-
5
-
-
0034598746
-
Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling
-
February
-
Ash A. Alizadeh, Michael B. Eisen, R. Eric Davis, Chi Ma, Izidore S. Lossos, Adreas RosenWald, Jennifer C. Boldrick, Hajeer Sabet, Truc Tran, Xin Yu, John I. Powell, Liming Yang, Gerald E. Marti et al. Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature, Vol.403:503-511, February 2000.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
RosenWald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
-
6
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
August
-
Charles M. Perou, Stefanie S. Jeffrey, Matt Van De Rijn, Christia A. Rees, Michael B. Eisen, Douglas T. Ross, Alexander Pergamenschikov, Cheryl F. Williams, Shirley X. Zhu, Jeffrey C. F. Lee, Deval Lashkari, Dari Shalon, Patrick O. Brown, and David Bostein. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natl. Acad. Sci. USA, Vol. 96(16):9212-9217, August 1999.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, Issue.16
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.F.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Bostein, D.14
-
8
-
-
0029812283
-
A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
-
D. Shalon, S.J. Smith, P.O. Brown. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Research, 6:639-645, 1996.
-
(1996)
Genome Research
, vol.6
, pp. 639-645
-
-
Shalon, D.1
Smith, S.J.2
Brown, P.O.3
-
9
-
-
0033726346
-
Class Prediction and Discovery Using Gene Expression Data
-
ACM Press
-
Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, and Eric S. Lander. Class Prediction and Discovery Using Gene Expression Data. In RECOMB 2000: Proceedings of the Fifth Annual International Conference on Computational Biology. ACM Press, 2000.
-
(2000)
RECOMB 2000: Proceedings of the Fifth Annual International Conference on Computational Biology
-
-
Slonim, D.K.1
Tamayo, P.2
Mesirov, J.P.3
Golub, T.R.4
Lander, E.S.5
-
10
-
-
0033747889
-
Generation of patterns form gene expression data by assigning confidence to differentially expressed genes
-
Elisabetta Manduchi, Gregory R. Grant, Steven E. McKenzie, G. Christian Overton, Saul Surrey and Christian J. Stoeckert Jr. Generation of patterns form gene expression data by assigning confidence to differentially expressed genes. Bioinformatics, Vol. 16(8):685-698, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.8
, pp. 685-698
-
-
Manduchi, E.1
Grant, G.R.2
McKenzie, S.E.3
Overton, G.C.4
Surrey, S.5
Stoeckert, C.J.6
-
12
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
October
-
Gad Getz, Erel Levine and Eytan Domany. Coupled two-way clustering analysis of gene microarray data. Proc. Natl. Acad. Sci. USA, Vol. 97(22):12079-12084, October 2000.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, Issue.22
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
13
-
-
0031616361
-
Cluster Analysis and data visualization of large-scale expression data
-
G.S. Michaels, D.B. Carr, M. Askenazi, S. Fuhrman, X. Wen and R. Somogyi. Cluster Analysis and data visualization of large-scale expression data. In Pac Symposium of Biocomputing, volume 3, pages 42-53, 1998.
-
(1998)
Pac Symposium of Biocomputing
, vol.3
, pp. 42-53
-
-
Michaels, G.S.1
Carr, D.B.2
Askenazi, M.3
Fuhrman, S.4
Wen, X.5
Somogyi, R.6
-
15
-
-
0029852580
-
Use of a cDNA microarray to analyse gene expression patterns in human cancer
-
J. DeRisi, L. Penland, P.O. Brown, M.L. Bittner, P.S. Meltzer, M. Ray, Y. Chen, Y.A. Su, J.M. Trent. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genetics, 14:457-460, 1996.
-
(1996)
Nature Genetics
, vol.14
, pp. 457-460
-
-
DeRisi, J.1
Penland, L.2
Brown, P.O.3
Bittner, M.L.4
Meltzer, P.S.5
Ray, M.6
Chen, Y.7
Su, Y.A.8
Trent, J.M.9
-
16
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Javier Herrero, Alfonso Valencia, and Joaquin Dopazo. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17:126-136, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
17
-
-
0032143452
-
Profiling expression patterns and isolating differentially expressed genes by cDNA microarray system with colorimetry detection
-
J.J. Chen, R. Wu, P.C. Yang, J.Y. Huang, Y.P. Sher, M.H. Han, W.C. Kao, P.J. Lee, T.F. Chiu, F. Chang, Y.W. Chu, C.W. Wu, K. Peck. Profiling expression patterns and isolating differentially expressed genes by cDNA microarray system with colorimetry detection. Genomics, 51:313-324, 1998.
-
(1998)
Genomics
, vol.51
, pp. 313-324
-
-
Chen, J.J.1
Wu, R.2
Yang, P.C.3
Huang, J.Y.4
Sher, Y.P.5
Han, M.H.6
Kao, W.C.7
Lee, P.J.8
Chiu, T.F.9
Chang, F.10
Chu, Y.W.11
Wu, C.W.12
Peck, K.13
-
18
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
J.L. DeRisi, V.R. Iyer and P.O. Brown. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, pages 680-686, 1997.
-
(1997)
Science
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
19
-
-
0034656561
-
Normalization strategies for cDNA microarrays
-
Johannes Schuchhardt, Dieter Beule, Arif Malik, Eryc Wolski, Holger Eickhoff, Hans Lehrach and Hanspeter Herzel. Normalization strategies for cDNA microarrays. Nucleic Acids Research, Vol. 28(10), 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.10
-
-
Schuchhardt, J.1
Beule, D.2
Malik, A.3
Wolski, E.4
Eickhoff, H.5
Lehrach, H.6
Herzel, H.7
-
21
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
M. Schena, D. Shalon, R.W. Davis, P.O. Brown. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270:467-470, 1995.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
22
-
-
0029748326
-
Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
-
October
-
Mark Schena, Dari Shalon, Renu Heller, Andrew Chai, Patrick O. Brown, and Ronald W. Davis. Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. USA, Vol. 93(20):10614-10619, October 1996.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, Issue.20
, pp. 10614-10619
-
-
Schena, M.1
Shalon, D.2
Heller, R.3
Chai, A.4
Brown, P.O.5
Davis, R.W.6
-
23
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Michael B. Eisen, Paul T. Spellman, Patrick O. Brown and David Botstein. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, Vol. 95:14863-14868, 1998.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
24
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data using support vector machines
-
January
-
Michael P. S. Brown, William Noble Grundy, David Lin, Nello Cristianini, Charles Sugnet, Terrence S. Furey, Manuel Ares and Jr.David Haussler. Knowledge-based analysis of microarray gene expression data using support vector machines. Proc. Natl. Acad. Sci., 97(1):262-267, January 2000.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, Issue.1
, pp. 262-267
-
-
Brown, M.P.S.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.5
Furey, T.S.6
Ares, M.7
Haussler, D.8
-
25
-
-
17344372326
-
Data management and analysis for gene expression arrays
-
O. Ermolaeva, M. Rastogi, K.D. Pruitt, G.D. Schuler, M.L. Bittner, Y. Chen, R. Simon, P. Meltzer, J.M. Trent, M.S. Boguski. Data management and analysis for gene expression arrays. Nature Genetics, 20:19-23, 1998.
-
(1998)
Nature Genetics
, vol.20
, pp. 19-23
-
-
Ermolaeva, O.1
Rastogi, M.2
Pruitt, K.D.3
Schuler, G.D.4
Bittner, M.L.5
Chen, Y.6
Simon, R.7
Meltzer, P.8
Trent, J.M.9
Boguski, M.S.10
-
26
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Auguest
-
Orly Alter, Patrick O. Brown and David Bostein. Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl. Acad. Sci. USA, Vol. 97(18):10101-10106, Auguest 2000.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, Issue.18
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Bostein, D.3
-
27
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
March
-
Pablo Tamayo, Donna Solni,m Jill Mesirov, Qing Zhu, Sutisak Kitareewan, Ethan Dmitrovsky, Eric S. Lander and Todd R. Golub. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. USA, Vol. 96(6):2907-2912, March 1999.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, Issue.6
, pp. 2907-2912
-
-
Tamayo, P.1
Solnim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
28
-
-
0030992159
-
Discovery and analysis of inflammatory disease-related genes using cDNA microarrays
-
R.A. Heller, M. Schena, A. Chai, D. Shalon, T. Bedilion, J. Gilmore, D.E. Woolley, R.W. Davis. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc. Natl. Acad. Sci. USA, 94:2150-2155, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2150-2155
-
-
Heller, R.A.1
Schena, M.2
Chai, A.3
Shalon, D.4
Bedilion, T.5
Gilmore, J.6
Woolley, D.E.7
Davis, R.W.8
-
29
-
-
0033028596
-
Systematic determination of genetic network architecture
-
S. Tavazoie, D. Hughes, M.J. Campbell, R.J. Cho and G.M. Church. Systematic determination of genetic network architecture. Nature Genet, pages 281-285, 1999.
-
(1999)
Nature Genet
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
30
-
-
0013329850
-
A maximum entropy approach to classifying gene array data sets
-
Shumei Jiang, Chun Tang, Li Zhang and Aidong Zhang, Murali Ramanathan. A maximum entropy approach to classifying gene array data sets. In Proc. of Workshop on Data mining for genomics, First SIAM International Conference on Data Mining, 2001.
-
(2001)
Proc. of Workshop on Data Mining for Genomics, First SIAM International Conference on Data Mining
-
-
Jiang, S.1
Tang, C.2
Zhang, L.3
Zhang, A.4
Ramanathan, M.5
-
31
-
-
0032526318
-
Detection of differentially expressed genes in primary tumor tissues using representational differences analysis coupled to microarray hybridization
-
S.M. Welford, J. Gregg, E. Chen, D. Garrison, P.H. Sorensen, C.T. Denny, S.F. Nelson. Detection of differentially expressed genes in primary tumor tissues using representational differences analysis coupled to microarray hybridization. Nucleic Acids Research, 26:3059-3065, 1998.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 3059-3065
-
-
Welford, S.M.1
Gregg, J.2
Chen, E.3
Garrison, D.4
Sorensen, P.H.5
Denny, C.T.6
Nelson, S.F.7
-
32
-
-
0031742022
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
Spellman P.T., Sherlock G., Zhang M.Q., Iyer V.R., Anders K., Eisen M.B., Brown P.O., Botstein D., Futcher B. . Exploring the metabolic and genetic control of gene expression on a genomic scale. Mol. Biol. Cell, page 3273, 1998.
-
(1998)
Mol. Biol. Cell
, pp. 3273
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
33
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
October
-
T.R. Golub, D.K. Slonim, P. Tamayo, C. Huard, M. Gassenbeek, J.P. Mesirov, H. Coller, M.L. Loh, J.R. Downing, M.A. Caligiuri, D.D. Bloomfield and E.S. Lander. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science, Vol. 286(15):531-537, October 1999.
-
(1999)
Science
, vol.286
, Issue.15
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gassenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, D.D.11
Lander, E.S.12
-
34
-
-
0035226961
-
Supervised harvesting of expression trees
-
January
-
Trevor Hastie, Robert Tibshirani, David Boststein and Patrick Brown. Supervised harvesting of expression trees. Genome Biology, Vol. 2(1):0003.1-0003.12, January 2001.
-
(2001)
Genome Biology
, vol.2
, Issue.1
, pp. 0003.1-0003.12
-
-
Hastie, T.1
Tibshirani, R.2
Boststein, D.3
Brown, P.4
-
35
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array
-
June
-
U. Alon, N. Barkai, D.A. Notterman, K.Gish, S. Ybarra, D. Mack and A.J. Levine. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array. Proc. Natl. Acad. Sci. USA, Vol. 96(12):6745-6750, June 1999.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, Issue.12
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
36
-
-
0008376732
-
Interferon beta in the treatment of multiple sclerosis: Mechanisms of action
-
V. Yong, S. Chabot, Q. Stuve and G. Williams. Interferon beta in the treatment of multiple sclerosis: mechanisms of action. Neurology, 51:682-689, 1998.
-
(1998)
Neurology
, vol.51
, pp. 682-689
-
-
Yong, V.1
Chabot, S.2
Stuve, Q.3
Williams, G.4
-
37
-
-
0032903908
-
The transcriptional program in the response of human fibroblasts to serum
-
V.R. Iyer, M.B. Eisen, D.T. Ross, G. Schuler, T. Moore, J.C.F. Lee, J.M. Trent, L.M. Staudt, Jr. J. Hudson, M.S. Boguski, D. Lashkari, D. Shalon, D. Botstein, P.O. Brown. The transcriptional program in the response of human fibroblasts to serum. Science, 283:83-87, 1999.
-
(1999)
Science
, vol.283
, pp. 83-87
-
-
Iyer, V.R.1
Eisen, M.B.2
Ross, D.T.3
Schuler, G.4
Moore, T.5
Lee, J.C.F.6
Trent, J.M.7
Staudt, L.M.8
Hudson, J.9
Boguski, M.S.10
Lashkari, D.11
Shalon, D.12
Botstein, D.13
Brown, P.O.14
-
38
-
-
0034819914
-
Context-specific bayesian clustering for gene expression data
-
Y Barash and N Friedman. Context-specific bayesian clustering for gene expression data. Bioinformatics, RECOM01, 2001.
-
(2001)
Bioinformatics, RECOM01
-
-
Barash, Y.1
Friedman, N.2
-
39
-
-
0034869983
-
Normalization for cDNA Microarray Data
-
San Jose, California, January
-
Yang Y.H., Dudoit S., Luu P. and Speed T. P. Normalization for cDNA Microarray Data. In Proceedings of SPIE BiOS 2001, San Jose, California, January 2001.
-
(2001)
Proceedings of SPIE BiOS 2001
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Speed, T.P.4
|