-
1
-
-
77956534729
-
SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation
-
Ahlfors, H., A. Limaye, L.L. Elo, S. Tuomela, M. Burute, K.V. Gottimukkala, D. Notani, O. Rasool, S. Galande, and R. Lahesmaa. 2010. SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation. Blood. 116:1443-1453. http://dx.doi.org/10.1182/ blood-2009-11-252205.
-
(2010)
Blood
, vol.116
, pp. 1443-1453
-
-
Ahlfors, H.1
Limaye, A.2
Elo, L.L.3
Tuomela, S.4
Burute, M.5
Gottimukkala, K.V.6
Notani, D.7
Rasool, O.8
Galande, S.9
Lahesmaa, R.10
-
2
-
-
0034161939
-
The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development
-
Alvarez, J.D., D.H. Yasui, H. Niida, T. Joh, D.Y. Loh, and T. Kohwi-Shigematsu. 2000. The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development. Genes Dev. 14:521-535.
-
(2000)
Genes Dev
, vol.14
, pp. 521-535
-
-
Alvarez, J.D.1
Yasui, D.H.2
Niida, H.3
Joh, T.4
Loh, D.Y.5
Kohwi-Shigematsu, T.6
-
3
-
-
84863012799
-
SATB1 ablation alters temporal expression of immediate early genes and reduces dendritic spine density during postnatal brain development
-
Balamotis, M.A., N. Tamberg, Y.J. Woo, J. Li, B. Davy, T. Kohwi-Shigematsu, and Y. Kohwi. 2012. SATB1 ablation alters temporal expression of immediate early genes and reduces dendritic spine density during postnatal brain development. Mol. Cell. Biol. 32:333-347. http://dx.doi.org/10.1128/ MCB. 05917-11.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 333-347
-
-
Balamotis, M.A.1
Tamberg, N.2
Woo, Y.J.3
Li, J.4
Davy, B.5
Kohwi-Shigematsu, T.6
Kohwi, Y.7
-
4
-
-
0033812835
-
Generation of an improved luciferase reporter gene plasmid that employs a novel mechanism for high-copy replication
-
Bert, A.G., J. Burrows, C.S. Osborne, and P.N. Cockerill. 2000. Generation of an improved luciferase reporter gene plasmid that employs a novel mechanism for high-copy replication. Plasmid. 44:173-182. http://dx.doi.org/10 .1006/plas.2000.1474.
-
(2000)
Plasmid
, vol.44
, pp. 173-182
-
-
Bert, A.G.1
Burrows, J.2
Osborne, C.S.3
Cockerill, P.N.4
-
5
-
-
80052023563
-
Repression of the genome organizer SATB1 in regulatory T cells is required for suppressive function and inhibition of effector differentiation
-
Beyer, M., Y. Thabet, R.U. Müller, T. Sadlon, S. Classen, K. Lahl, S. Basu, X. Zhou, S.L. Bailey-Bucktrout, W. Krebs, et al. 2011. Repression of the genome organizer SATB1 in regulatory T cells is required for suppressive function and inhibition of effector differentiation. Nat. Immunol. 12: 898-907. http://dx.doi.org/10.1038/ni.2084.
-
(2011)
Nat. Immunol.
, vol.12
, pp. 898-907
-
-
Beyer, M.1
Thabet, Y.2
Müller, R.U.3
Sadlon, T.4
Classen, S.5
Lahl, K.6
Basu, S.7
Zhou, X.8
Bailey-Bucktrout, S.L.9
Krebs, W.10
-
6
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
Bulger, M., and M. Groudine. 2011. Functional and mechanistic diversity of distal transcription enhancers. Cell. 144:327-339. http://dx.doi.org/10 .1016/j.cell.2011.01.024.
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
7
-
-
0038369968
-
Tissue-specific nuclear architecture and gene expression regulated by SATB1
-
Cai, S., H.J. Han, and T. Kohwi-Shigematsu. 2003. Tissue-specific nuclear architecture and gene expression regulated by SATB1. Nat. Genet. 34:42-51. http://dx.doi.org/10.1038/ng1146.
-
(2003)
Nat. Genet.
, vol.34
, pp. 42-51
-
-
Cai, S.1
Han, H.J.2
Kohwi-Shigematsu, T.3
-
8
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
Cai, S., C.C. Lee, and T. Kohwi-Shigematsu. 2006. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet. 38:1278-1288. http://dx.doi.org/10.1038/ ng1913.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
9
-
-
84876836223
-
Modification of enhancer chromatin: what, how, and why? Mol
-
Calo, E., and J. Wysocka. 2013. Modification of enhancer chromatin: what, how, and why? Mol. Cell. 49:825-837. http://dx.doi.org/10.1016/j.molcel .2013.01.038.
-
(2013)
Cell
, vol.49
, pp. 825-837
-
-
Calo, E.1
Wysocka, J.2
-
10
-
-
84881243248
-
Real-time dynamics of RNA polymerase II clustering in live human cells
-
Cisse, I.I., I. Izeddin, S.Z. Causse, L. Boudarene, A. Senecal, L. Muresan, C. Dugast-Darzacq, B. Hajj, M. Dahan, and X. Darzacq. 2013. Real-time dynamics of RNA polymerase II clustering in live human cells. Science. 341:664-667. http://dx.doi.org/10.1126/science.1239053.
-
(2013)
Science
, vol.341
, pp. 664-667
-
-
Cisse, I.I.1
Izeddin, I.2
Causse, S.Z.3
Boudarene, L.4
Senecal, A.5
Muresan, L.6
Dugast-Darzacq, C.7
Hajj, B.8
Dahan, M.9
Darzacq, X.10
-
11
-
-
0033546210
-
The organization of replication and transcription
-
Cook, P.R. 1999. The organization of replication and transcription. Science. 284:1790-1795. http://dx.doi.org/10.1126/science.284.5421.1790.
-
(1999)
Science
, vol.284
, pp. 1790-1795
-
-
Cook, P.R.1
-
12
-
-
0037332003
-
Transgenic mice with hematopoietic and lymphoid specific expression of Cre
-
de Boer, J., A. Williams, G. Skavdis, N. Harker, M. Coles, M. Tolaini, T. Norton, K. Williams, K. Roderick, A.J. Potocnik, and D. Kioussis. 2003. Transgenic mice with hematopoietic and lymphoid specific expression of Cre. Eur. J. Immunol. 33:314-325. http://dx.doi.org/10.1002/immu.200310005
-
(2003)
Eur. J. Immunol.
, vol.33
, pp. 314-325
-
-
de Boer, J.1
Williams, A.2
Skavdis, G.3
Harker, N.4
Coles, M.5
Tolaini, M.6
Norton, T.7
Williams, K.8
Roderick, K.9
Potocnik, A.J.10
Kioussis, D.11
-
13
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., K. Rippe, M. Dekker, and N. Kleckner. 2002. Capturing chromosome conformation. Science. 295:1306-1311. http://dx.doi.org/10.1126/ science.1067799.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
14
-
-
0026758357
-
A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition
-
Dickinson, L.A., T. Joh, Y. Kohwi, and T. Kohwi-Shigematsu. 1992. A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell. 70:631-645. http://dx.doi.org/10.1016/0092-8674(92)90432-C.
-
(1992)
Cell
, vol.70
, pp. 631-645
-
-
Dickinson, L.A.1
Joh, T.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
15
-
-
0032055166
-
Systemic overexpression of BCL-2 in the hematopoietic system protects transgenic mice from the consequences of lethal irradiation
-
Domen, J., K.L. Gandy, and I.L. Weissman. 1998. Systemic overexpression of BCL-2 in the hematopoietic system protects transgenic mice from the consequences of lethal irradiation. Blood. 91:2272-2282.
-
(1998)
Blood
, vol.91
, pp. 2272-2282
-
-
Domen, J.1
Gandy, K.L.2
Weissman, I.L.3
-
16
-
-
80053956232
-
p63 regulates SATB1 to control tissue-specific chromatin remodeling during development of the epidermis
-
Fessing, M.Y., A.N. Mardaryev, M.R. Gdula, A.A. Sharov, T.Y. Sharova, V. Rapisarda, K.B. Gordon, A.D. Smorodchenko, K. Poterlowicz, G. Ferone, et al. 2011. p63 regulates SATB1 to control tissue-specific chromatin remodeling during development of the epidermis. J. Cell Biol. 194: 825-839. http://dx.doi.org/10.1083/jcb.201101148.
-
(2011)
J. Cell Biol.
, vol.194
, pp. 825-839
-
-
Fessing, M.Y.1
Mardaryev, A.N.2
Gdula, M.R.3
Sharov, A.A.4
Sharova, T.Y.5
Rapisarda, V.6
Gordon, K.B.7
Smorodchenko, A.D.8
Poterlowicz, K.9
Ferone, G.10
-
17
-
-
84876276025
-
In vivo live imaging of RNA polymerase II transcription factories in primary cells
-
Ghamari, A., M.P. van de Corput, S. Thongjuea, W.A. van Cappellen, W. van Ijcken, J. van Haren, E. Soler, D. Eick, B. Lenhard, and F.G. Grosveld. 2013. In vivo live imaging of RNA polymerase II transcription factories in primary cells. Genes Dev. 27:767-777. http://dx.doi.org/10 .1101/gad.216200.113.
-
(2013)
Genes Dev
, vol.27
, pp. 767-777
-
-
Ghamari, A.1
van de Corput, M.P.2
Thongjuea, S.3
van Cappellen, W.A.4
van Ijcken, W.5
van Haren, J.6
Soler, E.7
Eick, D.8
Lenhard, B.9
Grosveld, F.G.10
-
18
-
-
84876838711
-
The hierarchy of the 3D genome
-
Gibcus, J.H., and J. Dekker. 2013. The hierarchy of the 3D genome. Mol. Cell. 49:773-782. http://dx.doi.org/10.1016/j.molcel.2013.02.011.
-
(2013)
Mol. Cell.
, vol.49
, pp. 773-782
-
-
Gibcus, J.H.1
Dekker, J.2
-
19
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
Giresi, P.G., J. Kim, R.M. McDaniell, V.R. Iyer, and J.D. Lieb. 2007. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 17:877-885. http://dx.doi.org/10.1101/gr.5533506.
-
(2007)
Genome Res
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
20
-
-
0035999828
-
Regulation of the TCRalpha repertoire by the survival window of CD4(+)CD8(+) thymocytes
-
Guo, J., A. Hawwari, H. Li, Z. Sun, S.K. Mahanta, D.R. Littman, M.S. Krangel, and Y.W. He. 2002. Regulation of the TCRalpha repertoire by the survival window of CD4(+)CD8(+) thymocytes. Nat. Immunol. 3:469-476. http://dx.doi.org/10.1038/ni791.
-
(2002)
Nat. Immunol.
, vol.3
, pp. 469-476
-
-
Guo, J.1
Hawwari, A.2
Li, H.3
Sun, Z.4
Mahanta, S.K.5
Littman, D.R.6
Krangel, M.S.7
He, Y.W.8
-
21
-
-
34548565667
-
Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
-
Hagège, H., P. Klous, C. Braem, E. Splinter, J. Dekker, G. Cathala, W. de Laat, and T. Forné. 2007. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat. Protoc. 2:1722-1733. http://dx.doi .org/10.1038/nprot.2007.243.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1722-1733
-
-
Hagège, H.1
Klous, P.2
Braem, C.3
Splinter, E.4
Dekker, J.5
Cathala, G.6
de Laat, W.7
Forné, T.8
-
22
-
-
40749094918
-
SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
-
Han, H.J., J. Russo, Y. Kohwi, and T. Kohwi-Shigematsu. 2008. SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature. 452:187-193. http://dx.doi.org/10.1038/nature06781.
-
(2008)
Nature
, vol.452
, pp. 187-193
-
-
Han, H.J.1
Russo, J.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
23
-
-
80052655777
-
Long-distance regulation of fetal V(δ) gene segment TRDV4 by the Tcrd enhancer
-
Hao, B., and M.S. Krangel. 2011. Long-distance regulation of fetal V(δ) gene segment TRDV4 by the Tcrd enhancer. J. Immunol. 187:2484-2491. http://dx.doi.org/10.4049/jimmunol.1100468.
-
(2011)
J. Immunol.
, vol.187
, pp. 2484-2491
-
-
Hao, B.1
Krangel, M.S.2
-
24
-
-
18244406271
-
Regulation of T cell receptor α gene assembly by a complex hierarchy of germline Jalpha promoters
-
Hawwari, A., C. Bock, and M.S. Krangel. 2005. Regulation of T cell receptor α gene assembly by a complex hierarchy of germline Jalpha promoters. Nat. Immunol. 6:481-489. http://dx.doi.org/10.1038/ni1189.
-
(2005)
Nat. Immunol.
, vol.6
, pp. 481-489
-
-
Hawwari, A.1
Bock, C.2
Krangel, M.S.3
-
25
-
-
0038783576
-
A conserved transcriptional enhancer regulates RAG gene expression in developing B cells
-
Hsu, L.Y., J. Lauring, H.E. Liang, S. Greenbaum, D. Cado, Y. Zhuang, and M.S. Schlissel. 2003. A conserved transcriptional enhancer regulates RAG gene expression in developing B cells. Immunity. 19:105-117. http://dx .doi.org/10.1016/S1074-7613(03)00181-X.
-
(2003)
Immunity
, vol.19
, pp. 105-117
-
-
Hsu, L.Y.1
Lauring, J.2
Liang, H.E.3
Greenbaum, S.4
Cado, D.5
Zhuang, Y.6
Schlissel, M.S.7
-
26
-
-
26844507374
-
Allele-specific regulation of TCR β variable gene segment chromatin structure
-
Jackson, A.M., and M.S. Krangel. 2005. Allele-specific regulation of TCR β variable gene segment chromatin structure. J. Immunol. 175:5186-5191. http://dx.doi.org/10.4049/jimmunol.175.8.5186.
-
(2005)
J. Immunol.
, vol.175
, pp. 5186-5191
-
-
Jackson, A.M.1
Krangel, M.S.2
-
27
-
-
13444268486
-
Regulation of T cell receptor β allelic exclusion at a level beyond accessibility
-
Jackson, A., H.D. Kondilis, B. Khor, B.P. Sleckman, and M.S. Krangel. 2005. Regulation of T cell receptor β allelic exclusion at a level beyond accessibility. Nat. Immunol. 6:189-197. http://dx.doi.org/10.1038/ni1157.
-
(2005)
Nat. Immunol.
, vol.6
, pp. 189-197
-
-
Jackson, A.1
Kondilis, H.D.2
Khor, B.3
Sleckman, B.P.4
Krangel, M.S.5
-
28
-
-
68049086918
-
Chromatin architecture and the generation of antigen receptor diversity
-
Jhunjhunwala, S., M.C. van Zelm, M.M. Peak, and C. Murre. 2009. Chromatin architecture and the generation of antigen receptor diversity. Cell. 138:435-448. http://dx.doi.org/10.1016/j.cell.2009.07.016.
-
(2009)
Cell
, vol.138
, pp. 435-448
-
-
Jhunjhunwala, S.1
van Zelm, M.C.2
Peak, M.M.3
Murre, C.4
-
29
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim, T.K., M. Hemberg, J.M. Gray, A.M. Costa, D.M. Bear, J. Wu, D.A. Harmin, M. Laptewicz, K. Barbara-Haley, S. Kuersten, et al. 2010. Widespread transcription at neuronal activity-regulated enhancers. Nature. 465:182-187. http://dx.doi.org/10.1038/nature09033.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
30
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissuespecific enhancers and promoters
-
Koch, F., R. Fenouil, M. Gut, P. Cauchy, T.K. Albert, J. Zacarias-Cabeza, S. Spicuglia, A.L. de la Chapelle, M. Heidemann, C. Hintermair, et al. 2011. Transcription initiation platforms and GTF recruitment at tissuespecific enhancers and promoters. Nat. Struct. Mol. Biol. 18:956-963. http://dx.doi.org/10.1038/nsmb.2085.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 956-963
-
-
Koch, F.1
Fenouil, R.2
Gut, M.3
Cauchy, P.4
Albert, T.K.5
Zacarias-Cabeza, J.6
Spicuglia, S.7
de la Chapelle, A.L.8
Heidemann, M.9
Hintermair, C.10
-
31
-
-
84875586415
-
Genome organizing function of SATB1 in tumor progression
-
Kohwi-Shigematsu, T., K. Poterlowicz, E. Ordinario, H.J. Han, V.A. Botchkarev, and Y. Kohwi. 2013. Genome organizing function of SATB1 in tumor progression. Semin. Cancer Biol. 23:72-79. http://dx.doi.org/ 10.1016/j.semcancer.2012.06.009.
-
(2013)
Semin. Cancer Biol.
, vol.23
, pp. 72-79
-
-
Kohwi-Shigematsu, T.1
Poterlowicz, K.2
Ordinario, E.3
Han, H.J.4
Botchkarev, V.A.5
Kohwi, Y.6
-
32
-
-
65249145203
-
Mechanics of T cell receptor gene rearrangement
-
Krangel, M.S. 2009. Mechanics of T cell receptor gene rearrangement. Curr. Opin. Immunol. 21:133-139. http://dx.doi.org/10.1016/j.coi.2009.03.009.
-
(2009)
Curr. Opin. Immunol.
, vol.21
, pp. 133-139
-
-
Krangel, M.S.1
-
33
-
-
33646490450
-
Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo
-
Kumar, P.P., P.K. Purbey, C.K. Sinha, D. Notani, A. Limaye, R.S. Jayani, and S. Galande. 2006. Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo. Mol. Cell. 22:231-243. http://dx.doi.org/10.1016/j.molcel.2006.03.010.
-
(2006)
Mol. Cell.
, vol.22
, pp. 231-243
-
-
Kumar, P.P.1
Purbey, P.K.2
Sinha, C.K.3
Notani, D.4
Limaye, A.5
Jayani, R.S.6
Galande, S.7
-
34
-
-
33845871732
-
Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus
-
Kumar, P.P., O. Bischof, P.K. Purbey, D. Notani, H. Urlaub, A. Dejean, and S. Galande. 2007. Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nat. Cell Biol. 9:45-56. http://dx.doi.org/10.1038/ ncb1516.
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 45-56
-
-
Kumar, P.P.1
Bischof, O.2
Purbey, P.K.3
Notani, D.4
Urlaub, H.5
Dejean, A.6
Galande, S.7
-
35
-
-
65249104895
-
Mechanisms controlling expression of the RAG locus during lymphocyte development
-
Kuo, T.C., and M.S. Schlissel. 2009. Mechanisms controlling expression of the RAG locus during lymphocyte development. Curr. Opin. Immunol. 21:173-178. http://dx.doi.org/10.1016/j.coi.2009.03.008.
-
(2009)
Curr. Opin. Immunol.
, vol.21
, pp. 173-178
-
-
Kuo, T.C.1
Schlissel, M.S.2
-
36
-
-
84879695128
-
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
-
Li, W., D. Notani, Q. Ma, B. Tanasa, E. Nunez, A.Y. Chen, D. Merkurjev, J. Zhang, K. Ohgi, X. Song, et al. 2013. Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature. 498:516-520. http://dx.doi.org/10.1038/nature12210.
-
(2013)
Nature
, vol.498
, pp. 516-520
-
-
Li, W.1
Notani, D.2
Ma, Q.3
Tanasa, B.4
Nunez, E.5
Chen, A.Y.6
Merkurjev, D.7
Zhang, J.8
Ohgi, K.9
Song, X.10
-
37
-
-
27944450018
-
Identification of genes involved in the initiation of human Th1 or Th2 cell commitment
-
Lund, R., H. Ahlfors, E. Kainonen, A.M. Lahesmaa, C. Dixon, and R. Lahesmaa. 2005. Identification of genes involved in the initiation of human Th1 or Th2 cell commitment. Eur. J. Immunol. 35:3307-3319. http://dx.doi.org/10.1002/eji.200526079.
-
(2005)
Eur. J. Immunol.
, vol.35
, pp. 3307-3319
-
-
Lund, R.1
Ahlfors, H.2
Kainonen, E.3
Lahesmaa, A.M.4
Dixon, C.5
Lahesmaa, R.6
-
38
-
-
0030853938
-
Enhancer control of local accessibility to V(D)J recombinase
-
McMurry, M.T., C. Hernandez-Munain, P. Lauzurica, and M.S. Krangel. 1997. Enhancer control of local accessibility to V(D)J recombinase. Mol. Cell. Biol. 17:4553-4561.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4553-4561
-
-
McMurry, M.T.1
Hernandez-Munain, C.2
Lauzurica, P.3
Krangel, M.S.4
-
39
-
-
84875127327
-
CTCF and cohesin: linking gene regulatory elements with their targets
-
Merkenschlager, M., and D.T. Odom. 2013. CTCF and cohesin: linking gene regulatory elements with their targets. Cell. 152:1285-1297. http://dx.doi.org/10.1016/j.cell.2013.02.029.
-
(2013)
Cell
, vol.152
, pp. 1285-1297
-
-
Merkenschlager, M.1
Odom, D.T.2
-
40
-
-
0033607175
-
RAG2 is regulated differentially in B and T cells by elements 5' of the promoter
-
Monroe, R.J., F. Chen, R. Ferrini, L. Davidson, and F.W. Alt. 1999. RAG2 is regulated differentially in B and T cells by elements 5' of the promoter. Proc. Natl. Acad. Sci. USA. 96:12713-12718. http://dx.doi .org/10.1073/pnas.96.22.12713.
-
(1999)
Proc. Natl. Acad. Sci. USA.
, vol.96
, pp. 12713-12718
-
-
Monroe, R.J.1
Chen, F.2
Ferrini, R.3
Davidson, L.4
Alt, F.W.5
-
41
-
-
84870182699
-
Noncoding transcription at enhancers: general principles and functional models
-
Natoli, G., and J.C. Andrau. 2012. Noncoding transcription at enhancers: general principles and functional models. Annu. Rev. Genet. 46:1-19. http://dx.doi.org/10.1146/annurev-genet-110711-155459.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 1-19
-
-
Natoli, G.1
Andrau, J.C.2
-
42
-
-
75749152053
-
Global regulator SATB1 recruits beta-catenin and regulates T(H)2 differentiation in Wnt-dependent manner
-
Notani, D., K.P. Gottimukkala, R.S. Jayani, A.S. Limaye, M.V. Damle, S. Mehta, P.K. Purbey, J. Joseph, and S. Galande. 2010. Global regulator SATB1 recruits beta-catenin and regulates T(H)2 differentiation in Wnt-dependent manner. PLoS Biol. 8:e1000296. http://dx.doi.org/10.1371/journal.pbio.1000296.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000296
-
-
Notani, D.1
Gottimukkala, K.P.2
Jayani, R.S.3
Limaye, A.S.4
Damle, M.V.5
Mehta, S.6
Purbey, P.K.7
Joseph, J.8
Galande, S.9
-
43
-
-
84875945705
-
ENCODE data in the UCSC Genome Browser: year 5 update
-
Rosenbloom, K.R., C.A. Sloan, V.S. Malladi, T.R. Dreszer, K. Learned, V.M. Kirkup, M.C. Wong, M. Maddren, R. Fang, S.G. Heitner, et al. 2013. ENCODE data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 41(D1):D56-D63. http://dx.doi.org/10.1093/nar/gks1172.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
, pp. D56-D63
-
-
Rosenbloom, K.R.1
Sloan, C.A.2
Malladi, V.S.3
Dreszer, T.R.4
Learned, K.5
Kirkup, V.M.6
Wong, M.C.7
Maddren, M.8
Fang, R.9
Heitner, S.G.10
-
44
-
-
84879588905
-
The SATB1 protein directs hematopoietic stem cell differentiation toward lymphoid lineages
-
Satoh, Y., T. Yokota, T. Sudo, M. Kondo, A. Lai, P.W. Kincade, T. Kouro, R. Iida, K. Kokame, T. Miyata, et al. 2013. The SATB1 protein directs hematopoietic stem cell differentiation toward lymphoid lineages. Immunity. 38:1105-1115. http://dx.doi.org/10.1016/j.immuni.2013.05.014.
-
(2013)
Immunity
, vol.38
, pp. 1105-1115
-
-
Satoh, Y.1
Yokota, T.2
Sudo, T.3
Kondo, M.4
Lai, A.5
Kincade, P.W.6
Kouro, T.7
Iida, R.8
Kokame, K.9
Miyata, T.10
-
45
-
-
72749087503
-
SATB1 and Satb2 regulate embryonic stem cell differentiation and Nanog expression
-
Savarese, F., A. Davila, R. Nechanitzky, I. De-La Rosa-Velazquez, C.F. Pereira, R. Engelke, K. Takahashi, T. Jenuwein, T. Kohwi-Shigematsu, A.G. Fisher, et al. 2009. SATB1 and Satb2 regulate embryonic stem cell differentiation and Nanog expression. Genes Dev. 23:2625-2638. http://dx.doi.org/10.1101/gad.1815709.
-
(2009)
Genes Dev
, vol.23
, pp. 2625-2638
-
-
Savarese, F.1
Davila, A.2
Nechanitzky, R.3
De-La Rosa-Velazquez, I.4
Pereira, C.F.5
Engelke, R.6
Takahashi, K.7
Jenuwein, T.8
Kohwi-Shigematsu, T.9
Fisher, A.G.10
-
46
-
-
80355122714
-
V(D)J recombination: mechanisms of initiation
-
Schatz, D.G., and P.C. Swanson. 2011. V(D)J recombination: mechanisms of initiation. Annu. Rev. Genet. 45:167-202. http://dx.doi.org/10.1146/ annurev-genet-110410-132552.
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 167-202
-
-
Schatz, D.G.1
Swanson, P.C.2
-
47
-
-
80052042965
-
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation
-
Seitan, V.C., B. Hao, K. Tachibana-Konwalski, T. Lavagnolli, H. Mira-Bontenbal, K.E. Brown, G. Teng, T. Carroll, A. Terry, K. Horan, et al. 2011. A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation. Nature. 476:467-471. http://dx.doi.org/10.1038/ nature10312.
-
(2011)
Nature
, vol.476
, pp. 467-471
-
-
Seitan, V.C.1
Hao, B.2
Tachibana-Konwalski, K.3
Lavagnolli, T.4
Mira-Bontenbal, H.5
Brown, K.E.6
Teng, G.7
Carroll, T.8
Terry, A.9
Horan, K.10
-
48
-
-
84877835738
-
Chromatin architectureTC-binding factor, and V(D)J recombination: managing long-distance relationships at antigen receptor loci
-
Shih, H.Y., and M.S. Krangel. 2013. Chromatin architectureTC-binding factor, and V(D)J recombination: managing long-distance relationships at antigen receptor loci. J. Immunol. 190:4915-4921. http://dx.doi.org/10 .4049/jimmunol.1300218.
-
(2013)
J. Immunol.
, vol.190
, pp. 4915-4921
-
-
Shih, H.Y.1
Krangel, M.S.2
-
49
-
-
84908318367
-
Required enhancer-matrin-3 network interactions for a homeodomain transcription program
-
Skowronska-Krawczyk, D., Q. Ma, M. Schwartz, K. Scully, W. Li, Z. Liu, H. Taylor, J. Tollkuhn, K.A. Ohgi, D. Notani, et al. 2014. Required enhancer-matrin-3 network interactions for a homeodomain transcription program. Nature. 514:257-261. http://dx.doi.org/10.1038/ nature13573.
-
(2014)
Nature
, vol.514
, pp. 257-261
-
-
Skowronska-Krawczyk, D.1
Ma, Q.2
Schwartz, M.3
Scully, K.4
Li, W.5
Liu, Z.6
Taylor, H.7
Tollkuhn, J.8
Ohgi, K.A.9
Notani, D.10
-
50
-
-
84865121188
-
An encyclopedia of mouse DNA elements (Mouse ENCODE)
-
Mouse ENCODE Consortium
-
Stamatoyannopoulos, J.A., M. Snyder, R. Hardison, B. Ren, T. Gingeras, D.M. Gilbert, M. Groudine, M. Bender, R. Kaul, T. Canfield, et al. Mouse ENCODE Consortium. 2012. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol. 13:418. http://dx.doi.org/ 10.1186/gb-2012-13-8-418.
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
Stamatoyannopoulos, J.A.1
Snyder, M.2
Hardison, R.3
Ren, B.4
Gingeras, T.5
Gilbert, D.M.6
Groudine, M.7
Bender, M.8
Kaul, R.9
Canfield, T.10
-
51
-
-
84876687303
-
SATB1 regulates the self-renewal of hematopoietic stem cells by promoting quiescence and repressing differentiation commitment
-
Will, B., T.O. Vogler, B. Bartholdy, F. Garrett-Bakelman, J. Mayer, L. Barreyro, A. Pandolfi, T.I. Todorova, U.C. Okoye-Okafor, R.F. Stanley, et al. 2013. SATB1 regulates the self-renewal of hematopoietic stem cells by promoting quiescence and repressing differentiation commitment. Nat. Immunol. 14:437-445. http://dx.doi.org/10.1038/ni.2572.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 437-445
-
-
Will, B.1
Vogler, T.O.2
Bartholdy, B.3
Garrett-Bakelman, F.4
Mayer, J.5
Barreyro, L.6
Pandolfi, A.7
Todorova, T.I.8
Okoye-Okafor, U.C.9
Stanley, R.F.10
-
52
-
-
0035920573
-
The role of recombination activating gene (RAG) reinduction in thymocyte development in vivo
-
Yannoutsos, N., P. Wilson, W. Yu, H.T. Chen, A. Nussenzweig, H. Petrie, and M.C. Nussenzweig. 2001. The role of recombination activating gene (RAG) reinduction in thymocyte development in vivo. J. Exp. Med. 194:471-480. http://dx.doi.org/10.1084/jem.194.4.471.
-
(2001)
J. Exp. Med.
, vol.194
, pp. 471-480
-
-
Yannoutsos, N.1
Wilson, P.2
Yu, W.3
Chen, H.T.4
Nussenzweig, A.5
Petrie, H.6
Nussenzweig, M.C.7
-
53
-
-
2942564990
-
A cis element in the recombination activating gene locus regulates gene expression by counteracting a distant silencer
-
Yannoutsos, N., V. Barreto, Z. Misulovin, A. Gazumyan, W. Yu, N. Rajewsky, B.R. Peixoto, T. Eisenreich, and M.C. Nussenzweig. 2004. A cis element in the recombination activating gene locus regulates gene expression by counteracting a distant silencer. Nat. Immunol. 5:443-450. http://dx.doi.org/10.1038/ni1053.
-
(2004)
Nat. Immunol.
, vol.5
, pp. 443-450
-
-
Yannoutsos, N.1
Barreto, V.2
Misulovin, Z.3
Gazumyan, A.4
Yu, W.5
Rajewsky, N.6
Peixoto, B.R.7
Eisenreich, T.8
Nussenzweig, M.C.9
-
54
-
-
0037057668
-
SATB1 targets chromatin remodelling to regulate genes over long distances
-
Yasui, D., M. Miyano, S. Cai, P. Varga-Weisz, and T. Kohwi-Shigematsu. 2002. SATB1 targets chromatin remodelling to regulate genes over long distances. Nature. 419:641-645. http://dx.doi.org/10.1038/nature01084.
-
(2002)
Nature
, vol.419
, pp. 641-645
-
-
Yasui, D.1
Miyano, M.2
Cai, S.3
Varga-Weisz, P.4
Kohwi-Shigematsu, T.5
-
55
-
-
0033551866
-
Coordinate regulation of RAG1 and RAG2 by cell type-specific DNA elements 5' of RAG2
-
Yu, W., Z. Misulovin, H. Suh, R.R. Hardy, M. Jankovic, N. Yannoutsos, and M.C. Nussenzweig. 1999. Coordinate regulation of RAG1 and RAG2 by cell type-specific DNA elements 5' of RAG2. Science. 285:1080-1084. http://dx.doi.org/10.1126/science.285.5430.1080.
-
(1999)
Science
, vol.285
, pp. 1080-1084
-
-
Yu, W.1
Misulovin, Z.2
Suh, H.3
Hardy, R.R.4
Jankovic, M.5
Yannoutsos, N.6
Nussenzweig, M.C.7
-
56
-
-
0033103833
-
Essential role of LAT in T cell development
-
Zhang, W., C.L. Sommers, D.N. Burshtyn, C.C. Stebbins, J.B. DeJarnette, R.P. Trible, A. Grinberg, H.C. Tsay, H.M. Jacobs, C.M. Kessler, et al. 1999. Essential role of LAT in T cell development. Immunity. 10:323-332. http://dx.doi.org/10.1016/S1074-7613(00)80032-1.
-
(1999)
Immunity
, vol.10
, pp. 323-332
-
-
Zhang, W.1
Sommers, C.L.2
Burshtyn, D.N.3
Stebbins, C.C.4
DeJarnette, J.B.5
Trible, R.P.6
Grinberg, A.7
Tsay, H.C.8
Jacobs, H.M.9
Kessler, C.M.10
|