메뉴 건너뛰기




Volumn 10, Issue 9, 2015, Pages

Whose gene is it anyway? the effect of preparation purity on neutrophil transcriptome studies

Author keywords

[No Author keywords available]

Indexed keywords

BETA7 INTEGRIN; CD163 ANTIGEN; CD2 ANTIGEN; CD3 ANTIGEN; CD36 ANTIGEN; CD5 ANTIGEN; CD8 ANTIGEN; CD9 ANTIGEN; GRANULOCYTE COLONY STIMULATING FACTOR; INDOLEAMINE 2,3 DIOXYGENASE; INTERLEUKIN 5 RECEPTOR ALPHA; MONOCYTE CHEMOTACTIC PROTEIN 1; TRANSCRIPTOME; TUMOR NECROSIS FACTOR ALPHA; CHEMOKINE; MESSENGER RNA; MICROSPHERE;

EID: 84946962536     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0138982     Document Type: Article
Times cited : (37)

References (28)
  • 1
    • 79960829290 scopus 로고    scopus 로고
    • Neutrophils in the activation and regulation of innate and adaptive immunity
    • PMID: 21785456
    • Mantovani A, Cassatella Ma, Costantini C, Jaillon S. Neutrophils in the activation and regulation of innate and adaptive immunity. Nat Rev Immunol. 2011; 11: 519-531. doi: 10.1038/nri3024 PMID: 21785456
    • (2011) Nat Rev Immunol , vol.11 , pp. 519-531
    • Mantovani, A.1    Ma, C.2    Costantini, C.3    Jaillon, S.4
  • 3
    • 84921813332 scopus 로고    scopus 로고
    • The multifactorial role of neutrophils in rheumatoid arthritis
    • PMID: 24914698
    • Wright HL, Moots RJ, Edwards SW. The multifactorial role of neutrophils in rheumatoid arthritis. Nat Rev Rheumatol. 2014; 10: 593-601. doi: 10.1038/nrrheum.2014.80 PMID: 24914698
    • (2014) Nat Rev Rheumatol , vol.10 , pp. 593-601
    • Wright, H.L.1    Moots, R.J.2    Edwards, S.W.3
  • 4
    • 79952015453 scopus 로고    scopus 로고
    • Rapid immunomagnetic negative enrichment of neutrophil granulocytes from murine bone marrow for functional studies in vitro and in vivo
    • PMID: 21383835
    • Hasenberg M, Köhler A, Bonifatius S, Borucki K, Riek-Burchardt M, Achilles J et al. Rapid immunomagnetic negative enrichment of neutrophil granulocytes from murine bone marrow for functional studies in vitro and in vivo. PloS One. 2011; 6: e17314. doi: 10.1371/journal.pone.0017314 PMID: 21383835
    • (2011) PloS One , vol.6
    • Hasenberg, M.1    Köhler, A.2    Bonifatius, S.3    Borucki, K.4    Riek-Burchardt, M.5    Achilles, J.6
  • 5
    • 84920506864 scopus 로고    scopus 로고
    • Neutrophil transcriptional profile changes during transit from bone marrow to sites of inflammation
    • PMID: 24909740
    • Lakschevitz FS, Visser MB, Sun C, Glogauer M. Neutrophil transcriptional profile changes during transit from bone marrow to sites of inflammation. Cell Mol Immunol. 2014; 12: 53-65. doi: 10.1038/cmi.2014. 37 PMID: 24909740
    • (2014) Cell Mol Immunol , vol.12 , pp. 53-65
    • Lakschevitz, F.S.1    Visser, M.B.2    Sun, C.3    Glogauer, M.4
  • 6
    • 84863538523 scopus 로고    scopus 로고
    • Impact of human granulocyte and monocyte isolation procedures on functional studies
    • PMID: 22552601
    • Zhou L, Somasundaram R, Nederhof RF, Dijkstra G, Faber KN, Peppelenbosch MP et al. Impact of human granulocyte and monocyte isolation procedures on functional studies. Clin Vaccine immunol. 2012; 19: 1065-1074. doi: 10.1128/CVI.05715-11 PMID: 22552601
    • (2012) Clin Vaccine Immunol , vol.19 , pp. 1065-1074
    • Zhou, L.1    Somasundaram, R.2    Nederhof, R.F.3    Dijkstra, G.4    Faber, K.N.5    Peppelenbosch, M.P.6
  • 7
    • 0036569658 scopus 로고    scopus 로고
    • Toll-like receptor (TLR)2 and TLR4 in human peripheral blood granulocytes: A critical role for monocytes in leukocyte lipopolysaccharide responses
    • PMID: 11971020
    • Sabroe I, Jones EC, Usher LR, Whyte MK, Dower SK. Toll-like receptor (TLR)2 and TLR4 in human peripheral blood granulocytes: a critical role for monocytes in leukocyte lipopolysaccharide responses. J Immunol. 2002; 168: 4701-4710. PMID: 11971020
    • (2002) J Immunol , vol.168 , pp. 4701-4710
    • Sabroe, I.1    Jones, E.C.2    Usher, L.R.3    Whyte, M.K.4    Dower, S.K.5
  • 9
    • 77954065951 scopus 로고    scopus 로고
    • Validation of the efficacy of a practical method for neutrophils isolation from peripheral blood
    • PMID: 20499533
    • Degel J, Shokrani M. Validation of the efficacy of a practical method for neutrophils isolation from peripheral blood. Clin Lab Sci. 2010; 23: 94-98. PMID: 20499533
    • (2010) Clin Lab Sci , vol.23 , pp. 94-98
    • Degel, J.1    Shokrani, M.2
  • 10
    • 78651274291 scopus 로고    scopus 로고
    • Isolation of granulocytes: Which transcriptome do we analyse-neutrophils or eosinophils?
    • Stejskal S, Koutna I, Rucka Z. Isolation of granulocytes: which transcriptome do we analyse-neutrophils or eosinophils? Folia Biol. 2010; 56: 252-255.
    • (2010) Folia Biol , vol.56 , pp. 252-255
    • Stejskal, S.1    Koutna, I.2    Rucka, Z.3
  • 11
    • 84874599961 scopus 로고    scopus 로고
    • RNA-Seq Reveals Activation of Both Common and Cytokine-Specific Pathways following Neutrophil Priming
    • PMID: 23554905
    • Wright HL, Thomas HB, Moots RJ, Edwards SW. RNA-Seq Reveals Activation of Both Common and Cytokine-Specific Pathways following Neutrophil Priming. PLoS One. 2013; 8: e58598. doi: 10.1371/ journal.pone.0058598 PMID: 23554905
    • (2013) PLoS One , vol.8
    • Wright, H.L.1    Thomas, H.B.2    Moots, R.J.3    Edwards, S.W.4
  • 12
    • 84928728998 scopus 로고    scopus 로고
    • Interferon gene expression signature in rheumatoid arthritis neutrophils correlates with a good response to TNFi therapy
    • Wright HL, Thomas HB, Moots RJ, Edwards SW. Interferon gene expression signature in rheumatoid arthritis neutrophils correlates with a good response to TNFi therapy. Rheumatology (Oxford). 2015; 54: 188-193.
    • (2015) Rheumatology (Oxford) , vol.54 , pp. 188-193
    • Wright, H.L.1    Thomas, H.B.2    Moots, R.J.3    Edwards, S.W.4
  • 13
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • PMID: 19289445
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009; 25: 1105-1111. doi: 10.1093/bioinformatics/btp120 PMID: 19289445
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 14
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • PMID: 22383036
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012; 7: 562-578. doi: 10.1038/nprot.2012.016 PMID: 22383036
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 15
    • 74549125753 scopus 로고    scopus 로고
    • An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
    • PMID: 20011106
    • Ramsköld D, Wang ET, Burge CB, Sandberg R, Ramsko D. An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PLoS Comput Biol. 2009; 5: e1000598. doi: 10.1371/journal.pcbi.1000598 PMID: 20011106
    • (2009) PLoS Comput Biol , vol.5
    • Ramsköld, D.1    Wang, E.T.2    Burge, C.B.3    Sandberg, R.4    Ramsko, D.5
  • 17
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • PMID: 11752295
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002; 30: 207-210. PMID: 11752295
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 18
    • 0019489784 scopus 로고
    • Eosinophil autofluorescence and its use in isolation and analysis of human eosinophils using flow microfluorometry
    • PMID: 7225570
    • Weil GJ, Chused TM. Eosinophil autofluorescence and its use in isolation and analysis of human eosinophils using flow microfluorometry. Blood. 1981; 57: 1099-1104. PMID: 7225570
    • (1981) Blood , vol.57 , pp. 1099-1104
    • Weil, G.J.1    Chused, T.M.2
  • 19
    • 0031466531 scopus 로고    scopus 로고
    • Identification of eosinophils in lysed whole blood using side scatter and CD16 negativity
    • PMID: 9440823
    • Gopinath R, Nutman TB. Identification of eosinophils in lysed whole blood using side scatter and CD16 negativity. Cytometry. 1997; 30: 313-316. PMID: 9440823
    • (1997) Cytometry , vol.30 , pp. 313-316
    • Gopinath, R.1    Nutman, T.B.2
  • 20
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • PMID: 20436464
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010; 28: 511-515. doi: 10.1038/nbt.1621 PMID: 20436464
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    Van Baren, M.J.6
  • 21
    • 75649148842 scopus 로고    scopus 로고
    • Evidence for a cross-talk between human neutrophils and Th17 cells
    • PMID: 19890092
    • Pelletier M, Maggi L, Micheletti A, Lazzeri E, Tamassia N, Constantini C et al. Evidence for a cross-talk between human neutrophils and Th17 cells. Blood. 2010; 115: 335-343. doi: 10.1182/blood-2009-04- 216085 PMID: 19890092
    • (2010) Blood , vol.115 , pp. 335-343
    • Pelletier, M.1    Maggi, L.2    Micheletti, A.3    Lazzeri, E.4    Tamassia, N.5    Constantini, C.6
  • 22
    • 84912080505 scopus 로고    scopus 로고
    • A lack of confirmation with alternative assays questions the validity of IL-17A expression in human neutrophils using immunohistochemistry
    • PMID: 25445614
    • Tamarozzi F, Wright HL, Thomas HB, Edwards SW, Taylor MJ. A lack of confirmation with alternative assays questions the validity of IL-17A expression in human neutrophils using immunohistochemistry. Immunol Lett. 2014; 162: 194-198. doi: 10.1016/j.imlet.2014.10.025 PMID: 25445614
    • (2014) Immunol Lett , vol.162 , pp. 194-198
    • Tamarozzi, F.1    Wright, H.L.2    Thomas, H.B.3    Edwards, S.W.4    Taylor, M.J.5
  • 23
    • 80051553577 scopus 로고    scopus 로고
    • Granulocyte/macrophage colony-stimulating factor causes a paradoxical increase in the BH3-only pro-apoptotic protein Bim in human neutrophils
    • Cowburn AS, Summers C, Dunmore BJ, Farahi N, Hayhoe RP, Print CG et al. Granulocyte/macrophage colony-stimulating factor causes a paradoxical increase in the BH3-only pro-apoptotic protein Bim in human neutrophils. Am J Resp Cell Mol Biol. 2011; 44: 879-887.
    • (2011) Am J Resp Cell Mol Biol , vol.44 , pp. 879-887
    • Cowburn, A.S.1    Summers, C.2    Dunmore, B.J.3    Farahi, N.4    Hayhoe, R.P.5    Print, C.G.6
  • 24
    • 79251586522 scopus 로고    scopus 로고
    • Effective caspase inhibition blocks neutrophil apoptosis and reveals Mcl-1 as both a regulator and a target of neutrophil caspase activation
    • PMID: 21253591
    • Wardle DJ, Burgon J, Sabroe I, Bingle CD, Whyte MKB, Renshaw SA. Effective caspase inhibition blocks neutrophil apoptosis and reveals Mcl-1 as both a regulator and a target of neutrophil caspase activation. PloS One. 2011; 6: e15768. doi: 10.1371/journal.pone.0015768 PMID: 21253591
    • (2011) PloS One , vol.6
    • Wardle, D.J.1    Burgon, J.2    Sabroe, I.3    Bingle, C.D.4    Whyte, M.K.B.5    Renshaw, S.A.6
  • 25
    • 84874223081 scopus 로고    scopus 로고
    • Cutting edge: An inactive chromatin configuration at the IL-10 locus in human neutrophils
    • PMID: 23355741
    • Tamassia N, Zimmermann M, Castellucci M, Ostuni R, Bruderek K, Schilling B et al. Cutting edge: an inactive chromatin configuration at the IL-10 locus in human neutrophils. J Immunol. 2013; 190: 1921-1925. doi: 10.4049/jimmunol.1203022 PMID: 23355741
    • (2013) J Immunol , vol.190 , pp. 1921-1925
    • Tamassia, N.1    Zimmermann, M.2    Castellucci, M.3    Ostuni, R.4    Bruderek, K.5    Schilling, B.6
  • 26
    • 0035406171 scopus 로고    scopus 로고
    • CD9 and HLA-DR expression by crevicular epithelial cells and polymorphonuclear neutrophils in periodontal disease
    • PMID: 11422586
    • Bisson-Boutelliez C, Miller N, Demarch D, Bene MC. CD9 and HLA-DR expression by crevicular epithelial cells and polymorphonuclear neutrophils in periodontal disease. J Clin Periodontol. 2001; 28: 650-656. PMID: 11422586
    • (2001) J Clin Periodontol , vol.28 , pp. 650-656
    • Bisson-Boutelliez, C.1    Miller, N.2    Demarch, D.3    Bene, M.C.4
  • 28
    • 84923108417 scopus 로고    scopus 로고
    • Chromatin remodelling and autocrine TNFalpha are required for optimal interleukin-6 expression in activated human neutrophils
    • PMID: 25616107
    • Zimmermann M, Aguilera FB, Castellucci M, Rossato M, Costa S, Lunardi C. Chromatin remodelling and autocrine TNFalpha are required for optimal interleukin-6 expression in activated human neutrophils. Nat Commun. 2015; 6: 6061. doi: 10.1038/ncomms7061 PMID: 25616107
    • (2015) Nat Commun , vol.6 , pp. 6061
    • Zimmermann, M.1    Aguilera, F.B.2    Castellucci, M.3    Rossato, M.4    Costa, S.5    Lunardi, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.