메뉴 건너뛰기




Volumn 23, Issue 3, 2015, Pages 495-503

Transcription of subtelomere tandemly repetitive DNA in chicken embryogenesis

Author keywords

Chicken; Embryogenesis; Mitosis; Non coding RNA; Subtelomere; Tandem repeat; Transcription; Whole mount in situ hybridization

Indexed keywords

POLYADENYLATED RNA; REPETITIVE DNA; SINGLE STRANDED RNA; UNTRANSLATED RNA;

EID: 84947487812     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-015-9487-3     Document Type: Article
Times cited : (9)

References (36)
  • 1
    • 84878792718 scopus 로고    scopus 로고
    • A multifaceted FISH approach to study endogenous RNAs and DNAs in native nuclear and cell structures
    • Byron M, Hall LL, Lawrence JB (2013) A multifaceted FISH approach to study endogenous RNAs and DNAs in native nuclear and cell structures. Curr Protoc Hum Genet 76:4.15.1–4.15.21
    • (2013) Curr Protoc Hum Genet , vol.76
    • Byron, M.1    Hall, L.L.2    Lawrence, J.B.3
  • 2
    • 0030034051 scopus 로고    scopus 로고
    • XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear chromosome structure
    • COI: 1:CAS:528:DyaK28XpsVaqsQ%3D%3D, PID: 8636206
    • Clemson CM, McNeil JA, Willard HF, Lawrence JB (1996) XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear chromosome structure. J Cell Biol 132:259–275
    • (1996) J Cell Biol , vol.132 , pp. 259-275
    • Clemson, C.M.1    McNeil, J.A.2    Willard, H.F.3    Lawrence, J.B.4
  • 3
    • 34547642518 scopus 로고    scopus 로고
    • GEISHA: an in situ hybridization gene expression resource for the chicken embryo
    • COI: 1:CAS:528:DC%2BD2sXosFKisLs%3D, PID: 17675842
    • Darnell DK, Kaur S, Stanislaw S et al (2007) GEISHA: an in situ hybridization gene expression resource for the chicken embryo. Cytogenet Genome Res 117:30–35
    • (2007) Cytogenet Genome Res , vol.117 , pp. 30-35
    • Darnell, D.K.1    Kaur, S.2    Stanislaw, S.3
  • 4
    • 84868513499 scopus 로고    scopus 로고
    • Formation of telomeric repeat-containing RNA (TERRA) foci in highly proliferating mouse cerebellar neuronal progenitors and medulloblastoma
    • COI: 1:CAS:528:DC%2BC38XhvVGntb3I, PID: 22641694
    • Deng Z, Wang Z, Xiang C et al (2012) Formation of telomeric repeat-containing RNA (TERRA) foci in highly proliferating mouse cerebellar neuronal progenitors and medulloblastoma. J Cell Sci 125:4383–4394
    • (2012) J Cell Sci , vol.125 , pp. 4383-4394
    • Deng, Z.1    Wang, Z.2    Xiang, C.3
  • 5
    • 36248981076 scopus 로고    scopus 로고
    • Tandem 41-bp repeats in chicken and Japanese quail genomes: FISH mapping and transcription analysis on lampbrush chromosomes
    • COI: 1:CAS:528:DC%2BD2sXht12ktLvM, PID: 17619894
    • Deryusheva S, Krasikova A, Kulikova T, Gaginskaya E (2007) Tandem 41-bp repeats in chicken and Japanese quail genomes: FISH mapping and transcription analysis on lampbrush chromosomes. Chromosoma 116:519–530
    • (2007) Chromosoma , vol.116 , pp. 519-530
    • Deryusheva, S.1    Krasikova, A.2    Kulikova, T.3    Gaginskaya, E.4
  • 6
    • 0032898752 scopus 로고    scopus 로고
    • Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis
    • COI: 1:CAS:528:DyaK1MXht12isL0%3D, PID: 9931327
    • Duthie SM, Nesterova TB, Formstone EJ et al (1999) Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis. Hum Mol Genet 8:195–204
    • (1999) Hum Mol Genet , vol.8 , pp. 195-204
    • Duthie, S.M.1    Nesterova, T.B.2    Formstone, E.J.3
  • 8
    • 34848878368 scopus 로고    scopus 로고
    • Human chromosome 1 satellite 3 DNA is decondensed, demethylated and transcribed in senescent cells and in A431 epithelial carcinoma cells
    • COI: 1:CAS:528:DC%2BD2sXhtV2msbjF, PID: 17901699
    • Enukashvily NI, Donev R, Waisertreiger IS, Podgornaya OI (2007) Human chromosome 1 satellite 3 DNA is decondensed, demethylated and transcribed in senescent cells and in A431 epithelial carcinoma cells. Cytogenet Genome Res 118:42–54
    • (2007) Cytogenet Genome Res , vol.118 , pp. 42-54
    • Enukashvily, N.I.1    Donev, R.2    Waisertreiger, I.S.3    Podgornaya, O.I.4
  • 9
    • 70349303348 scopus 로고    scopus 로고
    • The secret message of heterochromatin: new insights into the mechanisms and function of centromeric and pericentric repeat sequence transcription
    • COI: 1:CAS:528:DC%2BD1MXptVektbg%3D
    • Eymery А, Callanan М, Vourc’h С (2009a) The secret message of heterochromatin: new insights into the mechanisms and function of centromeric and pericentric repeat sequence transcription. Dev Biol 53:259–268
    • (2009) Dev Biol , vol.53 , pp. 259-268
    • Eymery, А.1    Callanan, М.2    Vourc’h, С.3
  • 10
    • 71049188001 scopus 로고    scopus 로고
    • A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells
    • COI: 1:CAS:528:DC%2BD1MXhtlGju7vN, PID: 19720732
    • Eymery A, Horard B, Atifi-Borel M et al (2009b) A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells. Nucleic Acids Res 37:6340–6354
    • (2009) Nucleic Acids Res , vol.37 , pp. 6340-6354
    • Eymery, A.1    Horard, B.2    Atifi-Borel, M.3
  • 11
    • 4143149753 scopus 로고    scopus 로고
    • Dicer is essential for formation of the heterochromatin structure in vertebrate cells
    • COI: 1:CAS:528:DC%2BD2cXmtlOqt7k%3D, PID: 15247924
    • Fukagawa T, Nogami M, Yoshikawa M et al (2004) Dicer is essential for formation of the heterochromatin structure in vertebrate cells. Nat Cell Biol 6:784–791
    • (2004) Nat Cell Biol , vol.6 , pp. 784-791
    • Fukagawa, T.1    Nogami, M.2    Yoshikawa, M.3
  • 12
    • 84896840947 scopus 로고    scopus 로고
    • 0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes
    • COI: 1:CAS:528:DC%2BC2cXjsVWqs7s%3D, PID: 24581492
    • 0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes. Cell 156:907–919
    • (2014) Cell , vol.156 , pp. 907-919
    • Hall, L.L.1    Carone, D.M.2    Gomez, A.V.3
  • 13
    • 0027018236 scopus 로고
    • A series of normal stages in the development of the chick embryo
    • Hamburger V, Hamilton H (1951) A series of normal stages in the development of the chick embryo. Dev Dyn 195:231–272
    • (1951) Dev Dyn , vol.195 , pp. 231-272
    • Hamburger, V.1    Hamilton, H.2
  • 14
    • 84894891286 scopus 로고    scopus 로고
    • Localisation and transcription of human chromosome 1 pericentromeric heterochromatin in embryonic and extraembryonic tissues
    • COI: 1:CAS:528:DC%2BC38XhtFCmtLfI
    • Kuznetzova TV, Enukashvily NI, Trofimova IL, Gorbunova AV, Vashukova ES, Baranov VS (2012) Localisation and transcription of human chromosome 1 pericentromeric heterochromatin in embryonic and extraembryonic tissues. Med Genetics 11:19–24
    • (2012) Med Genetics , vol.11 , pp. 19-24
    • Kuznetzova, T.V.1    Enukashvily, N.I.2    Trofimova, I.L.3    Gorbunova, A.V.4    Vashukova, E.S.5    Baranov, V.S.6
  • 15
    • 33750932803 scopus 로고    scopus 로고
    • Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice
    • COI: 1:CAS:528:DC%2BD28Xht1ejtbvN, PID: 16987952
    • Lee H-R, Neumann P, Macas J, Jiang J (2006) Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Mol Biol Evol 23:2505–2520
    • (2006) Mol Biol Evol , vol.23 , pp. 2505-2520
    • Lee, H.-R.1    Neumann, P.2    Macas, J.3    Jiang, J.4
  • 16
    • 84866436963 scopus 로고    scopus 로고
    • The repetitive DNA content of eukaryotic genomes
    • Garrido-Ramos MA, (ed), Karger, Basel
    • Lopez-Flores I, Garrido-Ramos MA (2012) The repetitive DNA content of eukaryotic genomes. In: Garrido-Ramos MA (ed) Genome Dynamics 7. Karger, Basel, pp 1–28
    • (2012) Genome Dynamics 7 , pp. 1-28
    • Lopez-Flores, I.1    Garrido-Ramos, M.A.2
  • 17
    • 69849104275 scopus 로고    scopus 로고
    • TERRA: telomeric repeat-containing RNA
    • COI: 1:CAS:528:DC%2BD1MXotlSntb8%3D, PID: 19629047
    • Luke B, Lingner J (2009) TERRA: telomeric repeat-containing RNA. EMBO J 28:2503–2510
    • (2009) EMBO J , vol.28 , pp. 2503-2510
    • Luke, B.1    Lingner, J.2
  • 18
    • 55449108640 scopus 로고    scopus 로고
    • Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats
    • COI: 1:CAS:528:DC%2BD28XisVWgsg%3D%3D
    • May BP, Lippman ZB, Fang Y, Spector DL, Martienssen RA (2005) Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet 1:0705–0714
    • (2005) PLoS Genet , vol.1 , pp. 0705-0714
    • May, B.P.1    Lippman, Z.B.2    Fang, Y.3    Spector, D.L.4    Martienssen, R.A.5
  • 19
    • 78751474118 scopus 로고    scopus 로고
    • Non-coding RNAs as regulators of embryogenesis
    • COI: 1:CAS:528:DC%2BC3MXmsVeltg%3D%3D, PID: 21245830
    • Pauli A, Rinn JL, Schier AF (2011) Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet 12:136–149
    • (2011) Nat Rev Genet , vol.12 , pp. 136-149
    • Pauli, A.1    Rinn, J.L.2    Schier, A.F.3
  • 20
    • 40749123649 scopus 로고    scopus 로고
    • Whole-mount in situ hybridization and detection of RNAs in vertebrate embryos and isolated organs
    • Ausubel FM, (ed), Greene Pub. Associates, Wiley-Interscience, New York
    • Pizard A, Haramis A, Carrasco AE, Franco P, López S, Paganelli A (2004) Whole-mount in situ hybridization and detection of RNAs in vertebrate embryos and isolated organs. In: Ausubel FM (ed) Current Protocols in Molecular Biology. Greene Pub. Associates, Wiley-Interscience, New York, pp 14.9.1–14.9.24
    • (2004) Current Protocols in Molecular Biology
    • Pizard, A.1    Haramis, A.2    Carrasco, A.E.3    Franco, P.4    López, S.5    Paganelli, A.6
  • 21
    • 38149019842 scopus 로고    scopus 로고
    • Pericentric heterochromatin: dynamic organization during early development in mammals
    • COI: 1:CAS:528:DC%2BD1cXitF2qt78%3D, PID: 17825083
    • Probst AV, Almouzni G (2008) Pericentric heterochromatin: dynamic organization during early development in mammals. Differentiation 76:15–23
    • (2008) Differentiation , vol.76 , pp. 15-23
    • Probst, A.V.1    Almouzni, G.2
  • 22
    • 79955084061 scopus 로고    scopus 로고
    • Heterochromatin establishment in the context of genome-wide epigenetic reprogramming
    • COI: 1:CAS:528:DC%2BC3MXltFCitbc%3D, PID: 21497937
    • Probst AV, Almouzni G (2011) Heterochromatin establishment in the context of genome-wide epigenetic reprogramming. Trends Genet 27:177–185
    • (2011) Trends Genet , vol.27 , pp. 177-185
    • Probst, A.V.1    Almouzni, G.2
  • 23
    • 77957857693 scopus 로고    scopus 로고
    • A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development
    • COI: 1:CAS:528:DC%2BC3cXhtlSmurnK, PID: 20951352
    • Probst AV, Okamoto I, Casanova M, El Marjou F, Le Baccon P, Almouzni G (2010) A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development. Dev Cell 19:625–638
    • (2010) Dev Cell , vol.19 , pp. 625-638
    • Probst, A.V.1    Okamoto, I.2    Casanova, M.3    El Marjou, F.4    Le Baccon, P.5    Almouzni, G.6
  • 24
    • 23944457696 scopus 로고    scopus 로고
    • Human subtelomere structure and variation
    • COI: 1:CAS:528:DC%2BD2MXovVKkurg%3D, PID: 16132815
    • Riethman H, Ambrosini A, Paul S (2005) Human subtelomere structure and variation. Chromosome Res 13:505–515
    • (2005) Chromosome Res , vol.13 , pp. 505-515
    • Riethman, H.1    Ambrosini, A.2    Paul, S.3
  • 25
    • 84861222896 scopus 로고    scopus 로고
    • The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis
    • COI: 1:CAS:528:DC%2BC38Xms12ktr0%3D, PID: 22546690
    • Roeszler KN, Itman C, Sinclair AH, Smith CA (2012) The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis. Dev Biol 366:317–326
    • (2012) Dev Biol , vol.366 , pp. 317-326
    • Roeszler, K.N.1    Itman, C.2    Sinclair, A.H.3    Smith, C.A.4
  • 26
    • 0029240544 scopus 로고
    • Transcripts from opposite strands of gamma satellite DNA are differentially expressed during mouse development
    • COI: 1:CAS:528:DyaK2MXls1Cks7c%3D, PID: 7767009
    • Rudert F, Bronner S, Garnier JM, Dolle P (1995) Transcripts from opposite strands of gamma satellite DNA are differentially expressed during mouse development. Mamm Genome 6:76–83
    • (1995) Mamm Genome , vol.6 , pp. 76-83
    • Rudert, F.1    Bronner, S.2    Garnier, J.M.3    Dolle, P.4
  • 27
    • 78649267074 scopus 로고    scopus 로고
    • Crystal structures of RNase H2 in complex with nucleic acid reveal the mechanism of RNA-DNA junction recognition and cleavage
    • COI: 1:CAS:528:DC%2BC3cXhsVGnurzF, PID: 21095591
    • Rychlik MP, Chon H, Cerritelli SM, Klimek P, Crouch RJ, Nowotny M (2010) Crystal structures of RNase H2 in complex with nucleic acid reveal the mechanism of RNA-DNA junction recognition and cleavage. Mol Cell 40:658–670
    • (2010) Mol Cell , vol.40 , pp. 658-670
    • Rychlik, M.P.1    Chon, H.2    Cerritelli, S.M.3    Klimek, P.4    Crouch, R.J.5    Nowotny, M.6
  • 28
    • 38849111756 scopus 로고    scopus 로고
    • Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II
    • COI: 1:CAS:528:DC%2BD1cXhs1Kiur0%3D, PID: 18157120
    • Schoeftner S, Blasco MA (2008) Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II. Nat Cell Biol 10:228–236
    • (2008) Nat Cell Biol , vol.10 , pp. 228-236
    • Schoeftner, S.1    Blasco, M.A.2
  • 29
    • 85044708445 scopus 로고    scopus 로고
    • Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    • COI: 1:CAS:528:DC%2BC38XptFelsrg%3D, PID: 22418847
    • Shao P, Liaoa J-Y, Guana D-G et al (2012) Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation. RNA Biol 9:212–227
    • (2012) RNA Biol , vol.9 , pp. 212-227
    • Shao, P.1    Liaoa, J.-Y.2    Guana, D.-G.3
  • 30
    • 34548291568 scopus 로고    scopus 로고
    • The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
    • COI: 1:CAS:528:DC%2BD2sXhtVelsrnL, PID: 17623775
    • Sone M, Hayashi T, Tarui H, Agata K, Takeichi M, Nakagawa S (2007) The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J Cell Sci 120:2498–2506
    • (2007) J Cell Sci , vol.120 , pp. 2498-2506
    • Sone, M.1    Hayashi, T.2    Tarui, H.3    Agata, K.4    Takeichi, M.5    Nakagawa, S.6
  • 31
    • 0035064587 scopus 로고    scopus 로고
    • Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus
    • COI: 1:CAS:528:DC%2BD3MXislaqtbo%3D, PID: 11321370
    • Teranishi M, Shimada Y, Hori T et al (2001) Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus. Chromosome Res 9:147–165
    • (2001) Chromosome Res , vol.9 , pp. 147-165
    • Teranishi, M.1    Shimada, Y.2    Hori, T.3
  • 32
    • 84968779318 scopus 로고    scopus 로고
    • Non-coding RNA derived from a conservative subtelomeric tandem repeat in chicken and Japanese quail somatic cells
    • Trofimova I, Popova D, Vasilevskaya E, Krasikova A (2014) Non-coding RNA derived from a conservative subtelomeric tandem repeat in chicken and Japanese quail somatic cells. Mol Cytogenet 7:1–13
    • (2014) Mol Cytogenet , vol.7 , pp. 1-13
    • Trofimova, I.1    Popova, D.2    Vasilevskaya, E.3    Krasikova, A.4
  • 33
    • 27844475695 scopus 로고    scopus 로고
    • Functional elements residing within satellite DNAs
    • COI: 1:CAS:528:DC%2BD2MXhtFKlsLvF, PID: 16264428
    • Ugarkovic D (2005) Functional elements residing within satellite DNAs. EMBO Rep 6:1035–1039
    • (2005) EMBO Rep , vol.6 , pp. 1035-1039
    • Ugarkovic, D.1
  • 35
    • 19944432437 scopus 로고    scopus 로고
    • The repetitive landscape of the chicken genome
    • PID: 15256510
    • Wicker T, Robertson JS, Schulze SR et al (2005) The repetitive landscape of the chicken genome. Genome Res 15:126–136
    • (2005) Genome Res , vol.15 , pp. 126-136
    • Wicker, T.1    Robertson, J.S.2    Schulze, S.R.3
  • 36
    • 78149321674 scopus 로고    scopus 로고
    • Polypurine-repeat-containing RNAs: a novel class of long non-coding RNA in mammalian cells
    • COI: 1:CAS:528:DC%2BC3cXhsFCit7nL, PID: 20940252
    • Zheng R, Shen Z, Tripathi V et al (2010) Polypurine-repeat-containing RNAs: a novel class of long non-coding RNA in mammalian cells. J Cell Sci 123:3734–3744
    • (2010) J Cell Sci , vol.123 , pp. 3734-3744
    • Zheng, R.1    Shen, Z.2    Tripathi, V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.