메뉴 건너뛰기




Volumn , Issue , 2012, Pages 195-207

Synteny and genomic rearrangements

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84948088939     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-7091-1130-7_13     Document Type: Chapter
Times cited : (13)

References (99)
  • 2
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc G, Wolfe KH (2004) Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16:1667-1678
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 3
    • 0000258233 scopus 로고
    • RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato
    • Bonierbale MW, Plaisted RL, Tanksley SD (1988) RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 120:1095-1103
    • (1988) Genetics , vol.120 , pp. 1095-1103
    • Bonierbale, M.W.1    Plaisted, R.L.2    Tanksley, S.D.3
  • 4
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers JE, Chapman BA, Rong J, Paterson AH (2003a) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422:433-438
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 7
    • 1042276327 scopus 로고    scopus 로고
    • Fast identification and statistical evaluation of segmental homologies in comparative maps
    • Calabrese PP, Chakravarty S, Vision TJ (2003) Fast identification and statistical evaluation of segmental homologies in comparative maps. Bioinformatics 19(suppl 1):i74-i80
    • (2003) Bioinformatics , vol.19 , pp. i74-i80
    • Calabrese, P.P.1    Chakravarty, S.2    Vision, T.J.3
  • 8
    • 2942610254 scopus 로고    scopus 로고
    • DiagHunter and GenoPix2D: Programs for genomic comparisons, large-scale homology discovery and visualization
    • Cannon SB, Kozik A, Chan B, Michelmore R, Young ND (2003) DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biol 4: R68
    • (2003) Genome Biol , vol.4 , pp. R68
    • Cannon, S.B.1    Kozik, A.2    Chan, B.3    Michelmore, R.4    Young, N.D.5
  • 9
    • 1042269474 scopus 로고    scopus 로고
    • A comparative phylogenetic approach for dating whole genome duplication events
    • Chapman BA, Bowers JE, Schulze SR, Paterson AH (2004) A comparative phylogenetic approach for dating whole genome duplication events. Bioinformatics 20:180-185
    • (2004) Bioinformatics , vol.20 , pp. 180-185
    • Chapman, B.A.1    Bowers, J.E.2    Schulze, S.R.3    Paterson, A.H.4
  • 10
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
    • Chen F, Mackey AJ, Stoeckert CJ Jr, Roos DS (2006) OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res 34:D363-D368
    • (2006) Nucleic Acids Res , vol.34 , pp. D363-D368
    • Chen, F.1    Mackey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 11
    • 37849023306 scopus 로고    scopus 로고
    • Assessing performance of orthology detection strategies applied to eukaryotic genomes
    • Chen F, Mackey AJ, Vermunt JK, Roos DS (2007) Assessing performance of orthology detection strategies applied to eukaryotic genomes. PLoS One 2:e383
    • (2007) PLoS One , vol.2 , pp. e383
    • Chen, F.1    Mackey, A.J.2    Vermunt, J.K.3    Roos, D.S.4
  • 12
    • 2442707716 scopus 로고    scopus 로고
    • Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
    • Christoffels A, Koh EGL, Chia JM, Brenner S, Aparicio S, Venkatesh B (2004) Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol 21:1146-1151
    • (2004) Mol Biol Evol , vol.21 , pp. 1146-1151
    • Christoffels, A.1    Koh, E.G.L.2    Chia, J.M.3    Brenner, S.4    Aparicio, S.5    Venkatesh, B.6
  • 14
    • 27544478621 scopus 로고    scopus 로고
    • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
    • Consortia TRCaS, (2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol 3:20
    • (2005) BMC Biol , vol.3 , pp. 20
    • Consortia, T.R.C.S.1
  • 15
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Consortium MGS (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562
    • (2002) Nature , vol.420 , pp. 520-562
    • Consortium, M.G.S.1
  • 20
    • 0034636168 scopus 로고    scopus 로고
    • Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
    • Grant D, Cregan P, Shoemaker RC (2000) Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc Natl Acad Sci U S A 97:4168-4173
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4168-4173
    • Grant, D.1    Cregan, P.2    Shoemaker, R.C.3
  • 21
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu ZL, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH (2003) Role of duplicate genes in genetic robustness against null mutations. Nature 421:63-66
    • (2003) Nature , vol.421 , pp. 63-66
    • Gu, Z.L.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.H.6
  • 22
    • 12344335569 scopus 로고    scopus 로고
    • DAGchainer: A tool for mining segmental genome duplications and synteny
    • Haas BJ, Delcher AL, Wortman JR, Salzberg SL (2004) DAGchainer: a tool for mining segmental genome duplications and synteny. Bioinformatics 20:3643-3646
    • (2004) Bioinformatics , vol.20 , pp. 3643-3646
    • Haas, B.J.1    Delcher, A.L.2    Wortman, J.R.3    Salzberg, S.L.4
  • 23
    • 33646750303 scopus 로고    scopus 로고
    • Comparative gene mapping in Arabidopsis lyrata chromosomes 1 and 2 and the corresponding A. thaliana chromosome 1: Recombination rates, rearrangements and centromere location
    • Hansson B, Kawabe A, Preuss S, Kuittinen H, Charlesworth D (2006) Comparative gene mapping in Arabidopsis lyrata chromosomes 1 and 2 and the corresponding A. thaliana chromosome 1: recombination rates, rearrangements and centromere location. Genet Res 87:75-85
    • (2006) Genet Res , vol.87 , pp. 75-85
    • Hansson, B.1    Kawabe, A.2    Preuss, S.3    Kuittinen, H.4    Charlesworth, D.5
  • 24
    • 15544389841 scopus 로고    scopus 로고
    • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
    • He XL, Zhang JZ (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169:1157-1164
    • (2005) Genetics , vol.169 , pp. 1157-1164
    • He, X.L.1    Zhang, J.Z.2
  • 25
    • 68149144366 scopus 로고    scopus 로고
    • Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • Hollister JD, Gaut BS (2009) Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res 19:1419-1428
    • (2009) Genome Res , vol.19 , pp. 1419-1428
    • Hollister, J.D.1    Gaut, B.S.2
  • 26
    • 79952303685 scopus 로고    scopus 로고
    • Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
    • Hollister JD, Smith LM, Guo YL, Weigel D, Gaut BS (2011) Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci U S A 108:2322-2327
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 2322-2327
    • Hollister, J.D.1    Smith, L.M.2    Guo, Y.L.3    Weigel, D.4    Gaut, B.S.5
  • 27
    • 0025352557 scopus 로고
    • Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes
    • Hulbert SH, Richter TE, Axtell JD, Bennetzen JL (1990) Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc Natl Acad Sci U S A 87:4251-4255
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4251-4255
    • Hulbert, S.H.1    Richter, T.E.2    Axtell, J.D.3    Bennetzen, J.L.4
  • 28
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • Jaillon O, Aury JM et al (2007a) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-467
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2
  • 31
    • 33746388441 scopus 로고    scopus 로고
    • Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana
    • Kawabe A, Hansson B, Hagenblad J, Forrest A, Charlesworth D (2006) Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana. Genetics 173:1613-1619
    • (2006) Genetics , vol.173 , pp. 1613-1619
    • Kawabe, A.1    Hansson, B.2    Hagenblad, J.3    Forrest, A.4    Charlesworth, D.5
  • 32
    • 0141815478 scopus 로고    scopus 로고
    • Evolution’s cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
    • Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D (2003) Evolution’s cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A 100:11484-11489
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5
  • 34
    • 0028141195 scopus 로고
    • Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions
    • Kishimoto N, Higo H, Abe K, Arai S, Saito A, Higo K (1994) Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions. Theor Appl Genet 88:722-726
    • (1994) Theor Appl Genet , vol.88 , pp. 722-726
    • Kishimoto, N.1    Higo, H.2    Abe, K.3    Arai, S.4    Saito, A.5    Higo, K.6
  • 35
    • 16244366488 scopus 로고    scopus 로고
    • Genome evolution among cruciferous plants: A lecture from the comparison of the genetic maps of three diploid species-Capsella rubella, Arabidopsis lyrata ssp. petraea, and A. thaliana
    • Koch MA, Kiefer M (2005) Genome evolution among cruciferous plants: A lecture from the comparison of the genetic maps of three diploid species-Capsella rubella, Arabidopsis lyrata ssp. petraea, and A. thaliana. Am J Bot 92:761-767
    • (2005) Am J Bot , vol.92 , pp. 761-767
    • Koch, M.A.1    Kiefer, M.2
  • 36
    • 0034255126 scopus 로고    scopus 로고
    • Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
    • Ku HM, Vision T, Liu JP, Tanksley SD (2000) Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci U S A 97:9121-9126
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 9121-9126
    • Ku, H.M.1    Vision, T.2    Liu, J.P.3    Tanksley, S.D.4
  • 38
    • 0034772943 scopus 로고    scopus 로고
    • Genome organization in dicots. II. Arabidopsis as a ‘bridging species’ to resolve genome evolution events among legumes
    • Lee JM, Grant D, Vallejos CE, Shoemaker RC (2001) Genome organization in dicots. II. Arabidopsis as a ‘bridging species’ to resolve genome evolution events among legumes. Theor Appl Genet 103:765-773
    • (2001) Theor Appl Genet , vol.103 , pp. 765-773
    • Lee, J.M.1    Grant, D.2    Vallejos, C.E.3    Shoemaker, R.C.4
  • 39
    • 0029095480 scopus 로고
    • Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population
    • Lin Y, Schertz K, Paterson A (1995) Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141:391-411
    • (1995) Genetics , vol.141 , pp. 391-411
    • Lin, Y.1    Schertz, K.2    Paterson, A.3
  • 41
    • 0035215379 scopus 로고    scopus 로고
    • Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order
    • Liu H, Sachidanandam R, Stein L (2001) Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order. Genome Res 11:2020-2026
    • (2001) Genome Res , vol.11 , pp. 2020-2026
    • Liu, H.1    Sachidanandam, R.2    Stein, L.3
  • 42
    • 30744475434 scopus 로고    scopus 로고
    • The origins of eukaryotic gene structure
    • Lynch M (2006) The origins of eukaryotic gene structure. Mol Biol Evol 23:450-468
    • (2006) Mol Biol Evol , vol.23 , pp. 450-468
    • Lynch, M.1
  • 43
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch M, Conery JS (2003) The origins of genome complexity. Science 302:1401-1404
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 44
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch M, Force A (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459-473
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 45
    • 0035697435 scopus 로고    scopus 로고
    • The probability of preservation of a newly arisen gene duplicate
    • Lynch M, O’Hely M, Walsh B, Force A (2001) The probability of preservation of a newly arisen gene duplicate. Genetics 159:1789-1804
    • (2001) Genetics , vol.159 , pp. 1789-1804
    • Lynch, M.1    O’Hely, M.2    Walsh, B.3    Force, A.4
  • 49
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O’Brien KP, Remm M, Sonnhammer EL (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res 33: D476-D480
    • (2005) Nucleic Acids Res , vol.33 , pp. D476-D480
    • O’Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.3
  • 54
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE, Chapman BA (2004) Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci U S A 101:9903-9908
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 55
    • 28844493457 scopus 로고    scopus 로고
    • Grains of knowledge: Genomics of model cereals
    • Paterson AH, Freeling M, Sasaki T (2005a) Grains of knowledge: genomics of model cereals. Genome Res 15:1643-1650
    • (2005) Genome Res , vol.15 , pp. 1643-1650
    • Paterson, A.H.1    Freeling, M.2    Sasaki, T.3
  • 59
    • 77956816001 scopus 로고    scopus 로고
    • The largest eukaryotic genome of them all?
    • Pellicer J, Fay MF, Leitch IJ (2010) The largest eukaryotic genome of them all? Bot J Linn Soc 164:10-15
    • (2010) Bot J Linn Soc , vol.164 , pp. 10-15
    • Pellicer, J.1    Fay, M.F.2    Leitch, I.J.3
  • 60
    • 0036843242 scopus 로고    scopus 로고
    • Efficient capture of unique sequences from eukaryotic genomes
    • Peterson DG, Wessler SR, Paterson AH (2002) Efficient capture of unique sequences from eukaryotic genomes. Trends Genet 18:547-550
    • (2002) Trends Genet , vol.18 , pp. 547-550
    • Peterson, D.G.1    Wessler, S.R.2    Paterson, A.H.3
  • 61
    • 22844439628 scopus 로고    scopus 로고
    • Placing paleopolyploidy in relation to taxon divergence: A phylogenetic analysis in legumes using 39 gene families
    • Pfeil BE, Schlueter JA, Shoemaker RC, Doyle JJ (2005) Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families. Syst Biol 54:441-454
    • (2005) Syst Biol , vol.54 , pp. 441-454
    • Pfeil, B.E.1    Schlueter, J.A.2    Shoemaker, R.C.3    Doyle, J.J.4
  • 62
    • 0035032414 scopus 로고    scopus 로고
    • Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes
    • Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T, Schumacher K, Schmitz G, Schmidt R (2001) Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes. Plant Cell 13:979-988
    • (2001) Plant Cell , vol.13 , pp. 979-988
    • Rossberg, M.1    Theres, K.2    Acarkan, A.3    Herrero, R.4    Schmitt, T.5    Schumacher, K.6    Schmitz, G.7    Schmidt, R.8
  • 63
    • 0036606406 scopus 로고    scopus 로고
    • Synteny between Arabidopsis thaliana and rice at the genome level: A tool to identify conservation in the ongoing rice genome sequencing project
    • Salse J, Piegu B, Cooke R, Delseny M (2002) Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project. Nucleic Acids Res 30:2317-2328
    • (2002) Nucleic Acids Res , vol.30 , pp. 2317-2328
    • Salse, J.1    Piegu, B.2    Cooke, R.3    Delseny, M.4
  • 64
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH (2006) Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440:341-345
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 66
    • 33745478966 scopus 로고    scopus 로고
    • Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
    • Schranz ME, Mitchell-Olds T (2006) Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. Plant Cell 18:1152-1165
    • (2006) Plant Cell , vol.18 , pp. 1152-1165
    • Schranz, M.E.1    Mitchell-Olds, T.2
  • 67
    • 2342554268 scopus 로고    scopus 로고
    • Building genomic profiles for uncovering segmental homology in the twilight zone
    • Simillion C, Vandepoele K, Saeys Y, Van de Peer Y (2004) Building genomic profiles for uncovering segmental homology in the twilight zone. Genome Res 14:1095-1106
    • (2004) Genome Res , vol.14 , pp. 1095-1106
    • Simillion, C.1    Vandepoele, K.2    Saeys, Y.3    Van de Peer, Y.4
  • 69
    • 53349160132 scopus 로고    scopus 로고
    • Rates of molecular evolution are linked to life history in flowering plants
    • Smith SA, Donoghue MJ (2008) Rates of molecular evolution are linked to life history in flowering plants. Science 322:86-89
    • (2008) Science , vol.322 , pp. 86-89
    • Smith, S.A.1    Donoghue, M.J.2
  • 70
    • 0036110294 scopus 로고    scopus 로고
    • Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q
    • Smith SF, Snell P, Gruetzner F, Bench AJ, Haaf T, Metcalfe JA, Green AR, Elgar G (2002) Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q. Genome Res 12:776-784
    • (2002) Genome Res , vol.12 , pp. 776-784
    • Smith, S.F.1    Snell, P.2    Gruetzner, F.3    Bench, A.J.4    Haaf, T.5    Metcalfe, J.A.6    Green, A.R.7    Elgar, G.8
  • 72
    • 34547730221 scopus 로고    scopus 로고
    • Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes
    • Srinivasachary DMM, Gale MD, Devos KM (2007) Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes. Theor Appl Genet 115:489-499
    • (2007) Theor Appl Genet , vol.115 , pp. 489-499
    • Srinivasachary, D.M.M.1    Gale, M.D.2    Devos, K.M.3
  • 73
    • 0000362824 scopus 로고
    • Chromosomal variation and evolution; polyploidy and chromosome size and number shed light on evolutionary processes in higher plants
    • Stebbins G (1966) Chromosomal variation and evolution; polyploidy and chromosome size and number shed light on evolutionary processes in higher plants. Science 152:1463-1469
    • (1966) Science , vol.152 , pp. 1463-1469
    • Stebbins, G.1
  • 74
    • 0000032326 scopus 로고
    • Possible significance of duplications in evolution
    • Stephens S (1951) Possible significance of duplications in evolution. Adv Genet 4:247-265
    • (1951) Adv Genet , vol.4 , pp. 247-265
    • Stephens, S.1
  • 75
    • 0036173130 scopus 로고    scopus 로고
    • Automated ortholog inference from phylogenetic trees and calculation of orthology reliability
    • Storm CE, Sonnhammer EL (2002) Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 18:92-99
    • (2002) Bioinformatics , vol.18 , pp. 92-99
    • Storm, C.E.1    Sonnhammer, E.L.2
  • 76
    • 0142028973 scopus 로고    scopus 로고
    • Comprehensive analysis of orthologous protein domains using the HOPS database
    • Storm CE, Sonnhammer EL (2003) Comprehensive analysis of orthologous protein domains using the HOPS database. Genome Res 13:2353-2362
    • (2003) Genome Res , vol.13 , pp. 2353-2362
    • Storm, C.E.1    Sonnhammer, E.L.2
  • 79
    • 14744275063 scopus 로고    scopus 로고
    • Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum
    • Swigonova Z, Bennetzen JL, Messing J (2005) Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics 169:891-906
    • (2005) Genetics , vol.169 , pp. 891-906
    • Swigonova, Z.1    Bennetzen, J.L.2    Messing, J.3
  • 81
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
    • Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH (2008b) Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res 18:1944-1954
    • (2008) Genome Res , vol.18 , pp. 1944-1954
    • Tang, H.1    Wang, X.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 82
    • 76249106402 scopus 로고    scopus 로고
    • Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
    • Tang H, Bowers JE, Wang X, Paterson AH (2010) Angiosperm genome comparisons reveal early polyploidy in the monocot lineage. Proc Natl Acad Sci U S A 107:472-477
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 472-477
    • Tang, H.1    Bowers, J.E.2    Wang, X.3    Paterson, A.H.4
  • 85
    • 5044230820 scopus 로고    scopus 로고
    • Computational approaches to unveiling ancient genome duplications
    • Van de Peer Y (2004) Computational approaches to unveiling ancient genome duplications. Nat Rev Genet 5:752-763
    • (2004) Nat Rev Genet , vol.5 , pp. 752-763
    • Van de Peer, Y.1
  • 86
    • 0036852286 scopus 로고    scopus 로고
    • The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice
    • Vandepoele K, Saeys Y, Simillion C, Raes J, Van de Peer Y (2002a) The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. Genome Res 12:1792-1801
    • (2002) Genome Res , vol.12 , pp. 1792-1801
    • Vandepoele, K.1    Saeys, Y.2    Simillion, C.3    Raes, J.4    Van de Peer, Y.5
  • 87
    • 0036889658 scopus 로고    scopus 로고
    • Detecting the undetectable: Uncovering duplicated segments in Arabidopsis by comparison with rice
    • Vandepoele K, Simillion C, Van de Peer Y (2002b) Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice. Trends Genet 18:606-608
    • (2002) Trends Genet , vol.18 , pp. 606-608
    • Vandepoele, K.1    Simillion, C.2    Van de Peer, Y.3
  • 88
    • 0141564555 scopus 로고    scopus 로고
    • Evidence that rice and other cereals are ancient aneuploids
    • Vandepoele K, Simillion C, Van de Peer Y (2003) Evidence that rice and other cereals are ancient aneuploids. Plant Cell 15:2192-2202
    • (2003) Plant Cell , vol.15 , pp. 2192-2202
    • Vandepoele, K.1    Simillion, C.2    Van de Peer, Y.3
  • 89
    • 14244250895 scopus 로고    scopus 로고
    • Duplication and DNA segmental loss in the rice genome: Implications for diploidization
    • Wang X, Shi X, Hao B, Ge S, Luo J (2005) Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol 165:937-946
    • (2005) New Phytol , vol.165 , pp. 937-946
    • Wang, X.1    Shi, X.2    Hao, B.3    Ge, S.4    Luo, J.5
  • 90
    • 33750489449 scopus 로고    scopus 로고
    • Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
    • Wang XY, Shi XL, Li Z, Zhu QH, Kong L, Tang W, Ge S, Luo JC (2006) Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice. BMC Bioinformatics 7:447
    • (2006) BMC Bioinformatics , vol.7 , pp. 447
    • Wang, X.Y.1    Shi, X.L.2    Li, Z.3    Zhu, Q.H.4    Kong, L.5    Tang, W.6    Ge, S.7    Luo, J.C.8
  • 91
    • 37249045857 scopus 로고    scopus 로고
    • Extensive concerted evolution of rice paralogs and the road to regaining independence
    • Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH (2007) Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics 177:1753-1763
    • (2007) Genetics , vol.177 , pp. 1753-1763
    • Wang, X.1    Tang, H.2    Bowers, J.E.3    Feltus, F.A.4    Paterson, A.H.5
  • 92
    • 66449122207 scopus 로고    scopus 로고
    • Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization
    • Wang X, Tang H, Bowers JE, Paterson AH (2009) Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization. Genome Res 19:1026-1032
    • (2009) Genome Res , vol.19 , pp. 1026-1032
    • Wang, X.1    Tang, H.2    Bowers, J.E.3    Paterson, A.H.4
  • 93
    • 79952301890 scopus 로고    scopus 로고
    • Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages
    • Wang X, Tang H, Paterson AH (2011) Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages. Plant Cell 23:27-37
    • (2011) Plant Cell , vol.23 , pp. 27-37
    • Wang, X.1    Tang, H.2    Paterson, A.H.3
  • 95
    • 0001604836 scopus 로고
    • A model for divergent, allopatric speciation of polyploid pteridophytes resulting from silencing of duplicate-gene expression
    • Werth CR, Windham MD (1991) A model for divergent, allopatric speciation of polyploid pteridophytes resulting from silencing of duplicate-gene expression. Am Natur 137:515-526
    • (1991) Am Natur , vol.137 , pp. 515-526
    • Werth, C.R.1    Windham, M.D.2
  • 96
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
    • Yang YW, Lai KN, Tai PY, Li WH (1999) Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol 48:597-604
    • (1999) J Mol Evol , vol.48 , pp. 597-604
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Li, W.H.4
  • 97
    • 17844387345 scopus 로고    scopus 로고
    • Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana
    • Yogeeswaran K, Frary A, York TL, Amenta A, Lesser AH, Nasrallah JB, Tanksley SD, Nasrallah ME (2005) Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. Genome Res 15:505-515
    • (2005) Genome Res , vol.15 , pp. 505-515
    • Yogeeswaran, K.1    Frary, A.2    York, T.L.3    Amenta, A.4    Lesser, A.H.5    Nasrallah, J.B.6    Tanksley, S.D.7    Nasrallah, M.E.8
  • 99
    • 0013017592 scopus 로고    scopus 로고
    • RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
    • Zmasek CM, Eddy SR (2002) RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 3:14
    • (2002) BMC Bioinformatics , vol.3 , pp. 14
    • Zmasek, C.M.1    Eddy, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.