New insights on the organization and regulation of the fatty acid biosynthetic network in the model higher plant Arabidopsis thaliana

Biochimie

Volumn 120, Issue , 2016, Pages 3-8

  Troncoso Ponce, Manuel Adrián ^a,b   Nikovics, Krisztina ^a,b   Marchive, Chloé ^a,b   Lepiniec, Loïc ^a,b   Baud, Sébastien ^a,b  

^a INSTITUT JEAN PIERRE BOURGIN   (France)

^b AGROPARISTECH   (France)

Author keywords

Arabidopsis; Biosynthetic pathway; Chloroplast; Fatty acids; Regulation

Indexed keywords

FATTY ACID;

ARABIDOPSIS THALIANA; BINDING SITE; BIOCHEMISTRY; CARBON STORAGE; CONFORMATIONAL TRANSITION; ENZYME ACTIVITY; FATTY ACID ANALYSIS; FATTY ACID SYNTHESIS; FEEDBACK SYSTEM; FUNCTIONAL GENOMICS; IN VITRO STUDY; MOLECULAR BIOLOGY; NONHUMAN; PLANT CELL; PLANT GENE; PLANT GENOME; PLASTID; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; PROTEOMICS; QUANTITATIVE ANALYSIS; REVIEW; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STROMA; THYLAKOID; ARABIDOPSIS; BIOLOGICAL MODEL; BIOSYNTHESIS; GENETICS; LIPID METABOLISM; METABOLISM; PHYSIOLOGY;

ARABIDOPSIS; FATTY ACIDS; LIPID METABOLISM; MODELS, BIOLOGICAL;

EID: 84951569956     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2015.05.013     Document Type: Short Survey

References (38)

1. J.L. Harwood Recent advances in the biosynthesis of plant fatty acids Biochem. Biophys. Acta 1301 1996 7 56
2. J.M. Dyer, S. Stymne, A.G. Green, and A.S. Carlsson High-value oils from plants Plant J. 54 2008 640 644
3. Y. Li-Beisson, B. Shorrosh, F. Beisson, M.X. Andersson, V. Arondel, P.D. Bates, S. Baud, D. Bird, A. DeBono, T.P. Durrett, R.B. Franke, I.A. Graham, K. Katayama, A.A. Kelly, T. Larson, J.E. Markham, M. Miquel, I. Molina, I. Nishida, O. Rowland, L. Samuels, K.M. Schmid, H. Wada, R. Welti, C. Xu, R. Zallot, and J. Ohlrogge Acyl-lipid metabolism Arabidopsis Book 8 2010 1 65
4. S. Baud, and L. Lepiniec Compared analysis of the regulatory systems controlling lipogenesis in hepatocytes of mice and in maturing oilseeds of Arabidopsis C.R. Biol 331 2008 737 745
5. U.S. Ramli, J.J. Salas, P.A. Quant, and J.L. Harwood Use of metabolic control analysis to give quantitative information on control of lipid biosynthesis in the important oil crop, Elaeis guineensis (oilpalm) New. Phytol 184 2009 330 339
6. C. Marchive, K. Nikovics, A. To, L. Lepiniec, and S. Baud Transcriptional regulation of fatty acid production in higher plants: molecular bases and biotechnological outcomes Eur. J. Lipid Sci. Technol 116 2014 1332 1343
7. J.B. Ohlrogge, and J.G. Jaworski Regulation of fatty acid synthesis Annu. Rev. Physiol. Plant Mol. Biol 48 1997 109 136
8. N. Bryant, J. Lloyd, C. Sweeney, F. Myouga, and D. Meinke Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis Plant Physiol 155 2011 1678 1689
9. Z. Mou, Y. He, Y. Dai, X. Liu, and J. Li Deficiency in fatty acid synthase leads to premature cell death and dramatic alterations in plant morphology Plant Cell 12 2000 405 417
10. M. Lin, R. Behal, and D.J. Oliver Disruption of plE2, the gene for the E2 subunit of the plastid pyruvate dehydrogenase complex, in Arabidopsis causes an early embryo lethal phenotype Plant Mol. Biol 52 2003 865 872
11. X. Li, H. Ilarslan, L. Brachova, H.-R. Qian, L. Li, P. Che, E.S. Wurtele, and B.J. Nikolau Reverse-genetic analysis of the two biotin-containing subunit genes of the heteromeric acetyl-coenzyme A carboxylase in Arabidopsis indicates a unidirectional functional redundancy Plant Physiol 155 2011 293 314
12. M.S. Pidkowich, H.T. Nguyen, I. Heilmann, T. Ischebeck, and J. Shanklin Modulating seed ß-ketoacyl-acyl carrier protein synthase II level converts the composition of a temperate seed oil to that of a palm-like tropical oil Proc. Natl. Acad. Sci. U. S. A. 104 2007 4742 4747
13. G.-Z. Wu, and H.-W. Xue Arabidopsis ß-ketoacyl-[acyl carrier protein] synthase I is crucial for fatty acid synthesis and plays a role in chloroplast division and embryo development Plant Cell 22 2010 3726 3744
14. G. Bonaventure, and J.B. Ohlrogge Differential regulation of mRNA levels of acyl carrier protein isoforms in Arabidopsis Plant Physiol 128 2002 223 235
15. A. Kachroo, J. Shanklin, E. Whittle, L. Lapchyk, D. Hildebrand, and P. Kachroo The Arabidopsis stearoyl-acyl carrier protein-desaturase family and the contribution of leaf isoforms to oleic acid synthesis Plant Mol. Biol 63 2007 257 271
16. J.J. Salas, and J.B. Ohlrogge Characterization of substrate specificity of plant FatA and FatB acyl-ACP thioesterases Arch. Biochem. Biophys 402 2002 25 34
17. J.L. Bennetzen Arabidopsis arrives Nat. Genet 27 2001 3 5
18. C. Andre, J.E. Froehlich, M.R. Moll, and C. Benning A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis Plant Cell 19 2007 2006 2022
19. P.D.B. Olinares, L. Ponnala, and K.J. van Wijk Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clusturing Mol. Cell. Prot 9 2010 1594 1615
20. P.G. Roughan Stromal concentrations of coenzyme A and its esters are insufficient to account for rates of chloroplast fatty acid synthesis: evidence for substrate channelling within chloroplast fatty acid synthase Biochem. J. 327 1997 267 273
21. M. Ferro, S. Brugière, D. Salvi, D. Seigneurin-Berny, M. Court, L. Moyet, C. Ramus, S. Miras, M. Mellal, S. Le Gall, S. Kieffer-Jacquinod, C. Bruley, J. Garin, J. Joyard, C. Masselon, and N. Rolland AT-CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins Mol. Cell. Proteomics 9 2010 1063 1084
22. J. Joyard, M. Ferro, C. Masselon, D. Seigneurin-Berny, D. Salvi, J. Garin, and N. Rolland Chloroplast proteomics highlights the subcellular compartmentation of lipid metabolism Prog. Lipid Res 49 2010 128 158
23. J.-B. Peltier, Y. Cai, Q. Sun, V. Zabrouskov, L. Giacomelli, A. Rudella, A.J. Ytterberg, H. Rutschow, and K.J. van Wijk The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts Mol. Cell. Prot 5 2006 114 133
24. J.J. Thelen, and J.B. Ohlrogge The multisubunit acetyl-CoA carboxylase is strongly associated with the chloroplast envelope through non-ionic interactions to the carboxyltransferase subunits Arch. Biochem. Biophys 400 2002 245 257
25. P.G. Roughan, and J.B. Ohlrogge Evidence that isolated chloroplasts contain an integrated lipid-synthesizing assembly that channels acetate into long-chain fatty acids Plant Physiol 110 1996 1239 1247
26. N. Li, I.L. Gügel, P. Giavalisco, V. Zeisler, L. Schreiber, J. Soll, and K. Philippar FAX1, a novel membrane protein mediating plastid fatty acid export PLoS Biol 13 2015 e1002053
27. C. Andre, R.P. Haslam, and J. Shanklin Feedback regulation of plastidic acetyl-CoA carboxylase by 18:1-acyl carrier protein in Brassica napus Proc. Natl. Acad. Sci. U. S. A. 25 2012 10107 10112
28. A.B. Feria Bourrellier, B. Valot, A. Guillot, F. Ambard-Bretteville, J. Vidal, and M. Hodges Chloroplast acetyl-CoA carboxylase activity is 2-oxoglutarate regulated by interaction of PII with the biotin carboxyl carrier subunit Proc. Natl. Acad. Sci. U. S. A. 107 2010 502 507
29. Y. Sasaki, A. Kozaki, and M. Hatano Link between light and fatty acid synthesis: thioredoxin-linked reductive activation of plastidic acetyl-CoA carboxylase Proc. Natl. Acad. Sci. U. S. A. 94 1997 11096 11101
30. L.J. Savage, and J.B. Ohlrogge Phosphorylation of pea chloroplast acetyl-CoA carboxylase Plant J. 18 1999 521 527
31. J.A. Miernyk, and J.J. Thelen Biochemical approaches for discovering protein-protein interactions Plant J. 53 2008 597 609
32. F.M. Brück, M. Brummel, R. Schuch, and F. Spener In-vitro evidence for feed-back regulation of ß-ketoacyl-acyl carrier protein synthase III in medium-chain fatty acid biosynthesis Planta 198 1996 271 278
33. G.K. Agrawal, and J.J. Thelen Large scale identification and quantitative profiling of phosphoproteins expressed during seed filling in oilseed rape Mol. Cell. Proteomics 5 2006 2044 2059
34. D.M. Stark, K.P. Timmerman, G.F. Barry, J. Preiss, and G.M. Kishore Regulation of the amount of starch in plant tissues by ADP glucose pyrophosphorylase Science 258 1992 287 292
35. H.T. Nguyen, H. Park, K.L. Koster, R.E. Cahoon, H.T.M. Nguyen, J. Shanklin, T.E. Clemente, and E.B. Cahoon Redirection of metabolic flux for high levels of omega-7 monounsaturated fatty acid accumulation in camelina seeds Plant Biotechnol. J. 13 2015 38 50
36. P. Zheng, W.B. Allen, K. Roesler, M.E. Williams, S. Zhang, J. Li, K. Glassman, J. Ranch, D. Nubel, W. Solawetz, D. Bhattramakki, V. Llaca, S. Deschamps, G.-Y. Zhong, M.C. Tarczynski, and B. Shen A phenylalanine in DGAT is a key determinant of oil content and composition in maize Nat. Genet 40 2008 367 372
37. S. Baud, and L. Lepiniec Physiological and developmental regulation of seed oil production Prog. Lipid Res 49 2010 235 249
38. J. Schwender, F. Goffman, J.B. Ohlrogge, and Y. Shachar-Hill Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds Nature 432 2004 779 782