-
1
-
-
73149087453
-
Transcription profile of thermus thermophilus CRISPR systems after phage infection
-
Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A (2010) Transcription profile of thermus thermophilus CRISPR systems after phage infection. J Mol Biol 395:270-281
-
(2010)
J Mol Biol
, vol.395
, pp. 270-281
-
-
Agari, Y.1
Sakamoto, K.2
Tamakoshi, M.3
Oshima, T.4
Kuramitsu, S.5
Shinkai, A.6
-
2
-
-
79955435335
-
Clustered regularly interspaced short palindromic repeats (CRISPRs): The hallmark of an ingenious antiviral defense mechanism in prokaryotes
-
Al-Attar S, Westra ER, van der Oost J, Brouns SJ (2011) Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol Chem 392:277-289
-
(2011)
Biol Chem
, vol.392
, pp. 277-289
-
-
Al-Attar, S.1
Westra, E.R.2
Van Der Oost, J.3
Brouns, S.J.4
-
3
-
-
80052549313
-
The 5.5 protein of phage T7 inhibits H-NS through interactions with the central oligomerization domain
-
Ali SS, Beckett E, Bae SJ, Navarre WW (2011) The 5.5 protein of phage T7 inhibits H-NS through interactions with the central oligomerization domain. J Bacteriol 193:4881-4892
-
(2011)
J Bacteriol
, vol.193
, pp. 4881-4892
-
-
Ali, S.S.1
Beckett, E.2
Bae, S.J.3
Navarre, W.W.4
-
4
-
-
81755177792
-
Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis
-
Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, Croucher NJ, Rose G, Perkins TT, Parkhill J, Dougan G, Young DB (2011) Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. PLoS Pathog 7:e1002342
-
(2011)
Plos Pathog
, vol.7
-
-
Arnvig, K.B.1
Comas, I.2
Thomson, N.R.3
Houghton, J.4
Boshoff, H.I.5
Croucher, N.J.6
Rose, G.7
Perkins, T.T.8
Parkhill, J.9
Dougan, G.10
Young, D.B.11
-
5
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF (2011) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol Microbiol 79:484-502
-
(2011)
Mol Microbiol
, vol.79
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
Binkowski, A.10
Phanse, S.11
Joachimiak, A.12
Koonin, E.V.13
Savchenko, A.14
Emili, A.15
Greenblatt, J.16
Edwards, A.M.17
Yakunin, A.F.18
-
6
-
-
0036066806
-
The baeSR two-component regulatory system activates transcription of the yegMNOB (MdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate
-
Baranova N, Nikaido H (2002) The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate. J Bacteriol 184:4168-4176
-
(2002)
J Bacteriol
, vol.184
, pp. 4168-4176
-
-
Baranova, N.1
Nikaido, H.2
-
7
-
-
0023392855
-
Eukaryotic Mr 83,000 heat shock protein has a homologue in Escherichia coli
-
Bardwell JC, Craig EA (1987) Eukaryotic Mr 83,000 heat shock protein has a homologue in Escherichia coli. Proc Natl Acad Sci U S A 84:5177-5181
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 5177-5181
-
-
Bardwell, J.C.1
Craig, E.A.2
-
8
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
9
-
-
0023645010
-
Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene
-
Berkhout B, Schmidt BF, van Strien A, van Boom J, van Westrenen J, van Duin J (1987) Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene. J Mol Biol 195:517-524
-
(1987)
J Mol Biol
, vol.195
, pp. 517-524
-
-
Berkhout, B.1
Schmidt, B.F.2
Van Strien, A.3
Van Boom, J.4
Van Westrenen, J.5
Van Duin, J.6
-
10
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, Dickman MJ, Makarova KS, Koonin EV, van der Oost J (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321:960-964
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
11
-
-
79951505084
-
Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates
-
Cady KC, White AS, Hammond JH, Abendroth MD, Karthikeyan RS, Lalitha P, Zegans ME, O’Toole GA (2011) Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates. Microbiology 157:430-437
-
(2011)
Microbiology
, vol.157
, pp. 430-437
-
-
Cady, K.C.1
White, A.S.2
Hammond, J.H.3
Abendroth, M.D.4
Karthikeyan, R.S.5
Lalitha, P.6
Zegans, M.E.7
O’Toole, G.A.8
-
12
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte J, Wang R, Li H, Terns RM, Terns MP (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22:3489-3496
-
(2008)
Genes Dev
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
13
-
-
9644283008
-
Cooperative binding of the leucine-responsive regulatory protein (Lrp) to DNA
-
Chen S, Iannolo M, Calvo JM (2005) Cooperative binding of the leucine-responsive regulatory protein (Lrp) to DNA. J Mol Biol 345:251-264
-
(2005)
J Mol Biol
, vol.345
, pp. 251-264
-
-
Chen, S.1
Iannolo, M.2
Calvo, J.M.3
-
14
-
-
22644441730
-
The phage-shock-protein response
-
Darwin AJ (2005) The phage-shock-protein response. Mol Microbiol 57:621-628
-
(2005)
Mol Microbiol
, vol.57
, pp. 621-628
-
-
Darwin, A.J.1
-
15
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 3:945
-
(2012)
Nat Commun
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
16
-
-
35448938520
-
LeuO antagonizes H-NS and StpA-dependent repression in Salmonella enterica ompS1
-
De la Cruz MA, Fernandez-Mora M, Guadarrama C, Flores-Valdez MA, Bustamante VH, Vazquez A, Calva E (2007) LeuO antagonizes H-NS and StpA-dependent repression in Salmonella enterica ompS1. Mol Microbiol 66:727-743
-
(2007)
Mol Microbiol
, vol.66
, pp. 727-743
-
-
De La Cruz, M.A.1
Fernandez-Mora, M.2
Guadarrama, C.3
Flores-Valdez, M.A.4
Bustamante, V.H.5
Vazquez, A.6
Calva, E.7
-
17
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471:602-607
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
Eckert, M.R.7
Vogel, J.8
Charpentier, E.9
-
18
-
-
84859294085
-
Modulation ofCRISPRlocus transcription by the repeat-binding protein Cbp1 in Sulfolobus
-
Deng L, Kenchappa CS, Peng X, She Q, Garrett RA (2012) Modulation ofCRISPRlocus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res 40:2470-2480
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2470-2480
-
-
Deng, L.1
Kenchappa, C.S.2
Peng, X.3
She, Q.4
Garrett, R.A.5
-
20
-
-
77952820341
-
Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism
-
Dillon SC, Cameron AD, Hokamp K, Lucchini S, Hinton JC, Dorman CJ (2010) Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism. Mol Microbiol 76:1250-1265
-
(2010)
Mol Microbiol
, vol.76
, pp. 1250-1265
-
-
Dillon, S.C.1
Cameron, A.D.2
Hokamp, K.3
Lucchini, S.4
Hinton, J.C.5
Dorman, C.J.6
-
21
-
-
84866024286
-
LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium
-
Dillon SC, Espinosa E, Hokamp K, Ussery DW, Casadesus J, Dorman CJ (2012) LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol 85(6):1072-1089
-
(2012)
Mol Microbiol
, vol.85
, Issue.6
, pp. 1072-1089
-
-
Dillon, S.C.1
Espinosa, E.2
Hokamp, K.3
Ussery, D.W.4
Casadesus, J.5
Dorman, C.J.6
-
22
-
-
2442560235
-
H-NS: A universal regulator for a dynamic genome
-
Dorman CJ (2004) H-NS: a universal regulator for a dynamic genome. Nat Rev Microbiol 2: 391-400
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 391-400
-
-
Dorman, C.J.1
-
23
-
-
33846465923
-
H-NS, the genome sentinel
-
Dorman CJ (2007) H-NS, the genome sentinel. Nat Rev Microbiol 5:157-161
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 157-161
-
-
Dorman, C.J.1
-
24
-
-
33846511690
-
An H-NS-like stealth protein aids horizontal DNA transmission in bacteria
-
Doyle M, Fookes M, Ivens A, Mangan MW, Wain J, Dorman CJ (2007) An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science 315:251-252
-
(2007)
Science
, vol.315
, pp. 251-252
-
-
Doyle, M.1
Fookes, M.2
Ivens, A.3
Mangan, M.W.4
Wain, J.5
Dorman, C.J.6
-
25
-
-
78649342032
-
The Escherichia coli CRISPR system protects from {lambda}lysogenizatin, lysogens, and prophage induction
-
Edgar R, Qimron U (2010) The Escherichia coli CRISPR system protects from {lambda}lysogenizatin, lysogens, and prophage induction. J Bacteriol 192(23):6291-6294
-
(2010)
J Bacteriol
, vol.192
, Issue.23
, pp. 6291-6294
-
-
Edgar, R.1
Qimron, U.2
-
27
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa I, Vergnaud G, Pourcel C (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinf 8:172
-
(2007)
BMC Bioinf
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
28
-
-
83155167625
-
Small protein-mediated quorum sensing in a gram-negative bacterium
-
Han SW, Sriariyanun M, Lee SW, Sharma M, Bahar O, Bower Z, Ronald PC (2011) Small protein-mediated quorum sensing in a gram-negative bacterium. PLoS ONE 6:e29192
-
(2011)
Plos ONE
, vol.6
-
-
Han, S.W.1
Sriariyanun, M.2
Lee, S.W.3
Sharma, M.4
Bahar, O.5
Bower, Z.6
Ronald, P.C.7
-
29
-
-
39749126195
-
The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar Typhi
-
Hernandez-Lucas I, Gallego-Hernandez AL, Encarnacion S, Fernandez-Mora M, Martinez-Batallar AG, Salgado H, Oropeza R, Calva E (2008) The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar Typhi. J Bacteriol 190:1658-1670
-
(2008)
J Bacteriol
, vol.190
, pp. 1658-1670
-
-
Hernandez-Lucas, I.1
Gallego-Hernandez, A.L.2
Encarnacion, S.3
Fernandez-Mora, M.4
Martinez-Batallar, A.G.5
Salgado, H.6
Oropeza, R.7
Calva, E.8
-
30
-
-
0035047678
-
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS
-
Hommais F, Krin E, Laurent-Winter C, Soutourina O, Malpertuy A, Le Caer JP, Danchin A, Bertin P (2001) Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS. Mol Microbiol 40:20-36
-
(2001)
Mol Microbiol
, vol.40
, pp. 20-36
-
-
Hommais, F.1
Krin, E.2
Laurent-Winter, C.3
Soutourina, O.4
Malpertuy, A.5
Le Caer, J.P.6
Danchin, A.7
Bertin, P.8
-
31
-
-
0034679627
-
Role of ribosome recycling factor (RRF) in translational coupling
-
Inokuchi Y, Hirashima A, Sekine Y, Janosi L, Kaji A (2000) Role of ribosome recycling factor (RRF) in translational coupling. EMBO J 19:3788-3798
-
(2000)
EMBO J
, vol.19
, pp. 3788-3798
-
-
Inokuchi, Y.1
Hirashima, A.2
Sekine, Y.3
Janosi, L.4
Kaji, A.5
-
33
-
-
77649216620
-
Transcriptome analysis of Escherichia coli O157:H7 exposed to lysates of lettuce leaves
-
Kyle JL, Parker CT, Goudeau D, Brandl MT (2010) Transcriptome analysis of Escherichia coli O157:H7 exposed to lysates of lettuce leaves. Appl Environ Microbiol 76:1375-1387
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1375-1387
-
-
Kyle, J.L.1
Parker, C.T.2
Goudeau, D.3
Brandl, M.T.4
-
34
-
-
70449413848
-
A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity
-
Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald PC (2009) A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science 326:850-853
-
(2009)
Science
, vol.326
, pp. 850-853
-
-
Lee, S.W.1
Han, S.W.2
Sririyanum, M.3
Park, C.J.4
Seo, Y.S.5
Ronald, P.C.6
-
35
-
-
62949197925
-
CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
-
Lillestol RK, Shah SA, Brugger K, Redder P, Phan H, Christiansen J, Garrett RA (2009) CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 72:259-272
-
(2009)
Mol Microbiol
, vol.72
, pp. 259-272
-
-
Lillestol, R.K.1
Shah, S.A.2
Brugger, K.3
Redder, P.4
Phan, H.5
Christiansen, J.6
Garrett, R.A.7
-
36
-
-
79251598240
-
The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system
-
Lintner NG, Frankel KA, Tsutakawa SE, Alsbury DL, Copie V, Young MJ, Tainer JA, Lawrence CM (2011) The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. J Mol Biol 405:939-955
-
(2011)
J Mol Biol
, vol.405
, pp. 939-955
-
-
Lintner, N.G.1
Frankel, K.A.2
Tsutakawa, S.E.3
Alsbury, D.L.4
Copie, V.5
Young, M.J.6
Tainer, J.A.7
Lawrence, C.M.8
-
37
-
-
0027450801
-
Gene 5.5 protein of bacteriophage T7 inhibits the nucleoid protein H-NS of Escherichia coli
-
Liu Q, Richardson CC (1993) Gene 5.5 protein of bacteriophage T7 inhibits the nucleoid protein H-NS of Escherichia coli. Proc Natl Acad Sci U S A 90:1761-1765
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 1761-1765
-
-
Liu, Q.1
Richardson, C.C.2
-
38
-
-
69349099313
-
Role of translational coupling in robustness of bacterial chemotaxis pathway
-
Lovdok L, Bentele K, Vladimirov N, Muller A, Pop FS, Lebiedz D, Kollmann M, Sourjik V (2009) Role of translational coupling in robustness of bacterial chemotaxis pathway. PLoS Biol 7:e1000171
-
(2009)
Plos Biol
, vol.7
-
-
Lovdok, L.1
Bentele, K.2
Vladimirov, N.3
Muller, A.4
Pop, F.S.5
Lebiedz, D.6
Kollmann, M.7
Sourjik, V.8
-
39
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
Lucchini S, Rowley G, Goldberg MD, Hurd D, Harrison M, Hinton JC (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog 2:e81
-
(2006)
Plos Pathog
, vol.2
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.6
-
40
-
-
25144451503
-
The Rcs phosphorelay: A complex signal transduction system
-
Majdalani N, Gottesman S (2005) The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol 59:379-405
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 379-405
-
-
Majdalani, N.1
Gottesman, S.2
-
41
-
-
0035380083
-
LeuO expression in response to starvation for branched-chain amino acids
-
Majumder A, Fang M, Tsai KJ, Ueguchi C, Mizuno T, Wu HY (2001) LeuO expression in response to starvation for branched-chain amino acids. J Biol Chem 276:19046-19051
-
(2001)
J Biol Chem
, vol.276
, pp. 19046-19051
-
-
Majumder, A.1
Fang, M.2
Tsai, K.J.3
Ueguchi, C.4
Mizuno, T.5
Wu, H.Y.6
-
42
-
-
34248374277
-
A putative RNAinterference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies wiTheukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006) A putative RNAinterference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies wiTheukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 1:7
-
(2006)
Biol Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
43
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9:467-477
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
Van Der Oost, J.11
Koonin, E.V.12
-
44
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
-
Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA. Science 322:1843-1845
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
45
-
-
79956064746
-
The CRISPR/Cas immune system is an operon regulated by LeuO, H-NS and LRP in Salmonella enterica serovar Typhi
-
Medina-Aparicio L, Rebollar-Flores JE, Gallego-Hernandez AL, Vazquez A, Olvera L, Gutierrez-Rios RM, Calva E, Hernandez-Lucas I (2011) The CRISPR/Cas immune system is an operon regulated by LeuO, H-NS and LRP in Salmonella enterica serovar Typhi. J Bacteriol 193:2396-2407
-
(2011)
J Bacteriol
, vol.193
, pp. 2396-2407
-
-
Medina-Aparicio, L.1
Rebollar-Flores, J.E.2
Gallego-Hernandez, A.L.3
Vazquez, A.4
Olvera, L.5
Gutierrez-Rios, R.M.6
Calva, E.7
Hernandez-Lucas, I.8
-
46
-
-
0141605202
-
Identification and analysis of ‘extended-10’ promoters in Escherichia coli
-
Mitchell JE, Zheng D, Busby SJ, Minchin SD (2003) Identification and analysis of ‘extended-10’ promoters in Escherichia coli. Nucleic Acids Res 31:4689-4695
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4689-4695
-
-
Mitchell, J.E.1
Zheng, D.2
Busby, S.J.3
Minchin, S.D.4
-
47
-
-
77956624244
-
The on-offswitch of CRISPR immunity against phages in Escherichia coli
-
Mojica FJ, Diez-Villasenor C (2010) The on-offswitch of CRISPR immunity against phages in Escherichia coli. Mol Microbiol 77:1341-1345
-
(2010)
Mol Microbiol
, vol.77
, pp. 1341-1345
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
-
48
-
-
33746008173
-
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
-
Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ, Fang FC (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313:236-238
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
Porwollik, S.2
Wang, Y.3
McClelland, M.4
Rosen, H.5
Libby, S.J.6
Fang, F.C.7
-
49
-
-
34250724903
-
Silencing of xenogeneic DNA by H-NSfacilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA
-
Navarre WW, McClelland M, Libby SJ, Fang FC (2007) Silencing of xenogeneic DNA by H-NSfacilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev 21:1456-1471
-
(2007)
Genes Dev
, vol.21
, pp. 1456-1471
-
-
Navarre, W.W.1
McClelland, M.2
Libby, S.J.3
Fang, F.C.4
-
50
-
-
33745618956
-
Regulon and promoter analysis of the E. Coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress
-
Nonaka G, Blankschien M, Herman C, Gross CA, Rhodius VA (2006) Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Genes Dev 20:1776-1789
-
(2006)
Genes Dev
, vol.20
, pp. 1776-1789
-
-
Nonaka, G.1
Blankschien, M.2
Herman, C.3
Gross, C.A.4
Rhodius, V.A.5
-
51
-
-
33750898424
-
Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase
-
Oshima T, Ishikawa S, Kurokawa K, Aiba H, Ogasawara N (2006) Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res 13:141-153
-
(2006)
DNA Res
, vol.13
, pp. 141-153
-
-
Oshima, T.1
Ishikawa, S.2
Kurokawa, K.3
Aiba, H.4
Ogasawara, N.5
-
52
-
-
0037385757
-
Genus-specific protein binding to the large clusters of DNA repeats (Short regularly spaced repeats) present in Sulfolobus genomes
-
Peng X, Brugger K, Shen B, Chen L, She Q, Garrett RA (2003) Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J Bacteriol 185:2410-2417
-
(2003)
J Bacteriol
, vol.185
, pp. 2410-2417
-
-
Peng, X.1
Brugger, K.2
Shen, B.3
Chen, L.4
She, Q.5
Garrett, R.A.6
-
53
-
-
78751680634
-
Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli
-
Perez-Rodriguez R, Haitjema C, Huang Q, Nam KH, Bernardis S, Ke A, Delisa MP (2011) Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli. Mol Microbiol 79:584-599
-
(2011)
Mol Microbiol
, vol.79
, pp. 584-599
-
-
Perez-Rodriguez, R.1
Haitjema, C.2
Huang, Q.3
Nam, K.H.4
Bernardis, S.5
Ke, A.6
Delisa, M.P.7
-
54
-
-
77956628107
-
Transcription, processing and function of CRISPR cassettes in Escherichia coli
-
Pougach K, Semenova E, Bogdanova E, Datsenko KA, Djordjevic M, Wanner BL, Severinov K (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 77:1367-1379
-
(2010)
Mol Microbiol
, vol.77
, pp. 1367-1379
-
-
Pougach, K.1
Semenova, E.2
Bogdanova, E.3
Datsenko, K.A.4
Djordjevic, M.5
Wanner, B.L.6
Severinov, K.7
-
55
-
-
77949398275
-
Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
-
Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 75:1495-1512
-
(2010)
Mol Microbiol
, vol.75
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
56
-
-
19944402536
-
Envelope stress responses and Gram-negative bacterial pathogenesis
-
Raivio TL (2005) Envelope stress responses and Gram-negative bacterial pathogenesis. Mol Microbiol 56:1119-1128
-
(2005)
Mol Microbiol
, vol.56
, pp. 1119-1128
-
-
Raivio, T.L.1
-
57
-
-
78751685291
-
Identifying your enemies-could envelope stress trigger microbial immunity?
-
Raivio T (2011) Identifying your enemies-could envelope stress trigger microbial immunity? Mol Microbiol 79:557-561
-
(2011)
Mol Microbiol
, vol.79
, pp. 557-561
-
-
Raivio, T.1
-
58
-
-
84868111481
-
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
-
Richter H, Zoephel J, Schermuly J, Maticzka D, Backofen R, Randau L (2012) Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis. Nucleic Acids Res
-
(2012)
Nucleic Acids Res
-
-
Richter, H.1
Zoephel, J.2
Schermuly, J.3
Maticzka, D.4
Backofen, R.5
Randau, L.6
-
59
-
-
11144298928
-
Effect of inactivation of degS on Salmonella enterica serovar typhimurium in vitro and in vivo
-
Rowley G, Stevenson A, Kormanec J, Roberts M (2005) Effect of inactivation of degS on Salmonella enterica serovar typhimurium in vitro and in vivo. Infect Immun 73:459-463
-
(2005)
Infect Immun
, vol.73
, pp. 459-463
-
-
Rowley, G.1
Stevenson, A.2
Kormanec, J.3
Roberts, M.4
-
60
-
-
85060747986
-
Strategies for genome reduction in microbial genomes
-
Sakharkar KR, Chow VT (2005) Strategies for genome reduction in microbial genomes. Genome Inform 16(69-75):26
-
(2005)
Genome Inform
, vol.16
, Issue.69-75
, pp. 26
-
-
Sakharkar, K.R.1
Chow, V.T.2
-
61
-
-
67650293863
-
Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux
-
Shimada T, Yamamoto K, Ishihama A (2009) Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. J Bacteriol 191:4562-4571
-
(2009)
J Bacteriol
, vol.191
, pp. 4562-4571
-
-
Shimada, T.1
Yamamoto, K.2
Ishihama, A.3
-
62
-
-
79957788648
-
Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources
-
Shimada T, Fujita N, Yamamoto K, Ishihama A (2011) Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PLoS ONE 6:e20081
-
(2011)
Plos ONE
, vol.6
-
-
Shimada, T.1
Fujita, N.2
Yamamoto, K.3
Ishihama, A.4
-
63
-
-
34248359835
-
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8
-
Shinkai A, Kira S, Nakagawa N, Kashihara A, Kuramitsu S, Yokoyama S (2007) Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol 189:3891-3901
-
(2007)
J Bacteriol
, vol.189
, pp. 3891-3901
-
-
Shinkai, A.1
Kira, S.2
Nakagawa, N.3
Kashihara, A.4
Kuramitsu, S.5
Yokoyama, S.6
-
64
-
-
0014466739
-
Nucleotide distribution and functional orientation in the deoxyribonucleic acid of phage phi 80
-
Skalka A (1969) Nucleotide distribution and functional orientation in the deoxyribonucleic acid of phage phi 80. J Virol 3:150-156
-
(1969)
J Virol
, vol.3
, pp. 150-156
-
-
Skalka, A.1
-
65
-
-
79956214651
-
Phage encoded H-NS: A potential achilles heel in the bacterial defence system
-
Skennerton CT, Angly FE, Breitbart M, Bragg L, He S, McMahon KD, Hugenholtz P, Tyson GW (2011) Phage encoded H-NS: a potential achilles heel in the bacterial defence system. PLoS ONE 6:e20095
-
(2011)
Plos ONE
, vol.6
-
-
Skennerton, C.T.1
Angly, F.E.2
Breitbart, M.3
Bragg, L.4
He, S.5
McMahon, K.D.6
Hugenholtz, P.7
Tyson, G.W.8
-
66
-
-
77955085897
-
Self-targeting by CRISPR: Gene regulation or autoimmunity?
-
Stern A, Keren L, Wurtzel O, Amitai G, Sorek R (2010) Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26:335-340
-
(2010)
Trends Genet
, vol.26
, pp. 335-340
-
-
Stern, A.1
Keren, L.2
Wurtzel, O.3
Amitai, G.4
Sorek, R.5
-
67
-
-
53449102029
-
Anti-silencing: Overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria
-
Stoebel DM, Free A, Dorman CJ (2008) Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria. Microbiology 154:2533-2545
-
(2008)
Microbiology
, vol.154
, pp. 2533-2545
-
-
Stoebel, D.M.1
Free, A.2
Dorman, C.J.3
-
68
-
-
38649127863
-
Regulation of the yjjQ-bglJ operon encoding LuxR-type transcription factors and the divergent yjjP gene by H-NS and LeuO
-
Stratmann T, Madhusudan S, Schnetz K (2008) Regulation of the yjjQ-bglJ operon encoding LuxR-type transcription factors and the divergent yjjP gene by H-NS and LeuO. J Bacteriol 190:926-935
-
(2008)
J Bacteriol
, vol.190
, pp. 926-935
-
-
Stratmann, T.1
Madhusudan, S.2
Schnetz, K.3
-
69
-
-
84858276082
-
RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinants
-
Stratmann T, Pul U, Wurm R, Wagner R, Schnetz K (2012) RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinants. Mol Microbiol 83:1109-1123
-
(2012)
Mol Microbiol
, vol.83
, pp. 1109-1123
-
-
Stratmann, T.1
Pul, U.2
Wurm, R.3
Wagner, R.4
Schnetz, K.5
-
70
-
-
0023240043
-
The heat shock response of E. Coli is regulated by changes in the concentration of sigma 32
-
Straus DB, Walter WA, Gross CA (1987) The heat shock response of E. coli is regulated by changes in the concentration of sigma 32. Nature 329:348-351
-
(1987)
Nature
, vol.329
, pp. 348-351
-
-
Straus, D.B.1
Walter, W.A.2
Gross, C.A.3
-
72
-
-
33748350078
-
Extensive functional overlap between sigma factors in Escherichia coli
-
Wade JT, Roa DC, Grainger DC, Hurd D, Busby SJ, Struhl K, Nudler E (2006) Extensive functional overlap between sigma factors in Escherichia coli. Nat Struct Mol Biol 13:806-814
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 806-814
-
-
Wade, J.T.1
Roa, D.C.2
Grainger, D.C.3
Hurd, D.4
Busby, S.J.5
Struhl, K.6
Nudler, E.7
-
73
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters LS, Storz G (2009) Regulatory RNAs in bacteria. Cell 136:615-628
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
74
-
-
77956621546
-
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
-
Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, Wurm R, Raine A, Mescher M, Van Heereveld L, Mastop M, Wagner EG, Schnetz K, Van Der Oost J, Wagner R, Brouns SJ (2010) H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 77:1380-1393
-
(2010)
Mol Microbiol
, vol.77
, pp. 1380-1393
-
-
Westra, E.R.1
Pul, U.2
Heidrich, N.3
Jore, M.M.4
Lundgren, M.5
Stratmann, T.6
Wurm, R.7
Raine, A.8
Mescher, M.9
Van Heereveld, L.10
Mastop, M.11
Wagner, E.G.12
Schnetz, K.13
Van Der Oost, J.14
Wagner, R.15
Brouns, S.J.16
-
75
-
-
84861996069
-
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
-
Westra ER, van Erp PB, Kunne T, Wong SP, Staals RH, Seegers CL, Bollen S, Jore MM, Semenova E, Severinov K, de Vos WM, Dame RT, de Vries R, Brouns SJ, van der Oost J (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46:595-605
-
(2012)
Mol Cell
, vol.46
, pp. 595-605
-
-
Westra, E.R.1
Van Erp, P.B.2
Kunne, T.3
Wong, S.P.4
Staals, R.H.5
Seegers, C.L.6
Bollen, S.7
Jore, M.M.8
Semenova, E.9
Severinov, K.10
De Vos, W.M.11
Dame, R.T.12
De Vries, R.13
Brouns, S.J.14
Van Der Oost, J.15
-
76
-
-
0019160526
-
Temperature-induced synthesis of specific proteins in Escherichia coli: Evidence for transcriptional control
-
Yamamori T, Yura T (1980) Temperature-induced synthesis of specific proteins in Escherichia coli: evidence for transcriptional control. J Bacteriol 142:843-851
-
(1980)
J Bacteriol
, vol.142
, pp. 843-851
-
-
Yamamori, T.1
Yura, T.2
-
77
-
-
84055178649
-
High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system
-
Yosef I, Goren MG, Kiro R, Edgar R, Qimron U (2011) High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system. Proc Natl Acad Sci U S A 50(108):20136-20141
-
(2011)
Proc Natl Acad Sci U S A
, vol.50
, Issue.108
, pp. 20136-20141
-
-
Yosef, I.1
Goren, M.G.2
Kiro, R.3
Edgar, R.4
Qimron, U.5
-
78
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef I, Goren MG, Qimron U (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40:5569-5576
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
79
-
-
84861632698
-
Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus
-
Young JC, Dill BD, Pan C, Hettich RL, Banfield JF, Shah M, Fremaux C, Horvath P, Barrangou R, Verberkmoes NC (2012) Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. PLoS ONE 7:e38077
-
(2012)
Plos ONE
, vol.7
-
-
Young, J.C.1
Dill, B.D.2
Pan, C.3
Hettich, R.L.4
Banfield, J.F.5
Shah, M.6
Fremaux, C.7
Horvath, P.8
Barrangou, R.9
Verberkmoes, N.C.10
-
80
-
-
33846570431
-
In-frame overlapping genes: The challenges for regulating gene expression
-
Yu JS, Kokoska RJ, Khemici V, Steege DA (2007) In-frame overlapping genes: the challenges for regulating gene expression. Mol Microbiol 63:1158-1172
-
(2007)
Mol Microbiol
, vol.63
, pp. 1158-1172
-
-
Yu, J.S.1
Kokoska, R.J.2
Khemici, V.3
Steege, D.A.4
-
81
-
-
58149479228
-
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa
-
Zegans ME, Wagner JC, Cady KC, Murphy DM, Hammond JH, O’Toole GA (2009) Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J Bacteriol 191:210-219
-
(2009)
J Bacteriol
, vol.191
, pp. 210-219
-
-
Zegans, M.E.1
Wagner, J.C.2
Cady, K.C.3
Murphy, D.M.4
Hammond, J.H.5
O’Toole, G.A.6
-
82
-
-
7444245668
-
Identification of the CRP regulon using in vitro and in vivo transcriptional profiling
-
Zheng D, Constantinidou C, Hobman JL, Minchin SD (2004) Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Nucleic Acids Res 32:5874-5893
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5874-5893
-
-
Zheng, D.1
Constantinidou, C.2
Hobman, J.L.3
Minchin, S.D.4
|