메뉴 건너뛰기




Volumn 9, Issue 10, 2015, Pages 9922-9929

Single-Molecule Manipulation of the Duplex Formation and Dissociation at the G-Quadruplex/i-Motif Site in the DNA Nanostructure

Author keywords

DNA origami; G quadruplex; high speed AFM; i motif; single molecule observation

Indexed keywords

ATOMIC FORCE MICROSCOPY; DISSOCIATION; MOLECULES; NANOSTRUCTURES; TOPOLOGY;

EID: 84945935082     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/acsnano.5b03413     Document Type: Article
Times cited : (51)

References (28)
  • 1
    • 33846928449 scopus 로고    scopus 로고
    • G-Quadruplexes in Promoters throughout the Human Genome
    • Huppert, J. L.; Balasubramanian, S. G-Quadruplexes in Promoters throughout the Human Genome Nucleic Acids Res. 2006, 35, 406-413 10.1093/nar/gkl1057
    • (2006) Nucleic Acids Res. , vol.35 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 2
    • 0037015078 scopus 로고    scopus 로고
    • Direct Evidence for a G-Quadruplex in a Promoter Region and its Targeting with a Small Molecule to Repress c-MYC Transcription
    • Siddiqui-Jain, A.; Grand, C. L.; Bearss, D. J.; Hurley, L. H. Direct Evidence for a G-Quadruplex in a Promoter Region and its Targeting with a Small Molecule to Repress c-MYC Transcription Proc. Natl. Acad. Sci. U. S. A. 2002, 99, 11593-11598 10.1073/pnas.182256799
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 3
    • 0027278767 scopus 로고
    • A Tetrameric DNA Structure with Protonated Cytosine.Cytosine Base Pairs
    • Gehring, K.; Leroy, J. L.; Gueron, M. A Tetrameric DNA Structure with Protonated Cytosine.Cytosine Base Pairs Nature 1993, 363, 561-565 10.1038/363561a0
    • (1993) Nature , vol.363 , pp. 561-565
    • Gehring, K.1    Leroy, J.L.2    Gueron, M.3
  • 4
    • 33644858313 scopus 로고    scopus 로고
    • Formation of the G-Quadruplex and i-Motif Structures in Retinoblastoma Susceptibility Genes (Rb)
    • Xu, Y.; Sugiyama, H. Formation of the G-Quadruplex and i-Motif Structures in Retinoblastoma Susceptibility Genes (Rb) Nucleic Acids Res. 2006, 34, 949-954 10.1093/nar/gkj485
    • (2006) Nucleic Acids Res. , vol.34 , pp. 949-954
    • Xu, Y.1    Sugiyama, H.2
  • 5
    • 65649089445 scopus 로고    scopus 로고
    • The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression
    • Sun, D.; Hurley, L. H. The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression J. Med. Chem. 2009, 52, 2863-2874 10.1021/jm900055s
    • (2009) J. Med. Chem. , vol.52 , pp. 2863-2874
    • Sun, D.1    Hurley, L.H.2
  • 6
    • 77954270742 scopus 로고    scopus 로고
    • Coexistence of an ILPR i-Motif and a Partially Folded Structure with Comparable Mechanical Stability Revealed at the Single-Molecule Level
    • Dhakal, S.; Schonhoft, J. D.; Koirala, D.; Yu, Z.; Basu, S.; Mao, H. Coexistence of an ILPR i-Motif and a Partially Folded Structure with Comparable Mechanical Stability Revealed at the Single-Molecule Level J. Am. Chem. Soc. 2010, 132, 8991-8997 10.1021/ja100944j
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 8991-8997
    • Dhakal, S.1    Schonhoft, J.D.2    Koirala, D.3    Yu, Z.4    Basu, S.5    Mao, H.6
  • 7
    • 84861895605 scopus 로고    scopus 로고
    • G-Quadruplex and i-Motif are Mutually Exclusive in ILPR Double-Stranded DNA
    • Dhakal, S.; Yu, Z.; Konik, R.; Cui, Y.; Koirala, D.; Mao, H. G-Quadruplex and i-Motif are Mutually Exclusive in ILPR Double-Stranded DNA Biophys. J. 2012, 102, 2575-2584 10.1016/j.bpj.2012.04.024
    • (2012) Biophys. J. , vol.102 , pp. 2575-2584
    • Dhakal, S.1    Yu, Z.2    Konik, R.3    Cui, Y.4    Koirala, D.5    Mao, H.6
  • 8
    • 34548183518 scopus 로고    scopus 로고
    • Formation of Pseudosymmetrical G-Quadruplex and i-Motif Structures in the Proximal Promoter Region of the RET Oncogene
    • Guo, K.; Pourpak, A.; Beetz-Rogers, K.; Gokhale, V.; Sun, D.; Hurley, L. H. Formation of Pseudosymmetrical G-Quadruplex and i-Motif Structures in the Proximal Promoter Region of the RET Oncogene J. Am. Chem. Soc. 2007, 129, 10220-10228 10.1021/ja072185g
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 10220-10228
    • Guo, K.1    Pourpak, A.2    Beetz-Rogers, K.3    Gokhale, V.4    Sun, D.5    Hurley, L.H.6
  • 9
    • 0345868518 scopus 로고    scopus 로고
    • Duplex Dissociation of Telomere DNAs Induced by Molecular Crowding
    • Miyoshi, D.; Matsumura, S.; Nakano, S.; Sugimoto, N. Duplex Dissociation of Telomere DNAs Induced by Molecular Crowding J. Am. Chem. Soc. 2004, 126, 165-169 10.1021/ja036721q
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 165-169
    • Miyoshi, D.1    Matsumura, S.2    Nakano, S.3    Sugimoto, N.4
  • 10
    • 67749091086 scopus 로고    scopus 로고
    • ILPR G-Quadruplexes Formed in Seconds Demonstrate High Mechanical Stabilities
    • Yu, Z.; Schonhoft, J. D.; Dhakal, S.; Bajracharya, R.; Hegde, R.; Basu, S.; Mao, H. ILPR G-Quadruplexes Formed in Seconds Demonstrate High Mechanical Stabilities J. Am. Chem. Soc. 2009, 131, 1876-1882 10.1021/ja806782s
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 1876-1882
    • Yu, Z.1    Schonhoft, J.D.2    Dhakal, S.3    Bajracharya, R.4    Hegde, R.5    Basu, S.6    Mao, H.7
  • 11
    • 84902589307 scopus 로고    scopus 로고
    • Switchable Reconfiguration of Nucleic Acid Nanostructures by Stimuli-Responsive DNA Machines
    • Liu, X.; Lu, C. H.; Willner, I. Switchable Reconfiguration of Nucleic Acid Nanostructures by Stimuli-Responsive DNA Machines Acc. Chem. Res. 2014, 47, 1673-1680 10.1021/ar400316h
    • (2014) Acc. Chem. Res. , vol.47 , pp. 1673-1680
    • Liu, X.1    Lu, C.H.2    Willner, I.3
  • 12
    • 84921025847 scopus 로고    scopus 로고
    • DNA Switches: From Principles to Applications
    • Wang, F.; Liu, X.; Willner, I. DNA Switches: From Principles to Applications Angew. Chem., Int. Ed. 2015, 54, 1098-1129 10.1002/anie.201404652
    • (2015) Angew. Chem., Int. Ed. , vol.54 , pp. 1098-1129
    • Wang, F.1    Liu, X.2    Willner, I.3
  • 13
    • 79952998426 scopus 로고    scopus 로고
    • Nucleic Acid Based Molecular Devices
    • Krishnan, Y.; Simmel, F. C. Nucleic Acid Based Molecular Devices Angew. Chem., Int. Ed. 2011, 50, 3124-3156 10.1002/anie.200907223
    • (2011) Angew. Chem., Int. Ed. , vol.50 , pp. 3124-3156
    • Krishnan, Y.1    Simmel, F.C.2
  • 14
    • 84902584980 scopus 로고    scopus 로고
    • Single-Molecule Imaging of Dynamic Motions of Biomolecules in DNA Origami Nanostructures using High-Speed Atomic Force Microscopy
    • Endo, M.; Sugiyama, H. Single-Molecule Imaging of Dynamic Motions of Biomolecules in DNA Origami Nanostructures using High-Speed Atomic Force Microscopy Acc. Chem. Res. 2014, 47, 1645-1653 10.1021/ar400299m
    • (2014) Acc. Chem. Res. , vol.47 , pp. 1645-1653
    • Endo, M.1    Sugiyama, H.2
  • 15
    • 84890490806 scopus 로고    scopus 로고
    • State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins
    • Rajendran, A.; Endo, M.; Sugiyama, H. State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins Chem. Rev. 2014, 114, 1493-1520 10.1021/cr300253x
    • (2014) Chem. Rev. , vol.114 , pp. 1493-1520
    • Rajendran, A.1    Endo, M.2    Sugiyama, H.3
  • 16
    • 78649282278 scopus 로고    scopus 로고
    • Visualization of Dynamic Conformational Switching of the G-Quadruplex in a DNA Nanostructure
    • Sannohe, Y.; Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Visualization of Dynamic Conformational Switching of the G-Quadruplex in a DNA Nanostructure J. Am. Chem. Soc. 2010, 132, 16311-16313 10.1021/ja1058907
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 16311-16313
    • Sannohe, Y.1    Endo, M.2    Katsuda, Y.3    Hidaka, K.4    Sugiyama, H.5
  • 17
    • 84885909655 scopus 로고    scopus 로고
    • Controlling the Stoichiometry and Strand Polarity of a Tetramolecular G-Quadruplex Structure by Using a DNA Origami Frame
    • Rajendran, A.; Endo, M.; Hidaka, K.; Tran, P. L.; Mergny, J. L.; Sugiyama, H. Controlling the Stoichiometry and Strand Polarity of a Tetramolecular G-Quadruplex Structure by Using a DNA Origami Frame Nucleic Acids Res. 2013, 41, 8738-8747 10.1093/nar/gkt592
    • (2013) Nucleic Acids Res. , vol.41 , pp. 8738-8747
    • Rajendran, A.1    Endo, M.2    Hidaka, K.3    Tran, P.L.4    Mergny, J.L.5    Sugiyama, H.6
  • 18
    • 84898627355 scopus 로고    scopus 로고
    • Direct and Single-Molecule Visualization of the Solution-State Structures of G-Hairpin and G-Triplex Intermediates
    • Rajendran, A.; Endo, M.; Hidaka, K.; Sugiyama, H. Direct and Single-Molecule Visualization of the Solution-State Structures of G-Hairpin and G-Triplex Intermediates Angew. Chem., Int. Ed. 2014, 53, 4107-4112 10.1002/anie.201308903
    • (2014) Angew. Chem., Int. Ed. , vol.53 , pp. 4107-4112
    • Rajendran, A.1    Endo, M.2    Hidaka, K.3    Sugiyama, H.4
  • 19
    • 84872824931 scopus 로고    scopus 로고
    • Direct and Real-Time Observation of Rotary Movement of a DNA Nanomechanical Device
    • Rajendran, A.; Endo, M.; Hidaka, K.; Sugiyama, H. Direct and Real-Time Observation of Rotary Movement of a DNA Nanomechanical Device J. Am. Chem. Soc. 2013, 135, 1117-1123 10.1021/ja310454k
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 1117-1123
    • Rajendran, A.1    Endo, M.2    Hidaka, K.3    Sugiyama, H.4
  • 20
    • 84889601316 scopus 로고    scopus 로고
    • Regulation of B-Z Conformational Transition and Complex Formation with a Z-Form Binding Protein by Introduction of Constraint to Double-Stranded DNA by using a DNA Nanoscaffold
    • Endo, M.; Inoue, M.; Suzuki, Y.; Masui, C.; Morinaga, H.; Hidaka, K.; Sugiyama, H. Regulation of B-Z Conformational Transition and Complex Formation with a Z-Form Binding Protein by Introduction of Constraint to Double-Stranded DNA by using a DNA Nanoscaffold Chem.-Eur. J. 2013, 19, 16887-16890 10.1002/chem.201303830
    • (2013) Chem. - Eur. J. , vol.19 , pp. 16887-16890
    • Endo, M.1    Inoue, M.2    Suzuki, Y.3    Masui, C.4    Morinaga, H.5    Hidaka, K.6    Sugiyama, H.7
  • 21
    • 69049100184 scopus 로고    scopus 로고
    • A Supra-Photoswitch Involving Sandwiched DNA Base Pairs and Azobenzenes for Light-Driven Nanostructures and Nanodevices
    • Liang, X.; Mochizuki, T.; Asanuma, H. A Supra-Photoswitch Involving Sandwiched DNA Base Pairs and Azobenzenes for Light-Driven Nanostructures and Nanodevices Small 2009, 5, 1761-1768 10.1002/smll.200900223
    • (2009) Small , vol.5 , pp. 1761-1768
    • Liang, X.1    Mochizuki, T.2    Asanuma, H.3
  • 22
    • 84867527164 scopus 로고    scopus 로고
    • Single-Molecule Visualization of the Hybridization and Dissociation of Photoresponsive Oligonucleotides and their Reversible Switching Behavior in a DNA Nanostructure
    • Endo, M.; Yang, Y.; Suzuki, Y.; Hidaka, K.; Sugiyama, H. Single-Molecule Visualization of the Hybridization and Dissociation of Photoresponsive Oligonucleotides and their Reversible Switching Behavior in a DNA Nanostructure Angew. Chem., Int. Ed. 2012, 51, 10518-10522 10.1002/anie.201205247
    • (2012) Angew. Chem., Int. Ed. , vol.51 , pp. 10518-10522
    • Endo, M.1    Yang, Y.2    Suzuki, Y.3    Hidaka, K.4    Sugiyama, H.5
  • 23
    • 84896983426 scopus 로고    scopus 로고
    • Direct Observation of the Dual-Switching Behaviors corresponding to the State Transition in a DNA Nanoframe
    • Yang, Y.; Endo, M.; Suzuki, Y.; Hidaka, K.; Sugiyama, H. Direct Observation of the Dual-Switching Behaviors corresponding to the State Transition in a DNA Nanoframe Chem. Commun. 2014, 50, 4211-4213 10.1039/c4cc00489b
    • (2014) Chem. Commun. , vol.50 , pp. 4211-4213
    • Yang, Y.1    Endo, M.2    Suzuki, Y.3    Hidaka, K.4    Sugiyama, H.5
  • 24
    • 76149143416 scopus 로고    scopus 로고
    • Regulation of DNA Methylation using Different Tensions of Double Strands Constructed in a Defined DNA Nanostructure
    • Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Regulation of DNA Methylation using Different Tensions of Double Strands Constructed in a Defined DNA Nanostructure J. Am. Chem. Soc. 2010, 132, 1592-1597 10.1021/ja907649w
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 1592-1597
    • Endo, M.1    Katsuda, Y.2    Hidaka, K.3    Sugiyama, H.4
  • 25
    • 78650160580 scopus 로고    scopus 로고
    • A Versatile DNA Nanochip for Direct Analysis of DNA Base-Excision Repair
    • Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. A Versatile DNA Nanochip for Direct Analysis of DNA Base-Excision Repair Angew. Chem., Int. Ed. 2010, 49, 9412-9416 10.1002/anie.201003604
    • (2010) Angew. Chem., Int. Ed. , vol.49 , pp. 9412-9416
    • Endo, M.1    Katsuda, Y.2    Hidaka, K.3    Sugiyama, H.4
  • 26
    • 84892162390 scopus 로고    scopus 로고
    • DNA Origami Based Visualization System for Studying Site-Specific Recombination Events
    • Suzuki, Y.; Endo, M.; Katsuda, Y.; Ou, K.; Hidaka, K.; Sugiyama, H. DNA Origami Based Visualization System for Studying Site-Specific Recombination Events J. Am. Chem. Soc. 2014, 136, 211-218 10.1021/ja408656y
    • (2014) J. Am. Chem. Soc. , vol.136 , pp. 211-218
    • Suzuki, Y.1    Endo, M.2    Katsuda, Y.3    Ou, K.4    Hidaka, K.5    Sugiyama, H.6
  • 27
    • 84903142539 scopus 로고    scopus 로고
    • Direct Analysis of Holliday Junction Resolving Enzyme in a DNA Origami Nanostructure
    • Suzuki, Y.; Endo, M.; Canas, C.; Ayora, S.; Alonso, J. C.; Sugiyama, H.; Takeyasu, K. Direct Analysis of Holliday Junction Resolving Enzyme in a DNA Origami Nanostructure Nucleic Acids Res. 2014, 42, 7421-7428 10.1093/nar/gku320
    • (2014) Nucleic Acids Res. , vol.42 , pp. 7421-7428
    • Suzuki, Y.1    Endo, M.2    Canas, C.3    Ayora, S.4    Alonso, J.C.5    Sugiyama, H.6    Takeyasu, K.7
  • 28
    • 67249146336 scopus 로고    scopus 로고
    • Direct Experimental Evidence for Quadruplex-Quadruplex Interaction within the Human ILPR
    • Schonhoft, J. D.; Bajracharya, R.; Dhakal, S.; Yu, Z.; Mao, H.; Basu, S. Direct Experimental Evidence for Quadruplex-Quadruplex Interaction within the Human ILPR Nucleic Acids Res. 2009, 37, 3310-3320 10.1093/nar/gkp181
    • (2009) Nucleic Acids Res. , vol.37 , pp. 3310-3320
    • Schonhoft, J.D.1    Bajracharya, R.2    Dhakal, S.3    Yu, Z.4    Mao, H.5    Basu, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.