003) Phys. Rev. Lett , vol.91 , pp. 146401
    • Tao, J.1    Perdew, J.P.2    Staroverov, V.N.3    Scuseria, G.E.4
  • 50
    • 77951680464 scopus 로고    scopus 로고
    • A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
    • S. Grimme, J. Antony, S. Ehrlich and H. Krieg, "A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu", J. Chem. Phys. 132, 154104 (2010). doi:http://dx.doi.org/10.1063/1.3382344.
    • (2010) J. Chem. Phys , vol.132 , pp. 154104
    • Grimme, S.1    Antony, J.2    Ehrlich, S.3    Krieg, H.4
  • 51
    • 79952943559 scopus 로고    scopus 로고
    • Effect of the damping function in dispersion corrected density functional theory
    • S. Grimme, S. Ehrlich, and L. Goerigk, "Effect of the damping function in dispersion corrected density functional theory", J. Comput. Chem. 32, 1456 (2011). doi:http://dx.doi.org/10.1002/jcc.21759.
    • (2011) J. Comput. Chem , vol.32 , pp. 1456
    • Grimme, S.1    Ehrlich, S.2    Goerigk, L.3
  • 52
    • 28344439628 scopus 로고    scopus 로고
    • A density-functional model of the dispersion interaction
    • A.D. Becke and E.R. Johnson, "A density-functional model of the dispersion interaction", J. Chem. Phys. 123, 154101 (2005). doi:http://dx.doi.org/10.1063/1.2065267.
    • (2005) J. Chem. Phys , vol.123 , pp. 154101
    • Becke, A.D.1    Johnson, E.R.2
  • 53
    • 26244461462 scopus 로고    scopus 로고
    • Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy
    • F. Weigend and R. Ahlrichs, "Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy", Phys. Chem. Chem. Phys. 7, 3297 (2005). doi:http://dx.doi.org/10.1039/b508541a.
    • (2005) Phys. Chem. Chem. Phys , vol.7 , pp. 3297
    • Weigend, F.1    Ahlrichs, R.2
  • 57
    • 78651378092 scopus 로고    scopus 로고
    • Revisiting the atomic natural orbital approach for basis sets: Robust systematic basis sets for explicitly correlated and conventional correlated ab initio methods?
    • F. Neese and E.F.J. Valeev, "Revisiting the atomic natural orbital approach for basis sets: robust systematic basis sets for explicitly correlated and conventional correlated ab initio methods?", Chem. Theory Comput. 7, 33 (2011). doi:http://dx.doi.org/10.1021/ct100396y.
    • (2011) Chem. Theory Comput , vol.7 , pp. 33
    • Neese, F.1    Valeev, E.F.J.2
  • 58
    • 33746614482 scopus 로고
    • Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen
    • T.H. Dunning, "Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen", J. Chem. Phys. 90, 1007 (1989). doi:http://dx.doi.org/10.1063/1.456153.
    • (1989) J. Chem. Phys , vol.90 , pp. 1007
    • Dunning, T.H.1
  • 59
    • 84961166694 scopus 로고    scopus 로고
    • ORCA - an ab initio, density functional and semiempirical program package
    • Ver. 2.9 (Rev 0), Mülheim, Germany
    • F. Neese, ORCA - an ab initio, Density Functional and Semiempirical Program Package, Ver. 2.9 (Rev 0), Max Planck Institute for Bioinorganic Chemistry, Mülheim, Germany (2011).
    • (2011) Max Planck Institute for Bioinorganic Chemistry
    • Neese, F.1
  • 60
    • 84859061927 scopus 로고    scopus 로고
    • The ORCA program system
    • F. Neese, "The ORCA program system", WIREs Comput. Mol. Sci. 2, 73 (2012). doi:http://dx.doi.org/10.1002/wcms.81.
    • (2012) WIREs Comput. Mol. Sci , vol.2 , pp. 73
    • Neese, F.1
  • 61
    • 0034389977 scopus 로고    scopus 로고
    • Orthogonalization corrections for semiempirical methods
    • W. Weber and W Thiel, "Orthogonalization corrections for semiempirical methods", Theor. Chem. Acc. 103, 495 (2000). doi:http://dx.doi.org/10.1007/s002149900083.
    • (2000) Theor. Chem. Acc , vol.103 , pp. 495
    • Weber, W.1    Thiel, W.2
  • 62
    • 22944467757 scopus 로고
    • Computer "experiments" on classical fluids. I. Thermodynamicalproperties of Lennard-Jones molecules
    • L. Verlet, " Computer "experiments" on classical fluids. I. Thermodynamicalproperties of Lennard-Jones molecules", Phys. Rev. 159, 98 (1967). doi:http://dx.doi.org/10.1103/PhysRev.159.98.
    • (1967) Phys. Rev , vol.159 , pp. 98
    • Verlet, L.1
  • 63
    • 1542779956 scopus 로고    scopus 로고
    • Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties
    • M. Elstner, D. Porezag, G. Jungnickel, J. Elsner, M. Haugk, T. Frauenheim, S. Suhai and G. Seifert, "Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties", Phys. Rev. B 58, 7260 (1998, ). doi:http://dx.doi.org/10.1103/PhysRevB.58.7260.
    • (1998) Phys. Rev. B , vol.58 , pp. 7260
    • Elstner, M.1    Porezag, D.2    Jungnickel, G.3    Elsner, J.4    Haugk, M.5    Frauenheim, T.6    Suhai, S.7    Seifert, G.8
  • 64
    • 0035932162 scopus 로고    scopus 로고
    • Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-Theory based treatment
    • M. Elstner, P. Hobza, T. Frauenheim, S. Suhai and E. Kaxiras, "Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-Theory based treatment", J. Chem. Phys. 114, 5149 (2001). doi:http://dx.doi.org/10.1063/1.1329889.
    • (2001) J. Chem. Phys , vol.114 , pp. 5149
    • Elstner, M.1    Hobza, P.2    Frauenheim, T.3    Suhai, S.4    Kaxiras, E.5
  • 65
    • 84872145856 scopus 로고    scopus 로고
    • Parametrization and benchmark of DFTB3 for organic molecules
    • M. Gaus, A. Goez and M. Elstner, "Parametrization and benchmark of DFTB3 for organic molecules", J. Chem. Theory Comput. 9, 338 (2013). doi:http://dx.doi.org/10.1021/ct300849w.
    • (2013) J. Chem. Theory Comput , vol.9 , pp. 338
    • Gaus, M.1    Goez, A.2    Elstner, M.3
  • 66
    • 0004344770 scopus 로고
    • The Benjamin/Cummings Publishing Company Inc.: Menlo Park, California (,).
    • N. J. Turro, Modern Molecular Photochemistry. The Benjamin/Cummings Publishing Company Inc.: Menlo Park, California (1978).
    • (1978) Modern Molecular Photochemistry
    • Turro, N.J.1
  • 67
    • 33744611491 scopus 로고
    • Time-dependent correlations in a solvable ferromagnetic model
    • N.D. Mermin, "Time-dependent correlations in a solvable ferromagnetic model", Phys. Rev. 134, A112 (1964). doi:http://dx.doi.org/10.1103/PhysRev.134.A112.
    • (1964) Phys. Rev , vol.134 , pp. A112
    • Mermin, N.D.1
  • 68
    • 0030588908 scopus 로고    scopus 로고
    • Fractional occupation numbers and density functional energy gradients within the linear combination of Gaussian-Type orbitals approach
    • R.W. Warren and B.I. Dunlap, "Fractional occupation numbers and density functional energy gradients within the linear combination of Gaussian-Type orbitals approach", Chem. Phys. Lett. 262, 384 (1996). doi:http://dx.doi.org/10.1016/0009-2614(96)01107-4.
    • (1996) Chem. Phys. Lett , vol.262 , pp. 384
    • Warren, R.W.1    Dunlap, B.I.2
  • 69
    • 0001753384 scopus 로고    scopus 로고
    • Improving self-consistent field convergence by varying occupation numbers
    • A.D. Rabuck and G.E. Scuseria, "Improving self-consistent field convergence by varying occupation numbers", J. Chem. Phys. 110, 695 (1999). doi:http://dx.doi.org/10.1063/1.478177.
    • (1999) J. Chem. Phys , vol.110 , pp. 695
    • Rabuck, A.D.1    Scuseria, G.E.2
  • 70
    • 84874829967 scopus 로고    scopus 로고
    • Version 7.0. Max Planck Institute für Kohlenforschung, Mülheim, Germany (
    • W. Thiel, MNDO2005, Version 7.0. Max Planck Institute für Kohlenforschung, Mülheim, Germany (2005).
    • (2005) MNDO2005
    • Thiel, W.1
  • 71
    • 34447127776 scopus 로고    scopus 로고
    • DFTB+, a sparse matrix-based implementation of the DFTB method
    • B. Aradi, B. Hourahine and T. Frauenheim, "DFTB+, a sparse matrix-based implementation of the DFTB method", J. Phys. Chem. A 111, 5678 (2007, ). doi:http://dx.doi.org/10.1021/jp070186p.
    • (2007) J. Phys. Chem. A , vol.111 , pp. 5678
    • Aradi, B.1    Hourahine, B.2    Frauenheim, T.3
  • 72
    • 84870414017 scopus 로고    scopus 로고
    • NIST chemistry webbook
    • Ed by P.J. Linstrom and W.G. Mallard. National Institute of Standards and Technology, Gaithersburg, Maryland, , (retrieved 15 May 2014).
    • S.E. Stein, in NIST Chemistry WebBook, NIST Standard Reference Database Number 69, Ed by P.J. Linstrom and W.G. Mallard. National Institute of Standards and Technology, Gaithersburg, Maryland, http://webbook.nist.gov (retrieved 15 May 2014).
    • NIST Standard Reference Database Number 69
    • Stein, S.E.1
  • 73
    • 0000881748 scopus 로고
    • Optimization and testing of mass spectral library search algorithms for compound identification
    • S.E. Stein and D.R. Scott, "Optimization and testing of mass spectral library search algorithms for compound identification", J. Am. Soc. Mass Spectrom. 5, 859 (1994). doi:http://dx.doi.org/10.1016/1044-0305(94)87009-8.
    • (1994) J. Am. Soc. Mass Spectrom , vol.5 , pp. 859
    • Stein, S.E.1    Scott, D.R.2
  • 74
    • 85172017153 scopus 로고
    • Synthesen in der hydroaromatischen Reihe, VI. Mitteilung, Kurt Alder und Gerhard Stein: Über partiell hydrierte Naphtho- und Anthrachinone mit Wasserstoff in g- bzw. D-Stellung. (Mitbearbeitet von Paul Pries und Hans Winckler)
    • O. Diels and K. Alder, "Synthesen in der hydroaromatischen Reihe, VI. Mitteilung, Kurt Alder und Gerhard Stein: Über partiell hydrierte Naphtho- und Anthrachinone mit Wasserstoff in g- bzw. d-Stellung. (Mitbearbeitet von Paul Pries und Hans Winckler)", Chem. Ber. 62, 2337 (1929). doi:http://dx.doi.org/10.1002/cber.19290620872.
    • (1929) Chem. Ber , vol.62 , pp. 2337
    • Diels, O.1    Alder, K.2
  • 75
    • 0001202062 scopus 로고
    • The reverse Diels-Alder or retrodiene reaction
    • H. Kwart and K. King, "The reverse Diels-Alder or retrodiene reaction", Chem. Rev. 68, 415 (1968). doi:http://dx.doi.org/10.1021/cr60254a002.
    • (1968) Chem. Rev , vol.68 , pp. 415
    • Kwart, H.1    King, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.