-
1
-
-
31144436747
-
The human connectome: a structural description of the human brain
-
Sporns O., Tononi G., Kotter R. The human connectome: a structural description of the human brain. PLoS Comput Biol 2005, 1:e42.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Sporns, O.1
Tononi, G.2
Kotter, R.3
-
3
-
-
65149085920
-
3D structural imaging of the brain with photons and electrons
-
Helmstaedter M., Briggman K.L., Denk W. 3D structural imaging of the brain with photons and electrons. Curr Opin Neurobiol 2008, 18:633-641.
-
(2008)
Curr Opin Neurobiol
, vol.18
, pp. 633-641
-
-
Helmstaedter, M.1
Briggman, K.L.2
Denk, W.3
-
4
-
-
37549028828
-
Circuit reconstruction tools today
-
Smith S.J. Circuit reconstruction tools today. Curr Opin Neurobiol 2007, 17:601-608.
-
(2007)
Curr Opin Neurobiol
, vol.17
, pp. 601-608
-
-
Smith, S.J.1
-
5
-
-
14044262855
-
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
-
Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol 2004, 2:e329.
-
(2004)
PLoS Biol
, vol.2
-
-
Denk, W.1
Horstmann, H.2
-
6
-
-
33847159648
-
Monosynaptic restriction of transsynaptic tracing from single, genetically targeted neurons
-
Wickersham I.R., Lyon D.C., Barnard R.J., Mori T., Finke S., Conzelmann K.K., Young J.A., Callaway E.M. Monosynaptic restriction of transsynaptic tracing from single, genetically targeted neurons. Neuron 2007, 53:639-647.
-
(2007)
Neuron
, vol.53
, pp. 639-647
-
-
Wickersham, I.R.1
Lyon, D.C.2
Barnard, R.J.3
Mori, T.4
Finke, S.5
Conzelmann, K.K.6
Young, J.A.7
Callaway, E.M.8
-
7
-
-
35948992641
-
Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system
-
Livet J., Weissman T.A., Kang H., Draft R.W., Lu J., Bennis R.A., Sanes J.R., Lichtman J.W. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 2007, 450:56-62.
-
(2007)
Nature
, vol.450
, pp. 56-62
-
-
Livet, J.1
Weissman, T.A.2
Kang, H.3
Draft, R.W.4
Lu, J.5
Bennis, R.A.6
Sanes, J.R.7
Lichtman, J.W.8
-
8
-
-
0002221492
-
The structure of the nervous system of the nematode caenorhabditis elegans
-
White J.G., Southgate E., Thomson J.N., Brenner S. The structure of the nervous system of the nematode caenorhabditis elegans. Philos Trans R Soc Lond, Ser B, Biol Sci. 1986, 314:1-340.
-
(1986)
Philos Trans R Soc Lond, Ser B, Biol Sci.
, vol.314
, pp. 1-340
-
-
White, J.G.1
Southgate, E.2
Thomson, J.N.3
Brenner, S.4
-
9
-
-
77957016666
-
-
Stuctural properties of the C. elegans neuronal network, submitted
-
Varshney L, Chen B, Paniagua E, Hall D, Chklovskii D: Stuctural properties of the C. elegans neuronal network, submitted 2010.
-
(2010)
-
-
Varshney, L.1
Chen, B.2
Paniagua, E.3
Hall, D.4
Chklovskii, D.5
-
10
-
-
0022363403
-
Anatomical circuitry of lateral inhibition in the eye of the horseshoe crab, Limulus polyphemus
-
Fahrenbach W.H. Anatomical circuitry of lateral inhibition in the eye of the horseshoe crab, Limulus polyphemus. Proc R Soc Lond B Biol Sci 1985, 225:219-249.
-
(1985)
Proc R Soc Lond B Biol Sci
, vol.225
, pp. 219-249
-
-
Fahrenbach, W.H.1
-
11
-
-
0035783516
-
Synaptic organization in the fly's optic lamina: few cells, many synapses and divergent microcircuits
-
Meinertzhagen I.A., Sorra K.E. Synaptic organization in the fly's optic lamina: few cells, many synapses and divergent microcircuits. Prog Brain Res 2001, 131:53-69.
-
(2001)
Prog Brain Res
, vol.131
, pp. 53-69
-
-
Meinertzhagen, I.A.1
Sorra, K.E.2
-
12
-
-
0022005223
-
Computer reconstruction of all the neurons in the optic ganglion of Daphnia magna
-
Sims S.J., Macagno E.R. Computer reconstruction of all the neurons in the optic ganglion of Daphnia magna. J Comp Neurol 1985, 233:12-29.
-
(1985)
J Comp Neurol
, vol.233
, pp. 12-29
-
-
Sims, S.J.1
Macagno, E.R.2
-
13
-
-
0019130570
-
A systematic approach to reconstructing microcircuitry by electron microscopy of serial sections
-
Stevens J.K., Davis T.L., Friedman N., Sterling P. A systematic approach to reconstructing microcircuitry by electron microscopy of serial sections. Brain Res 1980, 2:265-293.
-
(1980)
Brain Res
, vol.2
, pp. 265-293
-
-
Stevens, J.K.1
Davis, T.L.2
Friedman, N.3
Sterling, P.4
-
15
-
-
0346157394
-
Preservation of immunoreactivity and fine structure of adult C. elegans tissues using high-pressure freezing
-
Rostaing P., Weimer R.M., Jorgensen E.M., Triller A., Bessereau J.L. Preservation of immunoreactivity and fine structure of adult C. elegans tissues using high-pressure freezing. J Histochem Cytochem 2004, 52:1-12.
-
(2004)
J Histochem Cytochem
, vol.52
, pp. 1-12
-
-
Rostaing, P.1
Weimer, R.M.2
Jorgensen, E.M.3
Triller, A.4
Bessereau, J.L.5
-
16
-
-
40649107390
-
The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications
-
Sosinsky G.E., Crum J., Jones Y.Z., Lanman J., Smarr B., Terada M., Martone M.E., Deerinck T.J., Johnson J.E., Ellisman M.H. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol 2008, 161:359-371.
-
(2008)
J Struct Biol
, vol.161
, pp. 359-371
-
-
Sosinsky, G.E.1
Crum, J.2
Jones, Y.Z.3
Lanman, J.4
Smarr, B.5
Terada, M.6
Martone, M.E.7
Deerinck, T.J.8
Johnson, J.E.9
Ellisman, M.H.10
-
17
-
-
33751347587
-
Uniform serial sectioning for transmission electron microscopy
-
Harris K.M., Perry E., Bourne J., Feinberg M., Ostroff L., Hurlburt J. Uniform serial sectioning for transmission electron microscopy. J Neurosci 2006, 26:12101-12103.
-
(2006)
J Neurosci
, vol.26
, pp. 12101-12103
-
-
Harris, K.M.1
Perry, E.2
Bourne, J.3
Feinberg, M.4
Ostroff, L.5
Hurlburt, J.6
-
18
-
-
41149120500
-
Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
-
Knott G., Marchman H., Wall D., Lich B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. J Neurosci 2008, 28:2959-2964.
-
(2008)
J Neurosci
, vol.28
, pp. 2959-2964
-
-
Knott, G.1
Marchman, H.2
Wall, D.3
Lich, B.4
-
19
-
-
33749050824
-
Toward neural circuit reconstruction with volume electron microscopy techniques
-
Briggman K.L., Denk W. Toward neural circuit reconstruction with volume electron microscopy techniques. Curr Opin Neurobiol 2006, 16.
-
(2006)
Curr Opin Neurobiol
, vol.16
-
-
Briggman, K.L.1
Denk, W.2
-
21
-
-
77956006436
-
Increasing depth resolution of electron microscopy of neural circuits using sparse tomographic reconstruction
-
Veeraraghavan A., Genkin A., Vitaladevuni S., Scheffer L., Xu S., Hess H., Fetter R., Cantoni M., Knott G., Chklovskii D. Increasing depth resolution of electron microscopy of neural circuits using sparse tomographic reconstruction. CVPR 2010.
-
(2010)
CVPR
-
-
Veeraraghavan, A.1
Genkin, A.2
Vitaladevuni, S.3
Scheffer, L.4
Xu, S.5
Hess, H.6
Fetter, R.7
Cantoni, M.8
Knott, G.9
Chklovskii, D.10
-
22
-
-
77957016983
-
-
Super-resolution Reconstruction of Brain Structure Using Sparse Representation over Learned Dictionary, submitted for publication.
-
Hu T, et al.: Super-resolution Reconstruction of Brain Structure Using Sparse Representation over Learned Dictionary, submitted for publication.
-
-
-
Hu, T.1
-
23
-
-
0037022126
-
The Drosophila standard brain
-
Rein K., Zockler M., Mader M.T., Grubel C., Heisenberg M. The Drosophila standard brain. Curr Biol 2002, 12:227-231.
-
(2002)
Curr Biol
, vol.12
, pp. 227-231
-
-
Rein, K.1
Zockler, M.2
Mader, M.T.3
Grubel, C.4
Heisenberg, M.5
-
24
-
-
77649302828
-
Convolutional networks can learn to generate affinity graphs for image segmentation
-
Turaga S.C., Murray J.F., Jain V., Roth F., Helmstaedter M., Briggman K., Denk W., Seung H.S. Convolutional networks can learn to generate affinity graphs for image segmentation. Neural Comput 2010, 22:511-538.
-
(2010)
Neural Comput
, vol.22
, pp. 511-538
-
-
Turaga, S.C.1
Murray, J.F.2
Jain, V.3
Roth, F.4
Helmstaedter, M.5
Briggman, K.6
Denk, W.7
Seung, H.S.8
-
26
-
-
50649114600
-
Supervised learning of image restoration with convolutional networks
-
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S. Supervised learning of image restoration with convolutional networks. ICCV 2007.
-
(2007)
ICCV
-
-
Jain, V.1
Murray, J.F.2
Roth, F.3
Turaga, S.4
Zhigulin, V.5
Briggman, K.L.6
Helmstaedter, M.N.7
Denk, W.8
Seung, H.S.9
-
27
-
-
54249156699
-
Segmentation of SBFSEM volume data of neural tissue by hierarchical classification
-
Springer, Munich, Germany, G. Rigoll (Ed.)
-
Andres B., Kothe U., Helmstaedter M., Denk W., Hamprecht F. Segmentation of SBFSEM volume data of neural tissue by hierarchical classification. Pattern Recognition. 30th DAGM Symposium 2008, 142-152. Springer, Munich, Germany. G. Rigoll (Ed.).
-
(2008)
Pattern Recognition. 30th DAGM Symposium
, pp. 142-152
-
-
Andres, B.1
Kothe, U.2
Helmstaedter, M.3
Denk, W.4
Hamprecht, F.5
-
28
-
-
77957021100
-
Convolutional networks can learn to generate affinity graphs for image segmentation
-
Turaga S.C., Murray J.F., Jain V., Roth F., Helmstaedter M., Briggman K., Denk W., Seung H.S. Convolutional networks can learn to generate affinity graphs for image segmentation. Neural Comput 2009.
-
(2009)
Neural Comput
-
-
Turaga, S.C.1
Murray, J.F.2
Jain, V.3
Roth, F.4
Helmstaedter, M.5
Briggman, K.6
Denk, W.7
Seung, H.S.8
-
29
-
-
77957018797
-
-
Ultrastructural analysis of hippocampal neuropil from the connectomics perspective. Neuron, in press.
-
Mishchenko Y, Hu T, Spacek J, Mendenhall J, Harris K, Chklovskii D: Ultrastructural analysis of hippocampal neuropil from the connectomics perspective. Neuron, in press.
-
-
-
Mishchenko, Y.1
Hu, T.2
Spacek, J.3
Mendenhall, J.4
Harris, K.5
Chklovskii, D.6
-
30
-
-
57749197806
-
Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs
-
Mishchenko Y. Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs. J Neurosci Methods 2009, 176:276-289.
-
(2009)
J Neurosci Methods
, vol.176
, pp. 276-289
-
-
Mishchenko, Y.1
-
31
-
-
84866679959
-
Geometrical consistent 3D tracing of neuronal processes in ssTEM data
-
Kaynig V., Fuchs T., Buhmann J.M. Geometrical consistent 3D tracing of neuronal processes in ssTEM data. MICCAI 2010.
-
(2010)
MICCAI
-
-
Kaynig, V.1
Fuchs, T.2
Buhmann, J.M.3
-
32
-
-
51049096764
-
An optimal-path approach for neural circuit reconstruction
-
Jurrus E., Whitaker R., Jones B.W., Marc R., Tasdizen T. An optimal-path approach for neural circuit reconstruction. Proc IEEE Int Symp Biomed Imaging 2008, 2008:1609-1612.
-
(2008)
Proc IEEE Int Symp Biomed Imaging
, vol.2008
, pp. 1609-1612
-
-
Jurrus, E.1
Whitaker, R.2
Jones, B.W.3
Marc, R.4
Tasdizen, T.5
-
33
-
-
0018401970
-
Three-dimensional computer reconstruction of neurons and neuronal assemblies
-
Macagno E.R., Levinthal C., Sobel I. Three-dimensional computer reconstruction of neurons and neuronal assemblies. Annu Rev Biophys Bioeng 1979, 8:323-351.
-
(1979)
Annu Rev Biophys Bioeng
, vol.8
, pp. 323-351
-
-
Macagno, E.R.1
Levinthal, C.2
Sobel, I.3
-
34
-
-
17144363197
-
Reconstruct: a free editor for serial section microscopy
-
Fiala J.C. Reconstruct: a free editor for serial section microscopy. J Microsc 2005, 218:52-61.
-
(2005)
J Microsc
, vol.218
, pp. 52-61
-
-
Fiala, J.C.1
-
35
-
-
77957018822
-
-
ImageJ on World Wide Web URL.
-
ImageJ on World Wide Web URL: http://rsb.info.nih.gov/ij.
-
-
-
-
36
-
-
0029879295
-
Computer visualization of three-dimensional image data using IMOD
-
Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J Struct Biol 1996, 116:71-76.
-
(1996)
J Struct Biol
, vol.116
, pp. 71-76
-
-
Kremer, J.R.1
Mastronarde, D.N.2
McIntosh, J.R.3
-
37
-
-
0025483799
-
Neuron imaging with neurolucida-a PC-based system for image combining microscopy
-
Glaser J.R., Glaser E.M. Neuron imaging with neurolucida-a PC-based system for image combining microscopy. Comput Med Imaging Graphics 1990, 14:307-317.
-
(1990)
Comput Med Imaging Graphics
, vol.14
, pp. 307-317
-
-
Glaser, J.R.1
Glaser, E.M.2
-
39
-
-
77953689289
-
Fully automatic stitching and distortion correction of transmission electron microscope images
-
Kaynig V., Fischer B., Muller E., Buhmann J.M. Fully automatic stitching and distortion correction of transmission electron microscope images. J Struct Biol 2010, 171:163-173.
-
(2010)
J Struct Biol
, vol.171
, pp. 163-173
-
-
Kaynig, V.1
Fischer, B.2
Muller, E.3
Buhmann, J.M.4
-
40
-
-
77957019007
-
-
Tomancak P: An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. PLoS Biol, in press.
-
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P: An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. PLoS Biol, in press.
-
-
-
Cardona, A.1
Saalfeld, S.2
Preibisch, S.3
Schmid, B.4
Cheng, A.5
Pulokas, J.6
-
41
-
-
65949084476
-
A computational framework for ultrastructural mapping of neural circuitry
-
Anderson J.R., Jones B.W., Yang J.H., Shaw M.V., Watt C.B., Koshevoy P., Spaltenstein J., Jurrus E., Kannan U.V., Whitaker R.T., et al. A computational framework for ultrastructural mapping of neural circuitry. PLoS Biol 2009, 7:e1000074.
-
(2009)
PLoS Biol
, vol.7
-
-
Anderson, J.R.1
Jones, B.W.2
Yang, J.H.3
Shaw, M.V.4
Watt, C.B.5
Koshevoy, P.6
Spaltenstein, J.7
Jurrus, E.8
Kannan, U.V.9
Whitaker, R.T.10
-
42
-
-
77954204710
-
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets
-
Saalfeld S., Cardona A., Hartenstein V., Tomancak P. As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinformatics 2010, 26:i57-i63.
-
(2010)
Bioinformatics
, vol.26
-
-
Saalfeld, S.1
Cardona, A.2
Hartenstein, V.3
Tomancak, P.4
-
43
-
-
51949096537
-
-
Buhmann J: Probabilistic Image Registration and Anomaly Detection by Nonlinear Warping
-
Kaynig V, Fischer B, Buhmann J: Probabilistic Image Registration and Anomaly Detection by Nonlinear Warping, 2008.
-
(2008)
-
-
Kaynig, V.1
Fischer, B.2
-
44
-
-
20544468931
-
Automated molecular microscopy: the new Leginon system
-
Suloway C., Pulokas J., Fellmann D., Cheng A., Guerra F., Quispe J., Stagg S., Potter C.S., Carragher B. Automated molecular microscopy: the new Leginon system. J Struct Biol 2005, 151:41-60.
-
(2005)
J Struct Biol
, vol.151
, pp. 41-60
-
-
Suloway, C.1
Pulokas, J.2
Fellmann, D.3
Cheng, A.4
Guerra, F.5
Quispe, J.6
Stagg, S.7
Potter, C.S.8
Carragher, B.9
-
45
-
-
0033284915
-
Object recognition from local scale-invariant features
-
Lowe D. Object recognition from local scale-invariant features. ICCV 1999.
-
(1999)
ICCV
-
-
Lowe, D.1
-
47
-
-
77957016204
-
-
Chklovskii DB: Raveler-a software for editing large segmented electron microscopy datasets, in preparation.
-
Olbris DJ, Winston P, Chklovskii DB: Raveler-a software for editing large segmented electron microscopy datasets, in preparation.
-
-
-
Olbris, D.J.1
Winston, P.2
-
48
-
-
3042525106
-
Learning to detect natural image boundaries using local brightness, color, and texture cues
-
Martin D.R., Fowlkes C.C., Malik J. Learning to detect natural image boundaries using local brightness, color, and texture cues. IEEE Trans Pattern Anal Mach Intell 2004, 26:530-549.
-
(2004)
IEEE Trans Pattern Anal Mach Intell
, vol.26
, pp. 530-549
-
-
Martin, D.R.1
Fowlkes, C.C.2
Malik, J.3
-
49
-
-
0028444940
-
Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue-sections
-
Carlbom I., Terzopoulos D., Harris K.M. Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue-sections. IEEE Trans Med Imaging 1994, 13:351-362.
-
(1994)
IEEE Trans Med Imaging
, vol.13
, pp. 351-362
-
-
Carlbom, I.1
Terzopoulos, D.2
Harris, K.M.3
-
50
-
-
70350630741
-
Scalable and interactive segmentation and visualization of neural processes in EM datasets
-
Jeong W.K., Beyer J., Hadwiger M., Vazquez A., Pfister H., Whitaker R.T. Scalable and interactive segmentation and visualization of neural processes in EM datasets. IEEE Trans Visual Comput Graphics 2009, 15:1505-1514.
-
(2009)
IEEE Trans Visual Comput Graphics
, vol.15
, pp. 1505-1514
-
-
Jeong, W.K.1
Beyer, J.2
Hadwiger, M.3
Vazquez, A.4
Pfister, H.5
Whitaker, R.T.6
-
51
-
-
70450202689
-
Multiphase geometric couplings for the segmentation of neural processes
-
Reina A., Miller E., Pfister H. Multiphase geometric couplings for the segmentation of neural processes. CVPR 2009.
-
(2009)
CVPR
-
-
Reina, A.1
Miller, E.2
Pfister, H.3
-
52
-
-
77957017318
-
-
Reconstruction software: Program Elegance on World Wide Web URL: .
-
Reconstruction software: Program Elegance on World Wide Web URL: http://worms.aecom.yu.edu/pages/Reconstruction%20Software.html.
-
-
-
-
54
-
-
77957019404
-
-
High-accuracy neurite tracing for high-throughput neuroanatomy, in preparation.
-
Helmstaedter M, Briggman KL, Denk W: High-accuracy neurite tracing for high-throughput neuroanatomy, in preparation.
-
-
-
Helmstaedter, M.1
Briggman, K.L.2
Denk, W.3
-
55
-
-
0022808786
-
A computational approach to edge-detection
-
Canny J. A computational approach to edge-detection. IEEE Trans Pattern Anal Mach Intell 1986, 8:679-698.
-
(1986)
IEEE Trans Pattern Anal Mach Intell
, vol.8
, pp. 679-698
-
-
Canny, J.1
-
56
-
-
0037252843
-
Statistical edge detection: learning and evaluating edge cues
-
Konishi S., Yuille A.L., Coughlan J.M., Zhu S.C. Statistical edge detection: learning and evaluating edge cues. IEEE Trans Pattern Anal Mach Intell 2003, 25:57-74.
-
(2003)
IEEE Trans Pattern Anal Mach Intell
, vol.25
, pp. 57-74
-
-
Konishi, S.1
Yuille, A.L.2
Coughlan, J.M.3
Zhu, S.C.4
-
57
-
-
77957018941
-
-
Supervised learning of edges and object boundaries
-
Dollar P, Tu Z, Belongie S: Supervised learning of edges and object boundaries, 2006.
-
(2006)
-
-
Dollar, P.1
Tu, Z.2
Belongie, S.3
-
58
-
-
0032203257
-
Gradient-based learning applied to document recognition
-
Lecun Y., Bottou L., Bengio Y., Haffner P. Gradient-based learning applied to document recognition. Proc IEEE 1998, 86:2278-2324.
-
(1998)
Proc IEEE
, vol.86
, pp. 2278-2324
-
-
Lecun, Y.1
Bottou, L.2
Bengio, Y.3
Haffner, P.4
-
61
-
-
77954660421
-
Detection of neuron membranes in electron microscopy images using a serial neural network architecture
-
Jurrus E., Paiva A.R., Watanabe S., Anderson J.R., Jones B.W., Whitaker R.T., Jorgensen E.M., Marc R.E., Tasdizen T. Detection of neuron membranes in electron microscopy images using a serial neural network architecture. Med Image Anal 2010, 14:770-783.
-
(2010)
Med Image Anal
, vol.14
, pp. 770-783
-
-
Jurrus, E.1
Paiva, A.R.2
Watanabe, S.3
Anderson, J.R.4
Jones, B.W.5
Whitaker, R.T.6
Jorgensen, E.M.7
Marc, R.E.8
Tasdizen, T.9
-
62
-
-
77955991044
-
Neuron geometry extraction by perceptual grouping in ssTEM images
-
Kaynig V., Fuchs T., Buhmann J. Neuron geometry extraction by perceptual grouping in ssTEM images. CVPR 2010.
-
(2010)
CVPR
-
-
Kaynig, V.1
Fuchs, T.2
Buhmann, J.3
-
63
-
-
77957017510
-
-
On World Wide Web URL.
-
On World Wide Web URL: http://ilastik.org/.
-
-
-
-
64
-
-
77957020648
-
-
Trainable Segmentation Plugin (Fiji) on World Wide Web URL: .
-
Trainable Segmentation Plugin (Fiji) on World Wide Web URL: http://pacific.mpi-cbg.de/wiki/index.php/Trainable_Segmentation_Plugin.
-
-
-
-
66
-
-
34247335352
-
Classification-driven watershed segmentation
-
Levner I., Zhang H. Classification-driven watershed segmentation. IEEE Trans Image Process 2007, 16:1437-1445.
-
(2007)
IEEE Trans Image Process
, vol.16
, pp. 1437-1445
-
-
Levner, I.1
Zhang, H.2
-
68
-
-
0026172104
-
Watersheds in digital spaces-an efficient algorithm based on immersion simulations
-
Vincent L., Soille P. Watersheds in digital spaces-an efficient algorithm based on immersion simulations. IEEE Trans Pattern Anal Mach Intell 1991, 13:583-598.
-
(1991)
IEEE Trans Pattern Anal Mach Intell
, vol.13
, pp. 583-598
-
-
Vincent, L.1
Soille, P.2
-
69
-
-
0345414167
-
Learning a classification model for segmentation
-
Ren X., Malik J. Learning a classification model for segmentation. ICCV 2003.
-
(2003)
ICCV
-
-
Ren, X.1
Malik, J.2
-
70
-
-
0035167945
-
-
Hierarchical image segmentation using contour dynamics. ICIP
-
Haris K, Efstratiadis SN, Maglaveras N: Hierarchical image segmentation using contour dynamics. ICIP, 2001.
-
(2001)
-
-
Haris, K.1
Efstratiadis, S.N.2
Maglaveras, N.3
-
71
-
-
0032297229
-
Hybrid image segmentation using watersheds and fast region merging
-
Haris K., Efstratiadis S.N., Maglaveras N., Katsaggelos A.K. Hybrid image segmentation using watersheds and fast region merging. IEEE Trans Image Process 1998, 7:1684-1699.
-
(1998)
IEEE Trans Image Process
, vol.7
, pp. 1684-1699
-
-
Haris, K.1
Efstratiadis, S.N.2
Maglaveras, N.3
Katsaggelos, A.K.4
-
72
-
-
0030383412
-
Geodesic saliency of watershed contours and hierarchical segmentation
-
Najman L., Schmitt M. Geodesic saliency of watershed contours and hierarchical segmentation. IEEE Trans Pattern Anal Mach Intell 1996, 18:1163-1173.
-
(1996)
IEEE Trans Pattern Anal Mach Intell
, vol.18
, pp. 1163-1173
-
-
Najman, L.1
Schmitt, M.2
-
74
-
-
84950632109
-
Objective criteria for the evaluation of clustering methods
-
Rand W. Objective criteria for the evaluation of clustering methods. J Am Stat Assoc 1971, 66:846-850.
-
(1971)
J Am Stat Assoc
, vol.66
, pp. 846-850
-
-
Rand, W.1
-
75
-
-
77955985601
-
Boundary learning by optimization with topological constraints
-
Jain V., Bollmann B., Richardson M., Berger D., Helmstaedter M., Briggman K., Denk W., Bowden J., Mendenhall J., Abraham W., et al. Boundary learning by optimization with topological constraints. CVPR 2010.
-
(2010)
CVPR
-
-
Jain, V.1
Bollmann, B.2
Richardson, M.3
Berger, D.4
Helmstaedter, M.5
Briggman, K.6
Denk, W.7
Bowden, J.8
Mendenhall, J.9
Abraham, W.10
-
76
-
-
36849078178
-
Contour-propagation algorithms for semi-automated reconstruction of neural processes
-
Macke J.H., Maack N., Gupta R., Denk W., Scholkopf B., Borst A. Contour-propagation algorithms for semi-automated reconstruction of neural processes. J Neurosci Methods 2008, 167:349-357.
-
(2008)
J Neurosci Methods
, vol.167
, pp. 349-357
-
-
Macke, J.H.1
Maack, N.2
Gupta, R.3
Denk, W.4
Scholkopf, B.5
Borst, A.6
-
77
-
-
57049129820
-
Axon tracking in serial block-face scanning electron microscopy
-
Jurrus E., Hardy M., Tasdizen T., Fletcher P.T., Koshevoy P., Chien C.B., Denk W., Whitaker R. Axon tracking in serial block-face scanning electron microscopy. Med Image Anal 2009, 13:180-188.
-
(2009)
Med Image Anal
, vol.13
, pp. 180-188
-
-
Jurrus, E.1
Hardy, M.2
Tasdizen, T.3
Fletcher, P.T.4
Koshevoy, P.5
Chien, C.B.6
Denk, W.7
Whitaker, R.8
-
78
-
-
77955992085
-
Co-clustering of image segments using convex optimization applied to EM neuronal reconstruction
-
Vitaladevuni S., Basri R. Co-clustering of image segments using convex optimization applied to EM neuronal reconstruction. CVPR 2010.
-
(2010)
CVPR
-
-
Vitaladevuni, S.1
Basri, R.2
-
79
-
-
12844262766
-
" GrabCut" -interactive foreground extraction using iterated graph cuts
-
Rother C., Kolmogorov V., Blake A. " GrabCut" -interactive foreground extraction using iterated graph cuts. ACM Trans Graphics 2004, 23:309-314.
-
(2004)
ACM Trans Graphics
, vol.23
, pp. 309-314
-
-
Rother, C.1
Kolmogorov, V.2
Blake, A.3
-
80
-
-
69949157383
-
Graph cut segmentation of neuronal structures from transmission electron micrographs
-
Vu N., Manjunath B. Graph cut segmentation of neuronal structures from transmission electron micrographs. ICIP 2008.
-
(2008)
ICIP
-
-
Vu, N.1
Manjunath, B.2
-
82
-
-
0025978387
-
Synaptic organization of columnar elements in the lamina of the wild type in Drosophila melanogaster
-
Meinertzhagen I.A., O'Neil S.D. Synaptic organization of columnar elements in the lamina of the wild type in Drosophila melanogaster. J Comp Neurol 1991, 305:232-263.
-
(1991)
J Comp Neurol
, vol.305
, pp. 232-263
-
-
Meinertzhagen, I.A.1
O'Neil, S.D.2
-
84
-
-
47749087494
-
Tools for neuroanatomy and neurogenetics in Drosophila
-
Pfeiffer B.D., Jenett A., Hammonds A.S., Ngo T.T., Misra S., Murphy C., Scully A., Carlson J.W., Wan K.H., Laverty T.R., et al. Tools for neuroanatomy and neurogenetics in Drosophila. Proc Natl Acad Sci USA 2008, 105:9715-9720.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9715-9720
-
-
Pfeiffer, B.D.1
Jenett, A.2
Hammonds, A.S.3
Ngo, T.T.4
Misra, S.5
Murphy, C.6
Scully, A.7
Carlson, J.W.8
Wan, K.H.9
Laverty, T.R.10
-
85
-
-
0024307370
-
The optic lobe of Drosophila melanogaster. 1. A Golgi analysis of wild-type structure
-
Fischbach K.F., Dittrich A.P.M. The optic lobe of Drosophila melanogaster. 1. A Golgi analysis of wild-type structure. Cell Tissue Res 1989, 258:441-475.
-
(1989)
Cell Tissue Res
, vol.258
, pp. 441-475
-
-
Fischbach, K.F.1
Dittrich, A.P.M.2
-
86
-
-
67651151102
-
From form to function: the ways to know a neuron
-
Meinertzhagen I.A., Takemura S.Y., Lu Z., Huang S., Gao S., Ting C.Y., Lee C.H. From form to function: the ways to know a neuron. J Neurogenet 2009, 23:68-77.
-
(2009)
J Neurogenet
, vol.23
, pp. 68-77
-
-
Meinertzhagen, I.A.1
Takemura, S.Y.2
Lu, Z.3
Huang, S.4
Gao, S.5
Ting, C.Y.6
Lee, C.H.7
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