Mscentipede: Modeling heterogeneity across genomic sites and replicates improves accuracy in the inference of transcription factor binding

PLoS ONE

Volumn 10, Issue 9, 2015, Pages

  Raj, Anil ^a   Shim, Heejung ^b,d   Gilad, Yoav ^b   Pritchard, Jonathan K ^a,c   Stephens, Matthew ^b  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^d PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE I; TRANSCRIPTION FACTOR; PROTEIN BINDING;

ARTICLE; DNA CLEAVAGE; DNA REPLICATION; DNA SEQUENCE; DNA STRUCTURE; GENETIC HETEROGENEITY; GENETIC VARIABILITY; HUMAN; HUMAN CELL; LYMPHOBLASTOID CELL LINE; MEASUREMENT ACCURACY; MSCENTIPEDE; NUCLEOTIDE BINDING SITE; PROTEIN BINDING; SEQUENCE DATABASE; ALGORITHM; BIOLOGICAL MODEL; DNA RESPONSIVE ELEMENT; GENE EXPRESSION REGULATION; METABOLISM; PHYSIOLOGY; TUMOR CELL LINE;

ALGORITHMS; CELL LINE, TUMOR; GENE EXPRESSION REGULATION; HUMANS; MODELS, GENETIC; PROTEIN BINDING; RESPONSE ELEMENTS; TRANSCRIPTION FACTORS;

EID: 84947776702     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0138030     Document Type: Article

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