-
1
-
-
0033678131
-
The information content of a character under a Markov model of evolution
-
Shpak M, Churchill GA. The information content of a character under a Markov model of evolution. Mol Phylogenet Evol 2000;17:231-43.
-
(2000)
Mol Phylogenet Evol
, vol.17
, pp. 231-243
-
-
Shpak, M.1
Churchill, G.A.2
-
2
-
-
34447279942
-
Profiling phylogenetic informativeness
-
Townsend JP. Profiling phylogenetic informativeness. Syst Biol 2006;56: 222-31.
-
(2006)
Syst Biol
, vol.56
, pp. 222-231
-
-
Townsend, J.P.1
-
3
-
-
84865202478
-
Phylogenetic signal and noise: Predicting the power off a data set to resolve phylogeny
-
Townsend JP, Su Z, Tekle YI. Phylogenetic signal and noise: predicting the power off a data set to resolve phylogeny. Syst Biol 2012;61:835-49.
-
(2012)
Syst Biol
, vol.61
, pp. 835-849
-
-
Townsend, J.P.1
Su, Z.2
Tekle, Y.I.3
-
4
-
-
84901318643
-
Phylogenetic quantification of intra-tumour heterogeneity
-
Schwarz RF, Trinh A, Sipos B, Brenton JD, Goldman N, Markowetz F. Phylogenetic quantification of intra-tumour heterogeneity. PLOS Comput Biol 2014;10:e1003535.
-
(2014)
PLOS Comput Biol
, vol.10
, pp. e1003535
-
-
Schwarz, R.F.1
Trinh, A.2
Sipos, B.3
Brenton, J.D.4
Goldman, N.5
Markowetz, F.6
-
5
-
-
84924359778
-
Spatial and temporal heterogeneity in high-grade serous ovarian cancer: A phylogenetic analysis
-
Schwarz RF, Ng CKY, Cooke SL, Newman S, Temple J, Piskorz AM, et al. Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis. PLOS Med 2015;12:e1001789.
-
(2015)
PLOS Med
, vol.12
, pp. e1001789
-
-
Schwarz, R.F.1
Ng, C.K.Y.2
Cooke, S.L.3
Newman, S.4
Temple, J.5
Piskorz, A.M.6
-
6
-
-
84926330368
-
Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer
-
Hong MKH, Macintyre G, Wedge DC, Van Loo P, Patel K, Lunke S, et al.. Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer. Nat Commun 2015;6:6605.
-
(2015)
Nat Commun
, vol.6
, pp. 6605
-
-
Hong, M.K.H.1
Macintyre, G.2
Wedge, D.C.3
Van Loo, P.4
Patel, K.5
Lunke, S.6
-
7
-
-
84928405167
-
The evolutionary history of lethalmetastatic prostate cancer
-
Gundem G, Van Loo P, Kremeyer B, Alexandrov LB, Tubio JMC, Papaemmanuil E, et al. The evolutionary history of lethalmetastatic prostate cancer. Nature 2015;520:353-6.
-
(2015)
Nature
, vol.520
, pp. 353-356
-
-
Gundem, G.1
Van Loo, P.2
Kremeyer, B.3
Alexandrov, L.B.4
Tubio, J.M.C.5
Papaemmanuil, E.6
-
8
-
-
0032958615
-
Does evolution in body patterning genes drive morphological change-or vice-vesa?
-
Budd G. Does evolution in body patterning genes drive morphological change-or vice-vesa? Bioessays 1994;21:326-32.
-
(1994)
Bioessays
, vol.21
, pp. 326-332
-
-
Budd, G.1
-
11
-
-
84867401287
-
Ultradeep sequencing analysis of population dynamics of virus escape mutants in RNAi-mediated resistant plants
-
Martinez F, Lafforgue G, Morelli MJ, Gonzalez-Candelas F, Chua N-H, Daros J-A, Elena SF. Ultradeep sequencing analysis of population dynamics of virus escape mutants in RNAi-mediated resistant plants. Mol Biol Evol 2012;29:3297-307.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3297-3307
-
-
Martinez, F.1
Lafforgue, G.2
Morelli, M.J.3
Gonzalez-Candelas, F.4
Chua, N.-H.5
Daros, J.-A.6
Elena, S.F.7
-
12
-
-
79955125679
-
ShoRAH: Estimating the genetic diversity of a mixed sample from next-generation sequence data
-
Zagordi O, Bhattacharya A, Eriksson N, Beerenwinkel N. ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequence data. BMC Bioinformatics 2011;12:199.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 199
-
-
Zagordi, O.1
Bhattacharya, A.2
Eriksson, N.3
Beerenwinkel, N.4
-
13
-
-
84936890500
-
Subclonal diversification of primary breast cancer revealed by multiregion sequencing
-
Yates LR, Gerstung M, Knappskog S, Desmedt C, Gundem G, Van Loo P, et al. Subclonal diversification of primary breast cancer revealed by multiregion sequencing. Nat Med 2015;21:751-9.
-
(2015)
Nat Med
, vol.21
, pp. 751-759
-
-
Yates, L.R.1
Gerstung, M.2
Knappskog, S.3
Desmedt, C.4
Gundem, G.5
Van Loo, P.6
-
14
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed bymultiregion sequencing
-
Gerlinger M, Rowan AJ, Horswell S, Larkin J, Endesfelder D, Gronroos E, et al. Intratumor heterogeneity and branched evolution revealed bymultiregion sequencing. N Engl J Med. 2012;366:883-92.
-
(2012)
N Engl J Med.
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
Rowan, A.J.2
Horswell, S.3
Larkin, J.4
Endesfelder, D.5
Gronroos, E.6
-
15
-
-
84983720414
-
Rapid growth of hepatocellular carcinoma and the driving mutations revealed by cellpopulation genetic analysis of whole-genome data
-
Tao Y, Ruan J, Yeh S-H, Lu X, Wang Y, Zhai W, et al. Rapid growth of hepatocellular carcinoma and the driving mutations revealed by cellpopulation genetic analysis of whole-genome data. Proc Natl Acad Sci U S A 2011;108:12042-7.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12042-12047
-
-
Tao, Y.1
Ruan, J.2
Yeh, S.-H.3
Lu, X.4
Wang, Y.5
Zhai, W.6
-
16
-
-
78049398107
-
Distance metastasis occurs late during the genetic evolution of pancreatic cancer
-
Yachida S, Jones S, Bozic I, Antal T, Leary R, Fu B, et al. Distance metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 2010;467:1114-7.
-
(2010)
Nature
, vol.467
, pp. 1114-1117
-
-
Yachida, S.1
Jones, S.2
Bozic, I.3
Antal, T.4
Leary, R.5
Fu, B.6
-
17
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin N, Kendall J, Troge J, Andrews P, Rodgers L, McIndoo J, et al. Tumour evolution inferred by single-cell sequencing. Nature 2011;472:90-94.
-
(2011)
Nature
, vol.472
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
Andrews, P.4
Rodgers, L.5
McIndoo, J.6
-
18
-
-
84863230091
-
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor
-
Xu X, Hou Y, Yin X, Bao L, Tang A, Song L, et al. Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 2012;148:886-95.
-
(2012)
Cell
, vol.148
, pp. 886-895
-
-
Xu, X.1
Hou, Y.2
Yin, X.3
Bao, L.4
Tang, A.5
Song, L.6
-
19
-
-
84863229772
-
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
-
Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, et al. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 2012;148:873-85.
-
(2012)
Cell
, vol.148
, pp. 873-885
-
-
Hou, Y.1
Song, L.2
Zhu, P.3
Zhang, B.4
Tao, Y.5
Xu, X.6
-
20
-
-
84887255230
-
Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscleinvasive bladder cancer
-
Li Y, Xu X, Song L, Hou Y, Li Z, Tsang S, et al. Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscleinvasive bladder cancer. GigaScience 2012;1:1-14.
-
(2012)
GigaScience
, vol.1
, pp. 1-14
-
-
Li, Y.1
Xu, X.2
Song, L.3
Hou, Y.4
Li, Z.5
Tsang, S.6
-
21
-
-
79957815376
-
Future medical applications of single-cell sequencing in cancer
-
Navin N, Hicks J. Future medical applications of single-cell sequencing in cancer. Genome Med 2011;3:31.
-
(2011)
Genome Med
, vol.3
, pp. 31
-
-
Navin, N.1
Hicks, J.2
-
22
-
-
63049090100
-
Metastasis: From dissemination to organspecific colonization
-
Nguyen DX, Bos PD, Massague J. Metastasis: from dissemination to organspecific colonization. Nat Rev Cancer 2009;9:274-84.
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 274-284
-
-
Nguyen, D.X.1
Bos, P.D.2
Massague, J.3
-
23
-
-
0038179723
-
Cost of migration: Invasion of malignant gliomas and implications for treatment
-
Giese A, Vjerkvig R, Berens ME, Westphal M. Cost of migration: invasion of malignant gliomas and implications for treatment. J Clin Oncol 2003;21: 1625-36.
-
(2003)
J Clin Oncol
, vol.21
, pp. 1625-1636
-
-
Giese, A.1
Vjerkvig, R.2
Berens, M.E.3
Westphal, M.4
-
25
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein J. Phylogenies and the comparative method. Am Nat 1984;125: 1-15.
-
(1984)
Am Nat
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
26
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989;123:585-95.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
27
-
-
0035546129
-
The neutral theory in the genomic era
-
Fay JC, Wu CI. The neutral theory in the genomic era. Curr Opin Genet Dev 2001;11:642-6.
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 642-646
-
-
Fay, J.C.1
Wu, C.I.2
-
28
-
-
79952136825
-
Statistical properties of the branch-site test of positive selection
-
Yang Z, dos Reis M. Statistical properties of the branch-site test of positive selection. Mol Biol Evol 2011;28:1217-28.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1217-1228
-
-
Yang, Z.1
Dos Reis, M.2
|