메뉴 건너뛰기




Volumn 7, Issue , 2015, Pages

CheNER: A tool for the identification of chemical entities and their classes in biomedical literature

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84946205642     PISSN: None     EISSN: 17582946     Source Type: Journal    
DOI: 10.1186/1758-2946-7-S1-S15     Document Type: Article
Times cited : (11)

References (44)
  • 1
    • 33947304181 scopus 로고    scopus 로고
    • Overview of BioCreAtIvE: Critical assessment of information extraction for biology
    • Hirschman L, Yeh A, Blaschke C, Valencia A: Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics 2005, 6:S1.
    • (2005) BMC Bioinformatics , vol.6 , pp. S1
    • Hirschman, L.1    Yeh, A.2    Blaschke, C.3    Valencia, A.4
  • 9
    • 79960604459 scopus 로고    scopus 로고
    • Text mining for drugs and chemical compounds: Methods, tools and applications
    • Vazquez M, Krallinger M, Leitner F, Valencia A: Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications. Mol Informatics 2011, 30:506-519.
    • (2011) Mol Informatics , vol.30 , pp. 506-519
    • Vazquez, M.1    Krallinger, M.2    Leitner, F.3    Valencia, A.4
  • 12
    • 0042285135 scopus 로고
    • Computer translation of IUPAC systematic organic chemical nomenclature. 4. Concise connection tables to structure diagrams
    • Cooke-Fox DI, Kirby GH, Lord MR, Rayner JD: Computer translation of IUPAC systematic organic chemical nomenclature. 4. Concise connection tables to structure diagrams. J Chem Inf Comput Sci 1990, 30:122-127.
    • (1990) J Chem Inf Comput Sci , vol.30 , pp. 122-127
    • Cooke-Fox, D.I.1    Kirby, G.H.2    Lord, M.R.3    Rayner, J.D.4
  • 13
    • 33750289875 scopus 로고    scopus 로고
    • High-throughput identification of chemistry in life science texts
    • Berlin, Heidelberg: Springer Berlin Heidelberg;R Berthold M, Glen RC, Fischer I
    • Corbett P, Murray-Rust P: High-Throughput Identification of Chemistry in Life Science Texts. In Comput Life Sci II. Volume 4216. Berlin, Heidelberg: Springer Berlin Heidelberg;R Berthold M, Glen RC, Fischer I 2006:107-118.
    • (2006) Comput Life Sci II , vol.4216 , pp. 107-118
    • Corbett, P.1    Murray-Rust, P.2
  • 18
    • 84946208768 scopus 로고    scopus 로고
    • Chemical Patent Search
    • SureChem - Chemical Patent Search. [http://surechem.com/].
    • SureChem
  • 19
    • 0024666302 scopus 로고
    • Computer translation of IUPAC systematic organic chemical nomenclature. 1. Introduction and background to a grammar-based approach
    • Cooke-Fox DI, Kirby GH, Rayner JD: Computer translation of IUPAC systematic organic chemical nomenclature. 1. Introduction and background to a grammar-based approach. J Chem Inf Comput Sci 1989, 29:101-105.
    • (1989) J Chem Inf Comput Sci , vol.29 , pp. 101-105
    • Cooke-Fox, D.I.1    Kirby, G.H.2    Rayner, J.D.3
  • 20
    • 0024665010 scopus 로고
    • Computer translation of IUPAC systematic organic chemical nomenclature. 2. Development of a formal grammar
    • Cooke-Fox DI, Kirby GH, Rayner JD: Computer translation of IUPAC systematic organic chemical nomenclature. 2. Development of a formal grammar. J Chem Inf Comput Sci 1989, 29:106-112.
    • (1989) J Chem Inf Comput Sci , vol.29 , pp. 106-112
    • Cooke-Fox, D.I.1    Kirby, G.H.2    Rayner, J.D.3
  • 21
    • 84863506694 scopus 로고    scopus 로고
    • ChemSpot: A hybrid system for chemical named entity recognition
    • Rocktäschel T, Weidlich M, Leser U: ChemSpot: A Hybrid System for Chemical Named Entity Recognition. Bioinformatics 2012.
    • (2012) Bioinformatics
    • Rocktäschel, T.1    Weidlich, M.2    Leser, U.3
  • 23
    • 84946125762 scopus 로고    scopus 로고
    • A comparison of conditional random fields and structured support vectormachines for chemical entity recognition in biomedical literature
    • Tang B, Feng Y, Wang X, Wu Y, Zhang Y, Jiang M, Wang J, Xu H: A comparison of conditional random fields and structured support vectormachines for chemical entity recognition in biomedical literature. J Cheminform 2015, 7(Suppl 1):S8.
    • (2015) J Cheminform , vol.7 , pp. S8
    • Tang, B.1    Feng, Y.2    Wang, X.3    Wu, Y.4    Zhang, Y.5    Jiang, M.6    Wang, J.7    Xu, H.8
  • 24
    • 0036522638 scopus 로고    scopus 로고
    • The frame-based module of the SUISEKI information extraction system
    • Blaschke C, Valencia A: The frame-based module of the SUISEKI information extraction system. IEEE Intell Syst 2002, 17:14-20.
    • (2002) IEEE Intell Syst , vol.17 , pp. 14-20
    • Blaschke, C.1    Valencia, A.2
  • 25
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program
    • Aronson AR: Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proc AMIA Annu Symp AMIA Symp 2001, 17-21.
    • (2001) Proc AMIA Annu Symp AMIA Symp , pp. 17-21
    • Aronson, A.R.1
  • 27
    • 77952922700 scopus 로고    scopus 로고
    • Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents
    • Segura-Bedmar I, Crespo M, de Pablo-Sánchez C, Martínez P: Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents. BMC Bioinformatics 2010, 11:S1.
    • (2010) BMC Bioinformatics , vol.11 , pp. S1
    • Segura-Bedmar, I.1    Crespo, M.2    De Pablo-Sánchez, C.3    Martínez, P.4
  • 34
    • 78649633211 scopus 로고    scopus 로고
    • PubChem as a public resource for drug discovery
    • Li Q, Cheng T, Wang Y, Bryant SH: PubChem as a public resource for drug discovery. Drug Discov Today 2010, 15:1052-1057.
    • (2010) Drug Discov Today , vol.15 , pp. 1052-1057
    • Li, Q.1    Cheng, T.2    Wang, Y.3    Bryant, S.H.4
  • 36
    • 84925619870 scopus 로고    scopus 로고
    • TmChem: A high performance approach for chemical named entity recognitionand normalization
    • Leaman R, Wei C-H, Lu Z: tmChem: a high performance approach for chemical named entity recognitionand normalization. J Cheminform 2015, 7(Suppl 1):S3.
    • (2015) J Cheminform , vol.7 , pp. S3
    • Leaman, R.1    Wei, C.-H.2    Lu, Z.3
  • 37
    • 84946143189 scopus 로고    scopus 로고
    • LeadMine: A grammar and dictionary driven approach to chemical entity recognition
    • Lowe DM, Sayle RA: LeadMine: A grammar and dictionary driven approach to chemical entity recognition. J Cheminform 2015, 7(Suppl 1): S5.
    • (2015) J Cheminform , vol.7 , pp. S5
    • Lowe, D.M.1    Sayle, R.A.2
  • 38
    • 84901070342 scopus 로고    scopus 로고
    • Chemistry-specific features and heuristics for developing a CRF-based chemical named entity recogniser
    • Bethesda, Maryland: Association for Computational Linguistics
    • Batista-Navarro RT, Rak R, Ananiadou S: Chemistry-specific Features and Heuristics for Developing a CRF-based Chemical Named Entity Recogniser. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:55-59.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 55-59
    • Batista-Navarro, R.T.1    Rak, R.2    Ananiadou, S.3
  • 39
    • 84901003412 scopus 로고    scopus 로고
    • Extended feature set for chemical named entity recognition and indexing
    • Bethesda, Maryland: Association for Computational Linguistics
    • Huber T, Rocktäschel T, Weidlich M, Thomas P, Leser U: Extended Feature Set for Chemical Named Entity Recognition and Indexing. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:88-91.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 88-91
    • Huber, T.1    Rocktäschel, T.2    Weidlich, M.3    Thomas, P.4    Leser, U.5
  • 40
    • 84946235198 scopus 로고    scopus 로고
    • An ensemble information extraction approach to the BioCreative CHEMDNER task
    • Bethesda, Maryland: Association for Computational Linguistics
    • Khabsa M, Giles CL: An Ensemble Information Extraction Approach to the BioCreative CHEMDNER Task. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:105-112.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 105-112
    • Khabsa, M.1    Giles, C.L.2
  • 41
    • 84946138395 scopus 로고    scopus 로고
    • Recognition of chemical entities: Combining dictionary-based andgrammar-based approaches
    • Akhondi SA, Hettne M, van der Host E, van Mulligen E, Kors JA: Recognition of chemical entities: combining dictionary-based andgrammar-based approaches. J Cheminform 2015, 7(Suppl 1):S10.
    • (2015) J Cheminform , vol.7 , pp. S10
    • Akhondi, S.A.1    Hettne, M.2    Van Der-Host, E.3    Van Mulligen, E.4    Kors, J.A.5
  • 42
    • 84908327502 scopus 로고    scopus 로고
    • Recognizing chemical compounds and drugs: A rule-based approach using semantic information
    • Bethesda, Maryland: Association for Computational Linguistics
    • Lana-Serrano S, Sanchez-Cisneros D, Campillos L, Segura-Bedmar I: Recognizing Chemical Compounds and Drugs: a Rule-Based Approach Using Semantic Information. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:121-128.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 121-128
    • Lana-Serrano, S.1    Sanchez-Cisneros, D.2    Campillos, L.3    Segura-Bedmar, I.4
  • 43
    • 84900991126 scopus 로고    scopus 로고
    • Ensemble approach to extract chemical named entity by using results of multiple CNER systems with different characteristic
    • Bethesda, Maryland: Association for Computational Linguistics
    • Yoshioka M, Dieb TM: Ensemble Approach to Extract Chemical Named Entity by Using Results of Multiple CNER Systems with Different Characteristic. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:162-167.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 162-167
    • Yoshioka, M.1    Dieb, T.M.2
  • 44
    • 84946107142 scopus 로고    scopus 로고
    • Combining machine learning with dictionary lookup for chemical compound and drug name recognition task
    • Bethesda, Maryland: Association for Computational Linguistics
    • Li L, Guo R, Liu S, Zhang P, Zheng T, Huang D, Zhou H: Combining Machine Learning with Dictionary Lookup for Chemical Compound and Drug Name Recognition Task. In Proc Fourth BioCreative Chall Eval Work. Volume 2. Bethesda, Maryland: Association for Computational Linguistics; 2013:171-177.
    • (2013) Proc Fourth BioCreative Chall Eval Work , vol.2 , pp. 171-177
    • Li, L.1    Guo, R.2    Liu, S.3    Zhang, P.4    Zheng, T.5    Huang, D.6    Zhou, H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.