The murine lung microbiome changes during lung inflammation and intranasal vancomycin treatment

Open Microbiology Journal

Volumn 9, Issue , 2015, Pages 167-179

  Barfod, Kenneth Klingenberg ^a   Vrankx, Katleen ^b   Mirsepasi Lauridsen, Hengameh Chloé ^c   Hansen, Jitka Stilund ^a   Hougaard, Karin Sørig ^a   Larsen, Søren Thor ^a   Ouwenhand, Arthur C ^d   Krogfelt, Karen Angeliki ^c  

^a NATIONAL RESEARCH CENTRE FOR THE WORKING ENVIRONMENT   (Denmark)

^b Applied Maths NV   (Belgium)

^c STATENS SERUM INSTITUT   (Denmark)

^d DUPONT COMPANY   (United States)

Author keywords

Antibiotic; Broncho alveolar lavage; Carbon nanotubes; Denaturing gradient gel electrophoresis; Probiotic

Indexed keywords

BACTERIAL DNA; CARBON NANOTUBE; PROBIOTIC AGENT; VANCOMYCIN;

ADULT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BIFIDOBACTERIUM ANIMALIS; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA EXTRACTION; FECES ANALYSIS; FEMALE; GENDER; INTESTINE BIOPSY; LACTOBACILLUS ACIDOPHILUS; LUNG LAVAGE; MALE; MICROBIOME; NASAL LAVAGE; NONHUMAN; PNEUMONIA; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 84948425567     PISSN: None     EISSN: 18742858     Source Type: Journal    
DOI: 10.2174/1874285801509010167     Document Type: Article

References (57)

1. [1] Helander HF, Fandriks L. Surface area of the digestive tract-revisited. Scand J Gastroenterol 2014; 49(6): 681-9.
2. [2] Hasleton PS. The internal surface area of the adult human lung. J Anat 1972; 112(Pt 3): 391-400.
3. [3] Hilty M, Burke C, Pedro H, et al. Disordered microbial communities in asthmatic airways. PLoS One 2010; 5(1): e8578.
4. [4] Huang YJ, Nelson CE, Brodie EL, et al. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol 2010; 127(2): 372-81.
5. [5] Morris A, Beck JM, Schloss PD, et al. Comparison of the Respiratory Microbiome in Healthy Non-Smokers and Smokers. Am J Respir Crit Care Med 2013; 187(10): 1067-75.
6. [6] Huang YJ. Asthma microbiome studies and the potential for new therapeutic strategies. Curr Allergy Asthma Rep 2013; 13(5): 453-61.
7. [7] Huang YJ, Charlson ES, Collman RG, Colombini-Hatch S, Martinez FD, Senior RM. The Role of the Lung Microbiome in Health and Disease: A National Heart, Lung and Blood Institute Workshop Report. Am J Respir Crit Care Med 2013; 187(12): 1382-7.
8. [8] Dickson RP, Erb-Downward JR, Huffnagle GB. The role of the bacterial microbiome in lung disease. Expert Rev Respir Med 2013; 7(3): 245-57.
9. [9] Marsland BJ, Gollwitzer ES. Host-microorganism interactions in lung diseases. Nat Rev Immunol 2014; 14(12): 827-35.
10. [10] Barfod KK, Roggenbuck M, Hansen LH, et al. The murine lung microbiome in relation to the intestinal and vaginal bacterial communities. BMC Microbiol 2013; 13: 303.
11. [11] Licht TR, Hansen M, Poulsen M, Dragsted LO. Dietary carbohydrate source influences molecular fingerprints of the rat faecal microbiota. BMC Microbiol 2006; 6: 98.
12. [12] Smith B, Li N, Andersen AS, Slotved HC, Krogfelt KA. Optimising bacterial DNA extraction from faecal samples: comparison of three methods. Open Microbiol J 2011; 5: 14-7.
13. [13] Wacklin P, Makivuokko H, Alakulppi N, et al. Secretor genotype (FUT2 gene) is strongly associated with the composition of Bifidobacteria in the human intestine. PLoS One 2011; 6(5): e20113.
14. [14] McLeish AC, Zvolensky MJ. Asthma and cigarette smoking: a review of the empirical literature. J Asthma 2010; 47(4): 345-61.
15. [15] Alberg T, Hansen JS, Lovik M, Nygaard UC. Particles influence allergic responses in mice--role of gender and particle size. J Toxicol Environ Health A 2014; 77(5): 281-92.
16. [16] Ronzani C, Casset A, Pons F. Exposure to multi-walled carbon nanotubes results in aggravation of airway inflammation and remodeling and in increased production of epithelium-derived innate cytokines in a mouse model of asthma. Arch Toxicol 2014; 88(2): 489-99.
17. [17] Forsythe P. Probiotics and lung diseases. Chest 2011; 139(4): 901-8.
18. [18] Ouwehand AC, Nermes M, Collado MC, Rautonen N, Salminen S, Isolauri E. Specific probiotics alleviate allergic rhinitis during the birch pollen season. World J Gastroenterol 2009; 15(26): 3261-8.
19. [19] Ly NP, Litonjua A, Gold DR, Celedon JC. Gut microbiota, probiotics, and vitamin D: interrelated exposures influencing allergy, asthma, and obesity? J Allergy Clin Immunol 2011; 127(5): 1087-94.
20. [20] Rauch M, Lynch SV. Probiotic manipulation of the gastrointestinal microbiota. Gut Microbes 2010; 1(5): 335-8.
21. [21] Grzeskowiak L, Gronlund MM, Beckmann C, Salminen S, von BA, Isolauri E. The impact of perinatal probiotic intervention on gut microbiota: double-blind placebo-controlled trials in Finland and Germany. Anaerobe 2012; 18(1): 7-13.
22. [22] Gueimonde M, Sakata S, Kalliomaki M, Isolauri E, Benno Y, Salminen S. Effect of maternal consumption of lactobacillus GG on transfer and establishment of fecal bifidobacterial microbiota in neonates. J Pediatr Gastroenterol Nutr 2006; 42(2): 166-70.
23. [23] Schultz M, Gottl C, Young RJ, Iwen P, Vanderhoof JA. Administration of oral probiotic bacteria to pregnant women causes temporary infantile colonization. J Pediatr Gastroenterol Nutr 2004; 38(3): 293-7.
24. [24] Christensen HR, Frokiaer H, Pestka JJ. Lactobacilli differentially modulate expression of cytokines and maturation surface markers in murine dendritic cells. J Immunol 2002; 168(1): 171-8.
25. [25] Feleszko W, Jaworska J, Rha RD, et al. Probiotic-induced suppression of allergic sensitization and airway inflammation is associated with an increase of T regulatory-dependent mechanisms in a murine model of asthma. Clin Exp Allergy 2007; 37(4): 498-505.
26. [26] Forsythe P, Inman MD, Bienenstock J. Oral treatment with live Lactobacillus reuteri inhibits the allergic airway response in mice. Am J Respir Crit Care Med 2007; 175(6): 561-9.
27. [27] Azad MB, Kozyrskyj AL. Perinatal programming of asthma: the role of gut microbiota. Clin Dev Immunol 2012; 2012: 932072.
28. [28] Noverr MC, Huffnagle GB. The 'microflora hypothesis' of allergic diseases. Clin Exp Allergy 2005; 35(12): 1511-20.
29. [29] Kuo CH, Kuo HF, Huang CH, Yang SN, Lee MS, Hung CH. Early life exposure to antibiotics and the risk of childhood allergic diseases: an update from the perspective of the hygiene hypothesis. J Microbiol Immunol Infect 2013; 46(5): 320-9.
30. [30] Russell SL, Gold MJ, Hartmann M, et al. Early life antibioticdriven changes in microbiota enhance susceptibility to allergic asthma. EMBO Rep 2012; 13(5): 440-7.
31. [31] Hansen CH, Krych L, Nielsen DS, et al. Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse. Diabetologia 2012; 55(8): 2285-94.
32. [32] Noverr MC, Falkowski NR, McDonald RA, McKenzie AN, Huffnagle GB. Development of allergic airway disease in mice following antibiotic therapy and fungal microbiota increase: role of host genetics, antigen, and interleukin-13. Infect Immun 2005; 73(1): 30-8.
33. [33] Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun 2009; 77(6): 2367-75.
34. [34] Russell SL, Gold MJ, Willing BP, Thorson L, McNagny KM, Finlay BB. Perinatal antibiotic treatment affects murine microbiota, immune responses and allergic asthma. Gut Microbes 2013; 4(2): 158-64.
35. [35] Armstrong CJ, Wilson TS. Systemic absorption of vancomycin. J Clin Pathol 1995; 48(7): 689.
36. [36] Kilkenny C, Browne WJ, Cuthill IC, Emerson M, Altman DG. Improving bioscience research reporting: the ARRIVE guidelines for reporting animal research. PLoS Biol 2010; 8(6): e1000412.
37. [37] Hougaard KS, Jackson P, Kyjovska ZO, et al. Effects of lung exposure to carbon nanotubes on female fertility and pregnancy. A study in mice. Reprod Toxicol 2013; 41: 86-97.
38. [38] Hansen JS, Nielsen GD, Sorli JB, Clausen PA, Wolkoff P, Larsen ST. Adjuvant and inflammatory effects in mice after subchronic inhalation of allergen and ozone-initiated limonene reaction products. J Toxicol Environ Health A 2013; 76(19): 1085-95.
39. [39] Weiss G, Rasmussen S, Nielsen FL, Jarmer H, Nohr NB, Frokiaer H. Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells. PLoS One 2010; 5(6): e11065.
40. [40] Gobel RJ, Larsen N, Jakobsen M, Molgaard C, Michaelsen KF. Probiotics to adolescents with obesity: effects on inflammation and metabolic syndrome. J Pediatr Gastroenterol Nutr 2012; 55(6): 673-8.
41. [41] Larsen N, Vogensen FK, Gobel R, et al. Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07. FEMS Microbiol Ecol 2011; 75(3): 482-96.
42. [42] Muyzer G, de Waal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993; 59(3): 695-700.
43. [43] Robert R. Sokal, F.James Rohlf. The comparison of dendrograms by objective methods. TAXON 1962; 11(2): 33-40.
44. [44] Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988; 26(11): 2465-6.
45. [45] Pielou EC. The measurement of diversity in different types of biological collections. J Theor Biol 1966; 13: 131-44.
46. [46] Susannah Salter, Michael JC, Elena MT, et al. Reagent contamination can critically impact sequence-based microbiome analyses. BMC Biol 2014; 12: 87.
47. [47] Venkataraman A, Bassis CM, Beck JM, et al. Application of a neutral community model to assess structuring of the human lung microbiome. MBio 2015; 6(1): e02284-14.
48. [48] Bangsgaard Bendtsen KM, Krych L, Sorensen DB, et al. Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse. PLoS One 2012; 7(10): e46231.
49. [49] Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK. Family relationship of female breeders reduce the systematic interindividual variation in the gut microbiota of inbred laboratory mice. Lab Anim 2010; 44(4): 283-9.
50. [50] Hansen CH, Andersen LS, Krych L, et al. Mode of delivery shapes gut colonization pattern and modulates regulatory immunity in mice. J Immunol 2014; 193(3): 1213-22.
51. [51] Yurkovetskiy L, Burrows M, Khan AA, et al. Gender bias in autoimmunity is influenced by microbiota. Immunity 2013; 39(2): 400-12.
52. [52] Bolnick DI, Snowberg LK, Hirsch PE, et al. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat Commun 2014; 5: 4500.
53. [53] Genuneit J. Sex-specific development of asthma differs between farm and nonfarm children: A Cohort Study. Am J Respir Crit Care Med 2014; 190(5): 588-90.
54. [54] Russell SL, Finlay BB. The impact of gut microbes in allergic diseases. Curr Opin Gastroenterol 2012; 28(6): 563-9.
55. [55] Conrad ML, Ferstl R, Teich R, et al. Maternal TLR signaling is required for prenatal asthma protection by the nonpathogenic microbe Acinetobacter lwoffii F78. J Exp Med 2009; 206(13): 2869-77.
56. [56] Brand S, Teich R, Dicke T, et al. Epigenetic regulation in murine offspring as a novel mechanism for transmaternal asthma protection induced by microbes. J Allergy Clin Immunol 2011; 128(3): 618-25.
57. [57] Yun Y, Srinivas G, Kuenzel S, et al. Environmentally determined differences in the murine lung microbiota and their relation to alveolar architecture. PLoS One 2014; 9(12): e113466.