-
1
-
-
79953048649
-
Contour detection and hierarchical image segmentation
-
Arbeláez, P., Maire, M., Fowlkes, C., and Malik, J. (2011). Contour detection and hierarchical image segmentation. IEEE Trans. Patt. Anal. Mach. Intell. 33, 898-916. doi: 10.1109/TPAMI.2010.161
-
(2011)
IEEE Trans. Patt. Anal. Mach. Intell
, vol.33
, pp. 898-916
-
-
Arbeláez, P.1
Maire, M.2
Fowlkes, C.3
Malik, J.4
-
2
-
-
84863446250
-
Nanoscale analysis of structural synaptic plasticity
-
Bourne, J. N., and Harris, K. M. (2012). Nanoscale analysis of structural synaptic plasticity. Curr. Opin. Neurobiol. 22, 372-382. doi: 10.1016/j.conb.2011.10.019
-
(2012)
Curr. Opin. Neurobiol
, vol.22
, pp. 372-382
-
-
Bourne, J.N.1
Harris, K.M.2
-
3
-
-
79952380642
-
Wiring specificity in the direction-selectivity circuit of the retina
-
Briggman, K. L., Helmstaedter, M., and Denk, W. (2011). Wiring specificity in the direction-selectivity circuit of the retina. Nature 471, 183-188. doi: 10.1038/nature09818
-
(2011)
Nature
, vol.471
, pp. 183-188
-
-
Briggman, K.L.1
Helmstaedter, M.2
Denk, W.3
-
4
-
-
79956160020
-
Community- based innovation contests: Where competition meets cooperation
-
Bullinger, A. C., Neyer, A.-K., Rass, M., and Moeslein, K. M. (2010). Community- based innovation contests: Where competition meets cooperation. Creat. Innov. Manage. 19, 290-303. doi: 10.1111/j.1467-8691.2010.00565.x
-
(2010)
Creat. Innov. Manage
, vol.19
, pp. 290-303
-
-
Bullinger, A.C.1
Neyer, A.-K.2
Rass, M.3
Moeslein, K.M.4
-
5
-
-
84872569594
-
System-wide rewiring underlies behavioral differences in predatory and bacterial- feeding nematodes
-
Bumbarger, D. J., Riebesell, M., Rödelsperger, C., and Sommer, R. J. (2013). System-wide rewiring underlies behavioral differences in predatory and bacterial- feeding nematodes. Cell 152, 109-119. doi: 10.1016/j.cell.2012.12.013
-
(2013)
Cell
, vol.152
, pp. 109-119
-
-
Bumbarger, D.J.1
Riebesell, M.2
Rödelsperger, C.3
Sommer, R.J.4
-
6
-
-
78149370793
-
An integrated micro-and macroarchitectural analysis of the drosophila brain by computer-assisted serial section electron microscopy
-
Cardona, A., Saalfeld, S., Preibisch, S., Schmid, B., Cheng, A., Pulokas, et al. (2010). An integrated micro-and macroarchitectural analysis of the drosophila brain by computer-assisted serial section electron microscopy. PLoS Biol. 8:e1000502. doi: 10.1371/journal.pbio.1000502
-
(2010)
Plos Biol
, vol.8
-
-
Cardona, A.1
Saalfeld, S.2
Preibisch, S.3
Schmid, B.4
Cheng, A.5
-
7
-
-
84862556352
-
Trakem2 software for neural circuit reconstruction
-
Cardona, A., Saalfeld, S., Schindelin, J., Arganda-Carreras, I., Preibisch, S., Longair, M., et al. (2012). Trakem2 software for neural circuit reconstruction. PLoS ONE 7:e38011. doi: 10.1371/journal.pone.0038011
-
(2012)
Plos ONE
, vol.7
-
-
Cardona, A.1
Saalfeld, S.2
Schindelin, J.3
Arganda-Carreras, I.4
Preibisch, S.5
Longair, M.6
-
8
-
-
84895512107
-
Objective comparison of particle tracking methods
-
Chenouard, N., Smal, I., de Chaumont, F., Maška, M., Sbalzarini, I. F., Gong, Y., et al. (2014). Objective comparison of particle tracking methods. Nat. Methods 11, 281-289. doi: 10.1038/nmeth.2808
-
(2014)
Nat. Methods
, vol.11
, pp. 281-289
-
-
Chenouard, N.1
Smal, I.2
De Chaumont, F.3
Maška, M.4
Sbalzarini, I.F.5
Gong, Y.6
-
9
-
-
77957017889
-
Semi-automated reconstruction of neural circuits using electron microscopy
-
Chklovskii, D., Vitaladevuni, S., and Scheffer, L. (2010). Semi-automated reconstruction of neural circuits using electron microscopy. Curr. Opin. Neurobiol. 20, 667-675. doi: 10.1016/j.conb.2010.08.002
-
(2010)
Curr. Opin. Neurobiol
, vol.20
, pp. 667-675
-
-
Chklovskii, D.1
Vitaladevuni, S.2
Scheffer, L.3
-
10
-
-
84877789057
-
(2012). "Deep neural networks segment neuronal membranes in electron microscopy images,"
-
Lake Tahoe, NV
-
Ciresan, D. C., Giusti, A., Gambardella, L. M., and Schmidhuber, J. (2012). "Deep neural networks segment neuronal membranes in electron microscopy images," in Annual Conference on Neural Information Processing Systems (NIPS) (Lake Tahoe, NV), 2852-2860.
-
Annual Conference on Neural Information Processing Systems (NIPS)
, pp. 2852-2860
-
-
Ciresan, D.C.1
Giusti, A.2
Gambardella, L.M.3
Schmidhuber, J.4
-
11
-
-
84866713677
-
Efficient automatic 3D-reconstruction of branching neurons from EM data
-
Funke, J., Andres, B., Hamprecht, F., Cardona, A., and Cook, M. (2012). Efficient automatic 3D-reconstruction of branching neurons from EM data. Comput. Vis. Patt. Recogn. 1004-1011. doi: 10.1109/cvpr.2012.6247777
-
(2012)
Comput. Vis. Patt. Recogn
, pp. 1004-1011
-
-
Funke, J.1
Res, B.2
Hamprecht, F.3
Cardona, A.4
Cook, M.5
-
12
-
-
84881453258
-
Connectomic reconstruction of the inner plexiform layer in the mouse retina
-
Helmstaedter, M., Briggman, K. L., Turaga, S. C., Jain, V., Seung, H. S., and Denk, W. (2013). Connectomic reconstruction of the inner plexiform layer in the mouse retina. Nature 500, 168-174. doi: 10.1038/nature12346
-
(2013)
Nature
, vol.500
, pp. 168-174
-
-
Helmstaedter, M.1
Briggman, K.L.2
Turaga, S.C.3
Jain, V.4
Seung, H.S.5
Denk, L.6
-
13
-
-
77955985601
-
Boundary learning by optimization with topological constraints
-
San Francisco, CA: IEEE Computer Society
-
Jain, V., Bollmann, B., Richardson, M., Berger, D. R., Helmstaedter, M. N., Briggman, K. L., et al. (2010a). "Boundary learning by optimization with topological constraints," in 2010 IEEE Conference On Computer Vision and Pattern Recognition (CVPR) (San Francisco, CA: IEEE Computer Society), 2488-2495.
-
(2010)
2010 IEEE Conference on Computer Vision and Pattern Recognition (CVPR)
, pp. 2488-2495
-
-
Jain, V.1
Bollmann, B.2
Richardson, M.3
Berger, D.R.4
Helmstaedter, M.N.5
Briggman, K.L.6
-
14
-
-
50649114600
-
Supervised learning of image restoration with convolutional networks
-
Jain, V., Murray, J., Roth, F., Turaga, S., Zhigulin, V., Briggman, K., et al. (2007). "Supervised learning of image restoration with convolutional networks," in IEEE 11th International Conference on Computer Vision, ICCV (Rio de Janeiro), 1-8.
-
(2007)
IEEE 11Th International Conference on Computer Vision, ICCV (Rio De Janeiro)
, pp. 1-8
-
-
Jain, V.1
Murray, J.2
Roth, F.3
Turaga, S.4
Zhigulin, V.5
Briggman, K.6
-
15
-
-
77957021569
-
Machines that learn to segment images: A crucial technology for connectomics
-
Jain, V., Seung, H. S., and Turaga, S. C. (2010b). Machines that learn to segment images: a crucial technology for connectomics. Curr. Opin. Neurobiol. 20, 653-666. doi: 10.1016/j.conb.2010.07.004
-
(2010)
Curr. Opin. Neurobiol
, vol.20
, pp. 653-666
-
-
Jain, V.1
Seung, H.S.2
Turaga, S.C.3
-
16
-
-
84864352338
-
The connectome of a decision-making neural network
-
Jarrell, T. A., Wang, Y., Bloniarz, A. E., Brittin, C. A., Xu, M., Thomson, J. N., et al. (2012). The connectome of a decision-making neural network. Science 337, 437-444. doi: 10.1126/science.1221762
-
(2012)
Science
, vol.337
, pp. 437-444
-
-
Jarrell, T.A.1
Wang, Y.2
Bloniarz, A.E.3
Brittin, C.A.4
Xu, M.5
Thomson, J.N.6
-
17
-
-
84938233335
-
Saturated reconstruction of a volume of neocortex
-
Kasthuri, N., Hayworth, K. J., Berger, D. R., Schalek, R. L., Conchello, J. A., Knowles-Barley, S., et al. (2015). Saturated reconstruction of a volume of neocortex. Cell 162, 648-661. doi: 10.1016/j.cell.2015.06.054
-
(2015)
Cell
, vol.162
, pp. 648-661
-
-
Kasthuri, N.1
Hayworth, K.J.2
Berger, D.R.3
Schalek, R.L.4
Conchello, J.A.5
Knowles-Barley, S.6
-
18
-
-
84924939729
-
Large-scale automatic reconstruction of neuronal processes from electron microscopy images
-
Kaynig, V., Vazquez-Reina, A., Knowles-Barley, S., Roberts, M., Jones, T. R., Kasthuri, N., et al. (2015). Large-scale automatic reconstruction of neuronal processes from electron microscopy images. Med. Image Anal. 22, 77-88. doi: 10.1016/j.media.2015.02.001
-
(2015)
Med. Image Anal
, vol.22
, pp. 77-88
-
-
Kaynig, V.1
Vazquez-Reina, A.2
Knowles-Barley, S.3
Roberts, M.4
Jones, T.R.5
Kasthuri, N.6
-
19
-
-
84900523778
-
Space-time wiring specificity supports direction selectivity in the retina
-
Kim, J. S., Greene, M. J., Zlateski, A., Lee, K., Richardson, M., Turaga, S. C., et al. (2014). Space-time wiring specificity supports direction selectivity in the retina. Nature 509, 331-336. doi: 10.1038/nature13240
-
(2014)
Nature
, vol.509
, pp. 331-336
-
-
Kim, J.S.1
Greene, M.J.2
Zlateski, A.3
Lee, K.4
Richardson, M.5
Turaga, S.C.6
-
20
-
-
84876231242
-
Imagenet classification with deep convolutional neural networks
-
Krizhevsky, A., Sutskever, I., and Hinton, G. E. (2013). Imagenet classification with deep convolutional neural networks. Adv. Neural Inf. Process. Syst. 25, 1097-1105.
-
(2013)
Adv. Neural Inf. Process. Syst
, vol.25
, pp. 1097-1105
-
-
Krizhevsky, A.1
Sutskever, I.2
Hinton, G.E.3
-
21
-
-
84885924112
-
Learning to segment neurons with non-local quality measures
-
Kroeger, T., Mikula, S., Denk, W., Koethe, U., and Hamprecht, F. A. (2013). Learning to segment neurons with non-local quality measures. Med. Image Comput. Comput. Assist. Interv. 16 (Pt 2), 419-427. doi: 10.1007/978-3-642- 40763-5_52
-
(2013)
Med. Image Comput. Comput. Assist. Interv
, vol.16
, pp. 419-427
-
-
Kroeger, T.1
Mikula, S.2
Denk, W.3
Koethe, U.4
Hamprecht, F.A.5
-
22
-
-
84873598227
-
Prize-based contests can provide solutions to computational biology problems
-
Lakhani, K. R., Boudreau, K. J., Loh, P.-R., Backstrom, L., Baldwin, C., Lonstein, E., et al. (2013). Prize-based contests can provide solutions to computational biology problems. Nat. Biotechnol. 31, 108-111. doi: 10.1038/ nbt.2495
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 108-111
-
-
Lakhani, L.1
Boudreau, K.J.2
Loh, P.-R.3
Backstrom, L.4
Baldwin, C.5
Lonstein, E.6
-
23
-
-
0000359337
-
Backpropagation applied to handwritten zip code recognition
-
LeCun, Y., Boser, B., Denker, J. S., Henderson, D., Howard, R. E., Hubbard, W., et al. (1989). Backpropagation applied to handwritten zip code recognition. Neural Comput. 1, 541-551.
-
(1989)
Neural Comput
, vol.1
, pp. 541-551
-
-
Lecun, Y.1
Boser, B.2
Denker, J.S.3
Henderson, D.4
Howard, R.E.5
Hubbard, W.6
-
24
-
-
5044231640
-
Learning methods for generic object recognition with invariance to pose and lighting
-
Washington, DC: IEEE Computer Society
-
LeCun, Y., Huang, F. J., and Bottou, L. (2004). "Learning methods for generic object recognition with invariance to pose and lighting," in IEEE Conference on Computer Vision and Pattern Recognition, CVPR (Washington, DC: IEEE Computer Society), 97-104.
-
(2004)
IEEE Conference on Computer Vision and Pattern Recognition, CVPR
, pp. 97-104
-
-
Lecun, Y.1
Huang, F.J.2
Bottou, L.3
-
25
-
-
3042525106
-
Learning to detect natural image boundaries using local brightness, color, and texture cues
-
Martin, D., Fowlkes, C., and Malik, J. (2004). Learning to detect natural image boundaries using local brightness, color, and texture cues. IEEE Trans. Patt. Anal. Mach. Intell. 26, 530-549. doi: 10.1109/TPAMI.2004.1273918
-
(2004)
IEEE Trans. Patt. Anal. Mach. Intell
, vol.26
, pp. 530-549
-
-
Martin, D.1
Fowlkes, C.2
Malik, J.3
-
27
-
-
77956990482
-
Ultrastructural analysis of hippocampal neuropil from the connectomics perspective
-
Mishchenko, Y., Hu, T., Spacek, J., Mendenhall, J., Harris, K. M., and Chklovskii, D. B. (2010). Ultrastructural analysis of hippocampal neuropil from the connectomics perspective. Neuron 67, 1009-1020. doi: 10.1016/j.neuron.2010.08.014
-
(2010)
Neuron
, vol.67
, pp. 1009-1020
-
-
Mishchenko, Y.1
Hu, T.2
Spacek, J.3
Mendenhall, J.4
Harris, K.M.5
Chklovskii, D.B.6
-
28
-
-
84882631243
-
Machine learning of hierarchical clustering to segment 2D and 3D images
-
Nunez-Iglesias, J., Kennedy, R., Parag, T., Shi, J., and Chklovskii, D. B. (2013). Machine learning of hierarchical clustering to segment 2D and 3D images. PLoS ONE 8:e71715. doi: 10.1371/journal.pone.0071715
-
(2013)
Plos ONE
, vol.8
-
-
Nunez-Iglesias, J.1
Kennedy, R.2
Parag, T.3
Shi, J.4
Chklovskii, D.B.5
-
29
-
-
84950632109
-
Objective criteria for the evaluation of clustering methods
-
Rand, W. M. (1971). Objective criteria for the evaluation of clustering methods. J. Am. Stat. Assoc. 66, 846-850.
-
(1971)
J. Am. Stat. Assoc
, vol.66
, pp. 846-850
-
-
Rand, W.M.1
-
30
-
-
84945944033
-
Imagenet large scale visual recognition challenge
-
Russakovsky, O., Deng, J., Su, H., Krause, J., Satheesh, S., Ma, S., et al. (2014). Imagenet large scale visual recognition challenge. Int. J. Comput. Vis. 1-42.
-
(2014)
Int. J. Comput. Vis
, pp. 1-42
-
-
Russakovsky, O.1
Deng, J.2
Su, H.3
Krause, J.4
Satheesh, S.5
Ma, S.6
-
31
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T, et al. (2012). Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676-682. doi: 10.1038/nmeth.2019
-
(2012)
Nat. Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
Frise, E.3
Kaynig, V.4
Longair, M.5
Pietzsch, T.6
-
32
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C., Pulokas, J., Fellmann, D., Cheng, A., Guerra, F., Quispe, J., et al. (2005). Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60. doi: 10.1016/j.jsb.2005.03.010
-
(2005)
J. Struct. Biol
, vol.151
, pp. 41-60
-
-
Suloway, C.1
Pulokas, J.2
Fellmann, D.3
Cheng, A.4
Guerra, F.5
Quispe, J.6
-
33
-
-
84881412920
-
A visual motion detection circuit suggested by Drosophila connectomics
-
Takemura, S.-Y., Bharioke, A., Lu, Z., Nern, A., Vitaladevuni, S., Rivlin, P. K., et al. (2013). A visual motion detection circuit suggested by Drosophila connectomics. Nature 500, 175-181. doi: 10.1038/nature12450
-
(2013)
Nature
, vol.500
, pp. 175-181
-
-
Takemura, S.-Y.1
Bharioke, A.2
Lu, Z.3
Nern, A.4
Vitaladevuni, S.5
Rivlin, P.K.6
-
34
-
-
84861925555
-
Pervasive synaptic branch removal in the mammalian neuromuscular system at birth
-
Tapia, J. C., Wylie, J. D., Kasthuri, N., Hayworth, K. J., Schalek, R., Berger, D. R., et al. (2012). Pervasive synaptic branch removal in the mammalian neuromuscular system at birth. Neuron 74, 816-829. doi: 10.1016/j.neuron.2012.04.017
-
(2012)
Neuron
, vol.74
, pp. 816-829
-
-
Tapia, J.C.1
Wylie, J.D.2
Kasthuri, N.3
Hayworth, K.J.4
Schalek, R.5
Berger, D.R.6
-
35
-
-
80053541110
-
Maximin affinity learning of image segmentation
-
Turaga, S., Briggman, K., Helmstaedter, M., Denk, W., and Seung, H. S. (2009). Maximin affinity learning of image segmentation. Adv. Neural Info. Proc. Syst. 22, 1865-1873.
-
(2009)
Adv. Neural Info. Proc. Syst
, vol.22
, pp. 1865-1873
-
-
Turaga, S.1
Briggman, K.2
Helmstaedter, M.3
Denk, W.4
Seung, H.S.5
-
36
-
-
34247646574
-
Toward objective evaluation of image segmentation algorithms
-
Unnikrishnan, R., Pantofaru, C., and Hebert, M. (2007). Toward objective evaluation of image segmentation algorithms. IEEE Trans. Patt. Anal. Mach. Intell. 29, 929-944. doi: 10.1109/TPAMI.2007.1046
-
(2007)
IEEE Trans. Patt. Anal. Mach. Intell
, vol.29
, pp. 929-944
-
-
Unnikrishnan, R.1
Pantofaru, C.2
Hebert, M.3
-
37
-
-
0002221492
-
The structure of the nervous system of the nematode Caenorhabditis elegans
-
White, J. G., Southgate, E., Thomson, J. N., and Brenner, S. (1986). The structure of the nervous system of the nematode Caenorhabditis elegans. Philos. Trans. R. Soc. Lond. B Biol. Sci. 314, 1-340.
-
(1986)
Philos. Trans. R. Soc. Lond. B Biol. Sci
, vol.314
, pp. 1-340
-
-
White, J.G.1
Southgate, E.2
Thomson, J.N.3
Brenner, S.4
|