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Volumn 54, Issue 50, 2015, Pages 7355-7364

Evaluating Sense Codon Reassignment with a Simple Fluorescence Screen

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CODES (SYMBOLS); ESCHERICHIA COLI; FLUORESCENCE; PROTEINS;

EID: 84951731246     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/acs.biochem.5b00870     Document Type: Article
Times cited : (19)

References (52)
  • 2
    • 0028926047 scopus 로고
    • Energetics of bacterial-growth - Balance of anabolic and catabolic reactions
    • Russell, J. B. and Cook, G. M. (1995) Energetics of bacterial-growth-balance of anabolic and catabolic reactions Microbiol. Rev. 59, 48-62
    • (1995) Microbiol. Rev. , vol.59 , pp. 48-62
    • Russell, J.B.1    Cook, G.M.2
  • 3
    • 0015910716 scopus 로고
    • A theoretical study on the amount of ATP required for synthesis of microbial cell material
    • Stouthamer, A. H. (1973) A theoretical study on the amount of ATP required for synthesis of microbial cell material Antonie van Leeuwenhoek 39, 545-565 10.1007/BF02578899
    • (1973) Antonie Van Leeuwenhoek , vol.39 , pp. 545-565
    • Stouthamer, A.H.1
  • 4
    • 1242309517 scopus 로고    scopus 로고
    • Decoding the genome: A modified view
    • Agris, P. F. (2004) Decoding the genome: a modified view Nucleic Acids Res. 32, 223-238 10.1093/nar/gkh185
    • (2004) Nucleic Acids Res. , vol.32 , pp. 223-238
    • Agris, P.F.1
  • 5
    • 63449132404 scopus 로고    scopus 로고
    • Origin and evolution of the genetic code: The universal enigma
    • Koonin, E. V. and Novozhilov, A. S. (2009) Origin and evolution of the genetic code: the universal enigma IUBMB Life 61, 99-111 10.1002/iub.146
    • (2009) IUBMB Life , vol.61 , pp. 99-111
    • Koonin, E.V.1    Novozhilov, A.S.2
  • 6
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: The causes and consequences of codon bias
    • Plotkin, J. B. and Kudla, G. (2011) Synonymous but not the same: the causes and consequences of codon bias Nat. Rev. Genet. 12, 32-42 10.1038/nrg2899
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 7
    • 0035234558 scopus 로고    scopus 로고
    • Rewiring the keyboard evolvability of the genetic code
    • Knight, R. D., Freeland, S. J., and Landweber, L. F. (2001) Rewiring the keyboard evolvability of the genetic code Nat. Rev. Genet. 2, 49-58 10.1038/35047500
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 49-58
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 8
    • 77953643054 scopus 로고    scopus 로고
    • Adding new chemistries to the genetic code
    • (Kornberg, R. D. Raetz, C. R. H. Rothman, J. E. and Thorner, J. W. Eds.) Annual Reviews, Palo Alto, CA
    • Liu, C. C. and Schultz, P. G. (2010) Adding new chemistries to the genetic code. In Annual Review of Biochemistry (Kornberg, R. D., Raetz, C. R. H., Rothman, J. E., and Thorner, J. W., Eds.) Vol. 79, pp 413-444, Annual Reviews, Palo Alto, CA.
    • (2010) Annual Review of Biochemistry , vol.79 , pp. 413-444
    • Liu, C.C.1    Schultz, P.G.2
  • 9
    • 0024968835 scopus 로고
    • A general method for site-specific incorporation of unnatural amino acids into proteins
    • Noren, C. J., Anthony-Cahill, S. J., Griffith, M. C., and Schultz, P. G. (1989) A general method for site-specific incorporation of unnatural amino acids into proteins Science 244, 182-188 10.1126/science.2649980
    • (1989) Science , vol.244 , pp. 182-188
    • Noren, C.J.1    Anthony-Cahill, S.J.2    Griffith, M.C.3    Schultz, P.G.4
  • 10
    • 0000652848 scopus 로고
    • Biosynthetic site-specific incorporation of a non-natural amino acid into a polypeptide
    • Bain, J. D., Glabe, C. G., Dix, T. A., Chamberlin, A. R., and Diala, E. S. (1989) Biosynthetic site-specific incorporation of a non-natural amino acid into a polypeptide J. Am. Chem. Soc. 111, 8013-8014 10.1021/ja00202a052
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 8013-8014
    • Bain, J.D.1    Glabe, C.G.2    Dix, T.A.3    Chamberlin, A.R.4    Diala, E.S.5
  • 11
    • 0031937870 scopus 로고    scopus 로고
    • Expansion of the genetic code: Site-directed p-fluoro-phenylalanine incorporation in Escherichia coli
    • Furter, R. (1998) Expansion of the genetic code: Site-directed p-fluoro-phenylalanine incorporation in Escherichia coli Protein Sci. 7, 419-426 10.1002/pro.5560070223
    • (1998) Protein Sci. , vol.7 , pp. 419-426
    • Furter, R.1
  • 15
    • 0027556206 scopus 로고
    • Synthesis of a genetically engineered repetitive polypeptide containing periodic selenomethionine residues
    • Dougherty, M. J., Kothakota, S., Mason, T. L., Tirrell, D. A., and Fournier, M. J. (1993) Synthesis of a genetically engineered repetitive polypeptide containing periodic selenomethionine residues Macromolecules 26, 1779-1781 10.1021/ma00059a045
    • (1993) Macromolecules , vol.26 , pp. 1779-1781
    • Dougherty, M.J.1    Kothakota, S.2    Mason, T.L.3    Tirrell, D.A.4    Fournier, M.J.5
  • 16
    • 0029064088 scopus 로고
    • High-level biosynthetic substitution of methionine in proteins by its analogs 2-aminohexanoic acid, selenomethionine, telluromethionine and ethionine in Escherichia coli
    • Budisa, N., Steipe, B., Demange, P., Eckerskorn, C., Kellermann, J., and Huber, R. (1995) High-level biosynthetic substitution of methionine in proteins by its analogs 2-aminohexanoic acid, selenomethionine, telluromethionine and ethionine in Escherichia coli Eur. J. Biochem. 230, 788-796 10.1111/j.1432-1033.1995.tb20622.x
    • (1995) Eur. J. Biochem. , vol.230 , pp. 788-796
    • Budisa, N.1    Steipe, B.2    Demange, P.3    Eckerskorn, C.4    Kellermann, J.5    Huber, R.6
  • 18
    • 0037870583 scopus 로고    scopus 로고
    • Breaking the degeneracy of the genetic code
    • Kwon, I., Kirshenbaum, K., and Tirrell, D. A. (2003) Breaking the degeneracy of the genetic code J. Am. Chem. Soc. 125, 7512-7513 10.1021/ja0350076
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 7512-7513
    • Kwon, I.1    Kirshenbaum, K.2    Tirrell, D.A.3
  • 19
    • 84929584773 scopus 로고    scopus 로고
    • Tailoring the substrate specificity of yeast phenylalanyl-tRNA synthetase toward a phenylalanine analog using multiple-site-specific incorporation
    • Kwon, I. and Lim, S. I. (2015) Tailoring the substrate specificity of yeast phenylalanyl-tRNA synthetase toward a phenylalanine analog using multiple-site-specific incorporation ACS Synth. Biol. 4, 634-643 10.1021/sb500309r
    • (2015) ACS Synth. Biol. , vol.4 , pp. 634-643
    • Kwon, I.1    Lim, S.I.2
  • 20
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond, D. A. and Wilke, C. O. (2008) Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution Cell 134, 341-352 10.1016/j.cell.2008.05.042
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 21
    • 64049115873 scopus 로고    scopus 로고
    • A tipping point for mistranslation and disease
    • Schimmel, P. and Guo, M. (2009) A tipping point for mistranslation and disease Nat. Struct. Mol. Biol. 16, 348-349 10.1038/nsmb0409-348
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 348-349
    • Schimmel, P.1    Guo, M.2
  • 22
    • 84924192559 scopus 로고    scopus 로고
    • Emerging roles of tRNA in adaptive translation, signalling dynamics and disease
    • Kirchner, S. and Ignatova, Z. (2014) Emerging roles of tRNA in adaptive translation, signalling dynamics and disease Nat. Rev. Genet. 16, 98-112 10.1038/nrg3861
    • (2014) Nat. Rev. Genet. , vol.16 , pp. 98-112
    • Kirchner, S.1    Ignatova, Z.2
  • 23
    • 0013936167 scopus 로고
    • Codon-Anticodon Pairing - Wobble Hypothesis
    • Crick, F. H. C. (1966) Codon-Anticodon Pairing-Wobble Hypothesis J. Mol. Biol. 19, 548-555 10.1016/S0022-2836(66)80022-0
    • (1966) J. Mol. Biol. , vol.19 , pp. 548-555
    • Crick, F.H.C.1
  • 25
    • 0033557138 scopus 로고    scopus 로고
    • Thermodynamics of RNA hairpins containing single internal mismatches
    • Meroueh, M. and Chow, C. S. (1999) Thermodynamics of RNA hairpins containing single internal mismatches Nucleic Acids Res. 27, 1118-1125 10.1093/nar/27.4.1118
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1118-1125
    • Meroueh, M.1    Chow, C.S.2
  • 26
    • 3643114575 scopus 로고    scopus 로고
    • Universal rules and idiosyncratic features in tRNA identity
    • Giege, R., Sissler, M., and Florentz, C. (1998) Universal rules and idiosyncratic features in tRNA identity Nucleic Acids Res. 26, 5017-5035 10.1093/nar/26.22.5017
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5017-5035
    • Giege, R.1    Sissler, M.2    Florentz, C.3
  • 27
    • 33645462291 scopus 로고    scopus 로고
    • Phage display a practical approach
    • (Clackson, T. and Lowman, H. B. Eds.) Oxford University Press, Oxford, U.K.
    • Sidhu, S. S. and Weiss, G. A. (2004) Phage display a practical approach. In Practical approach series (Clackson, T. and Lowman, H. B., Eds.) Oxford University Press, Oxford, U.K.
    • (2004) Practical Approach Series
    • Sidhu, S.S.1    Weiss, G.A.2
  • 28
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T. A. (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection Proc. Natl. Acad. Sci. U. S. A. 82, 488-492 10.1073/pnas.82.2.488
    • (1985) Proc. Natl. Acad. Sci. U. S. A. , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 30
    • 79955574923 scopus 로고    scopus 로고
    • version 1.3r1 () Schrödinger, LLC, Portland, OR
    • The PyMOL Molecular Graphics System, version 1.3r1 (2010) Schrödinger, LLC, Portland, OR.
    • (2010) The PyMOL Molecular Graphics System
  • 31
    • 0030087710 scopus 로고    scopus 로고
    • Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer
    • Heim, R. and Tsien, R. Y. (1996) Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer Curr. Biol. 6, 178-182 10.1016/S0960-9822(02)00450-5
    • (1996) Curr. Biol. , vol.6 , pp. 178-182
    • Heim, R.1    Tsien, R.Y.2
  • 35
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer, E. B. and Farabaugh, P. J. (2006) The frequency of translational misreading errors in E. coli is largely determined by tRNA competition RNA 13, 87-96 10.1261/rna.294907
    • (2006) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 36
    • 0034831756 scopus 로고    scopus 로고
    • Major tyrosine identity determinants in Methanococcus jannaschii and Saccharomyces cerevisiae tRNA(Tyr) conserved but expressed differently
    • Fechter, P., Rudinger-Thirion, J., Tukalo, M., and Giege, R. (2001) Major tyrosine identity determinants in Methanococcus jannaschii and Saccharomyces cerevisiae tRNA(Tyr) conserved but expressed differently Eur. J. Biochem. 268, 761-767 10.1046/j.1432-1327.2001.01931.x
    • (2001) Eur. J. Biochem. , vol.268 , pp. 761-767
    • Fechter, P.1    Rudinger-Thirion, J.2    Tukalo, M.3    Giege, R.4
  • 37
    • 73149104141 scopus 로고    scopus 로고
    • An enhanced system for unnatural amino acid mutagenesis in E. coli
    • Young, T. S., Ahmad, I., Yin, J. A., and Schultz, P. G. (2010) An enhanced system for unnatural amino acid mutagenesis in E. coli J. Mol. Biol. 395, 361-374 10.1016/j.jmb.2009.10.030
    • (2010) J. Mol. Biol. , vol.395 , pp. 361-374
    • Young, T.S.1    Ahmad, I.2    Yin, J.A.3    Schultz, P.G.4
  • 38
    • 84874993348 scopus 로고    scopus 로고
    • A versatile platform for single- and multiple-unnatural amino acid mutagenesis in Escherichia coli
    • Chatterjee, A., Sun, S. B., Furman, J. L., Xiao, H., and Schultz, P. G. (2013) A versatile platform for single- and multiple-unnatural amino acid mutagenesis in Escherichia coli Biochemistry 52, 1828-1837 10.1021/bi4000244
    • (2013) Biochemistry , vol.52 , pp. 1828-1837
    • Chatterjee, A.1    Sun, S.B.2    Furman, J.L.3    Xiao, H.4    Schultz, P.G.5
  • 39
    • 33645325418 scopus 로고    scopus 로고
    • Efficient incorporation of unnatural amino acids into proteins in Escherichia coli
    • Ryu, Y. H. and Schultz, P. G. (2006) Efficient incorporation of unnatural amino acids into proteins in Escherichia coli Nat. Methods 3, 263-265 10.1038/nmeth864
    • (2006) Nat. Methods , vol.3 , pp. 263-265
    • Ryu, Y.H.1    Schultz, P.G.2
  • 40
    • 0031714985 scopus 로고    scopus 로고
    • Reassigning cysteine in the genetic code of Escherichia coli
    • Doring, V. and Marliere, P. (1998) Reassigning cysteine in the genetic code of Escherichia coli Genetics 150, 543-551
    • (1998) Genetics , vol.150 , pp. 543-551
    • Doring, V.1    Marliere, P.2
  • 41
    • 0024722501 scopus 로고
    • Errors and alternatives in reading the universal genetic-code
    • Parker, J. (1989) Errors and alternatives in reading the universal genetic-code Microbiol. Rev. 53, 273-298
    • (1989) Microbiol. Rev. , vol.53 , pp. 273-298
    • Parker, J.1
  • 42
    • 0037099742 scopus 로고    scopus 로고
    • TadA, an essential tRNA-specific adenosine deaminase from Escherichia coli
    • Wolf, J., Gerber, A. P., and Keller, W. (2002) tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli EMBO J. 21, 3841-3851 10.1093/emboj/cdf362
    • (2002) EMBO J. , vol.21 , pp. 3841-3851
    • Wolf, J.1    Gerber, A.P.2    Keller, W.3
  • 43
    • 0034833416 scopus 로고    scopus 로고
    • A general approach for the generation of orthogonal tRNAs
    • Wang, L. and Schultz, P. G. (2001) A general approach for the generation of orthogonal tRNAs Chem. Biol. 8, 883-890 10.1016/S1074-5521(01)00063-1
    • (2001) Chem. Biol. , vol.8 , pp. 883-890
    • Wang, L.1    Schultz, P.G.2
  • 44
    • 70449597245 scopus 로고    scopus 로고
    • Evolution of amber suppressor trnas for efficient bacterial production of proteins containing nonnatural amino acids
    • Guo, J. T., Melancon, C. E., Lee, H. S., Groff, D., and Schultz, P. G. (2009) Evolution of amber suppressor trnas for efficient bacterial production of proteins containing nonnatural amino acids Angew. Chem., Int. Ed. 48, 9148-9151 10.1002/anie.200904035
    • (2009) Angew. Chem., Int. Ed. , vol.48 , pp. 9148-9151
    • Guo, J.T.1    Melancon, C.E.2    Lee, H.S.3    Groff, D.4    Schultz, P.G.5
  • 45
    • 84925606144 scopus 로고    scopus 로고
    • Fine-tuning interaction between aminoacyl-tRNA synthetase and tRNA for efficient synthesis of proteins containing unnatural amino acids
    • Wang, N. X., Ju, T., Niu, W., and Guo, J. T. (2015) Fine-tuning interaction between aminoacyl-tRNA synthetase and tRNA for efficient synthesis of proteins containing unnatural amino acids ACS Synth. Biol. 4, 207-212 10.1021/sb500195w
    • (2015) ACS Synth. Biol. , vol.4 , pp. 207-212
    • Wang, N.X.1    Ju, T.2    Niu, W.3    Guo, J.T.4
  • 46
    • 77950824636 scopus 로고    scopus 로고
    • De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs
    • Neumann, H., Slusarczyk, A. L., and Chin, J. W. (2010) De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs J. Am. Chem. Soc. 132, 2142-2144 10.1021/ja9068722
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 2142-2144
    • Neumann, H.1    Slusarczyk, A.L.2    Chin, J.W.3
  • 48
    • 0035917812 scopus 로고    scopus 로고
    • Expanding the genetic code of Escherichia coli
    • Wang, L., Brock, A., Herberich, B., and Schultz, P. G. (2001) Expanding the genetic code of Escherichia coli Science 292, 498-500 10.1126/science.1060077
    • (2001) Science , vol.292 , pp. 498-500
    • Wang, L.1    Brock, A.2    Herberich, B.3    Schultz, P.G.4
  • 49
    • 0043028469 scopus 로고    scopus 로고
    • Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression
    • Anderson, J. C. and Schultz, P. G. (2003) Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression Biochemistry 42, 9598-9608 10.1021/bi034550w
    • (2003) Biochemistry , vol.42 , pp. 9598-9608
    • Anderson, J.C.1    Schultz, P.G.2
  • 50
    • 0344237369 scopus 로고    scopus 로고
    • An archaebacteria-derived glutamyl-tRNA synthetase and tRNA pair for unnatural amino acid mutagenesis of proteins in Escherichia coli
    • Santoro, S. W., Anderson, J. C., Lakshman, V., and Schultz, P. G. (2003) An archaebacteria-derived glutamyl-tRNA synthetase and tRNA pair for unnatural amino acid mutagenesis of proteins in Escherichia coli Nucleic Acids Res. 31, 6700-6709 10.1093/nar/gkg903
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6700-6709
    • Santoro, S.W.1    Anderson, J.C.2    Lakshman, V.3    Schultz, P.G.4
  • 51
    • 78049389374 scopus 로고    scopus 로고
    • Rational design of an orthogonal tryptophanyl nonsense suppressor tRNA
    • Hughes, R. A. and Ellington, A. D. (2010) Rational design of an orthogonal tryptophanyl nonsense suppressor tRNA Nucleic Acids Res. 38, 6813-6830 10.1093/nar/gkq521
    • (2010) Nucleic Acids Res. , vol.38 , pp. 6813-6830
    • Hughes, R.A.1    Ellington, A.D.2
  • 52
    • 84866283617 scopus 로고    scopus 로고
    • Evolution of multiple, mutually orthogonal prolyl-tRNA synthetase/tRNA pairs for unnatural amino acid mutagenesis in Escherichia coli
    • Chatterjee, A., Xiao, H., and Schultz, P. G. (2012) Evolution of multiple, mutually orthogonal prolyl-tRNA synthetase/tRNA pairs for unnatural amino acid mutagenesis in Escherichia coli Proc. Natl. Acad. Sci. U. S. A. 109, 14841-14846 10.1073/pnas.1212454109
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 14841-14846
    • Chatterjee, A.1    Xiao, H.2    Schultz, P.G.3


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