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Volumn 5, Issue , 2015, Pages

A high-throughput RNA-seq approach to profile transcriptional responses

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HIGH THROUGHPUT SEQUENCING; HUMAN; PROCEDURES; TUMOR CELL LINE;

EID: 84946110619     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep14976     Document Type: Article
Times cited : (20)

References (21)
  • 1
    • 70349882120 scopus 로고    scopus 로고
    • Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses
    • Amit, I. et al. Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses. Science (New York, N.Y.) 326, 257-263 (2009).
    • (2009) Science (New York, N.Y. , vol.326 , pp. 257-263
    • Amit, I.1
  • 2
    • 84884212632 scopus 로고    scopus 로고
    • Inter-ethnic differences in lymphocyte sensitivity to glucocorticoids reflect variation in transcriptional response
    • Maranville, J. C., Baxter, S. S., Torres, J. M. and Di Rienzo, A. Inter-ethnic differences in lymphocyte sensitivity to glucocorticoids reflect variation in transcriptional response. The Pharmacogenomics Journal 13, 121-129 (2011).
    • (2011) The Pharmacogenomics Journal , vol.13 , pp. 121-129
    • Maranville, J.C.1    Baxter, S.S.2    Torres, J.M.3    Di Rienzo, A.4
  • 3
    • 84897394513 scopus 로고    scopus 로고
    • The Functional Consequences of Variation in Transcription Factor Binding
    • Cusanovich, D. A., Pavlovic, B., Pritchard, J. K. and Gilad, Y. The Functional Consequences of Variation in Transcription Factor Binding. PLoS Genetics 10, e1004226 (2014).
    • (2014) PLoS Genetics , vol.10 , pp. e1004226
    • Cusanovich, D.A.1    Pavlovic, B.2    Pritchard, J.K.3    Gilad, Y.4
  • 4
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb, J. et al. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science (New York, N.Y.) 313, 1929-1935 (2006).
    • (2006) Science (New York, N.Y. , vol.313 , pp. 1929-1935
    • Lamb, J.1
  • 6
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science (New York, N.Y.) 320, 1344-1349 (2008).
    • (2008) Science (New York, N.Y. , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 7
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M. and Gilad, Y. RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Research 18, 1509-1517 (2008).
    • (2008) Genome Research , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 8
    • 70349956497 scopus 로고    scopus 로고
    • Direct RNA sequencing
    • Ozsolak, F. et al. Direct RNA sequencing. Nature 461, 814-818 (2009).
    • (2009) Nature , vol.461 , pp. 814-818
    • Ozsolak, F.1
  • 9
    • 84855331824 scopus 로고    scopus 로고
    • Transposase mediated construction of RNA-seq libraries
    • Gertz, J. et al. Transposase mediated construction of RNA-seq libraries. Genome Research 22, 134-141 (2012).
    • (2012) Genome Research , vol.22 , pp. 134-141
    • Gertz, J.1
  • 10
    • 84926334587 scopus 로고    scopus 로고
    • A cost-effective RNA sequencing protocol for large-scale gene expression studies
    • Hou, Z. et al. A cost-effective RNA sequencing protocol for large-scale gene expression studies. Scientific Reports 5, 9570 (2015).
    • (2015) Scientific Reports , vol.5 , pp. 9570
    • Hou, Z.1
  • 11
    • 84894135987 scopus 로고    scopus 로고
    • Exploring the shallow end; Estimating information content in transcriptomics studies
    • Kliebenstein, D. J. Exploring the shallow end; estimating information content in transcriptomics studies. Frontiers in plant science 3, 213 (2012).
    • (2012) Frontiers in Plant Science , vol.3 , pp. 213
    • Kliebenstein, D.J.1
  • 12
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen, A. A. et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nature Biotechnology 1053-1058 (2014).
    • (2014) Nature Biotechnology , pp. 1053-1058
    • Pollen, A.A.1
  • 13
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., Huber, W. and Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15, 550 (2014).
    • (2014) Genome Biology , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 15
    • 84876974673 scopus 로고    scopus 로고
    • Genetic, functional and molecular features of glucocorticoid receptor binding
    • Luca, F. et al. Genetic, functional and molecular features of glucocorticoid receptor binding. PloS one 8, e61654 (2013).
    • (2013) PloS One , vol.8 , pp. e61654
    • Luca, F.1
  • 16
    • 79960967243 scopus 로고    scopus 로고
    • Interactions between glucocorticoid treatment and Cis-regulatory polymorphisms contribute to cellular response phenotypes
    • Maranville, J. C. et al. Interactions between glucocorticoid treatment and Cis-regulatory polymorphisms contribute to cellular response phenotypes. PLoS Genetics 7, e1002162 (2011).
    • (2011) PLoS Genetics , vol.7 , pp. e1002162
    • Maranville, J.C.1
  • 17
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T. and Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature protocols 4, 44-57 (2009).
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 18
    • 50249179101 scopus 로고    scopus 로고
    • Vitamin effects on the immune system: Vitamins A and D take centre stage
    • Mora, J. R., Iwata, M. and von Andrian, U. H. Vitamin effects on the immune system: vitamins A and D take centre stage. Nature reviews. Immunology 8, 685-698 (2008).
    • (2008) Nature Reviews. Immunology , vol.8 , pp. 685-698
    • Mora, J.R.1    Iwata, M.2    Von Andrian, U.H.3
  • 19
    • 78649714014 scopus 로고    scopus 로고
    • Analysis and design of RNA sequencing experiments for identifying isoform regulation
    • Katz, Y., Wang, E. T., Airoldi, E. M. and Burge, C. B. Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nature methods 7, 1009-1015 (2010).
    • (2010) Nature Methods , vol.7 , pp. 1009-1015
    • Katz, Y.1    Wang, E.T.2    Airoldi, E.M.3    Burge, C.B.4
  • 20
    • 84927739680 scopus 로고    scopus 로고
    • Quasar: Quantitative allele-specific analysis of reads
    • Harvey, C. T. et al. Quasar: quantitative allele-specific analysis of reads. Bioinformatics 31, 1235-1242 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 1235-1242
    • Harvey, C.T.1
  • 21
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2


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