-
1
-
-
9744261123
-
Pneumococcal vaccines
-
World Health Organization. Pneumococcal vaccines. Weekly epidemiological record 78, 110-119 (2003).
-
(2003)
Weekly Epidemiological Record
, vol.78
, pp. 110-119
-
-
-
2
-
-
66249087654
-
Efficacy of pneumococcal vaccination in children younger than 24 months: A meta-analysis
-
Pavia, M., Bianco, A., Nobile, C. G., Marinelli, P. & Angelillo, I. F. Efficacy of pneumococcal vaccination in children younger than 24 months: a meta-analysis. Pediatrics 123, e1103-10 (2009).
-
(2009)
Pediatrics
, vol.123
, pp. e1103-e1110
-
-
Pavia, M.1
Bianco, A.2
Nobile, C.G.3
Marinelli, P.4
Angelillo, I.F.5
-
3
-
-
84925071077
-
Polysaccharide conjugate vaccine against pneumococcal pneumonia in adults
-
Bonten, M. J. et al. Polysaccharide conjugate vaccine against pneumococcal pneumonia in adults. N Engl J Med 372, 1114-25 (2015).
-
(2015)
N Engl J Med
, vol.372
, pp. 1114-1125
-
-
Bonten, M.J.1
-
4
-
-
0036534406
-
Reduction of nasopharyngeal carriage of Streptococcus pneumoniae after administration of a 9-valent pneumococcal conjugate vaccine to toddlers attending day care centers
-
Dagan, R. et al. Reduction of nasopharyngeal carriage of Streptococcus pneumoniae after administration of a 9-valent pneumococcal conjugate vaccine to toddlers attending day care centers. J Infect Dis 185, 927-36 (2002).
-
(2002)
J Infect Dis
, vol.185
, pp. 927-936
-
-
Dagan, R.1
-
5
-
-
79953679251
-
Carriage of Streptococcus pneumoniae 3 years after start of vaccination program, the Netherlands
-
Spijkerman, J. et al. Carriage of Streptococcus pneumoniae 3 years after start of vaccination program, the Netherlands. Emerg Infect Dis 17, 584-91 (2011).
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 584-591
-
-
Spijkerman, J.1
-
6
-
-
27244440305
-
Changing epidemiology of invasive pneumococcal disease among older adults in the era of pediatric pneumococcal conjugate vaccine
-
Lexau, C. A. et al. Changing epidemiology of invasive pneumococcal disease among older adults in the era of pediatric pneumococcal conjugate vaccine. JAMA 294, 2043-51 (2005).
-
(2005)
JAMA
, vol.294
, pp. 2043-2051
-
-
Lexau, C.A.1
-
7
-
-
80955181060
-
Herd immunity and serotype replacement 4 years after seven-valent pneumococcal conjugate vaccination in England and Wales: An observational cohort study
-
Miller, E., Andrews, N. J., Waight, P. A., Slack, M. P. & George, R. C. Herd immunity and serotype replacement 4 years after seven-valent pneumococcal conjugate vaccination in England and Wales: an observational cohort study. Lancet Infect Dis 11, 760-8 (2011).
-
(2011)
Lancet Infect Dis
, vol.11
, pp. 760-768
-
-
Miller, E.1
Andrews, N.J.2
Waight, P.A.3
Slack, M.P.4
George, R.C.5
-
8
-
-
80054093790
-
Serotype replacement in disease after pneumococcal vaccination
-
Weinberger, D. M., Malley, R. & Lipsitch, M. Serotype replacement in disease after pneumococcal vaccination. Lancet 378, 1962-73 (2011).
-
(2011)
Lancet
, vol.378
, pp. 1962-1973
-
-
Weinberger, D.M.1
Malley, R.2
Lipsitch, M.3
-
9
-
-
84555188726
-
Impact of more than a decade of pneumococcal conjugate vaccine use on carriage and invasive potential in Native American communities
-
Scott, J. R. et al. Impact of more than a decade of pneumococcal conjugate vaccine use on carriage and invasive potential in Native American communities. J Infect Dis 205, 280-8 (2012).
-
(2012)
J Infect Dis
, vol.205
, pp. 280-288
-
-
Scott, J.R.1
-
11
-
-
0038555738
-
Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clonespecific differences in invasive disease potential
-
Brueggemann, A. B. et al. Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clonespecific differences in invasive disease potential. J Infect Dis 187, 1424-32 (2003).
-
(2003)
J Infect Dis
, vol.187
, pp. 1424-1432
-
-
Brueggemann, A.B.1
-
12
-
-
1542357577
-
Effect of clonal and serotype-specific properties on the invasive capacity of Streptococcus pneumoniae
-
Sandgren, A. et al. Effect of clonal and serotype-specific properties on the invasive capacity of Streptococcus pneumoniae. J Infect Dis 189, 785-96 (2004).
-
(2004)
J Infect Dis
, vol.189
, pp. 785-796
-
-
Sandgren, A.1
-
13
-
-
0024991328
-
Interruption of capsule production in Streptococcus pneumonia serotype 3 by insertion of transposon Tn916
-
Watson, D. A. & Musher, D. M. Interruption of capsule production in Streptococcus pneumonia serotype 3 by insertion of transposon Tn916. Infect Immun 58, 3135-8 (1990).
-
(1990)
Infect Immun
, vol.58
, pp. 3135-3138
-
-
Watson, D.A.1
Musher, D.M.2
-
14
-
-
11144258643
-
Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland
-
Hanage, W. P. et al. Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland. Infect Immun 73, 431-5 (2005).
-
(2005)
Infect Immun
, vol.73
, pp. 431-435
-
-
Hanage, W.P.1
-
15
-
-
64449085206
-
Pattern of accessory regions and invasive disease potential in Streptococcus pneumoniae
-
Blomberg, C. et al. Pattern of accessory regions and invasive disease potential in Streptococcus pneumoniae. J Infect Dis 199, 1032-42 (2009).
-
(2009)
J Infect Dis
, vol.199
, pp. 1032-1042
-
-
Blomberg, C.1
-
16
-
-
84892661349
-
Intraclonal variations among Streptococcus pneumoniae isolates influence the likelihood of invasive disease in children
-
Browall, S. et al. Intraclonal variations among Streptococcus pneumoniae isolates influence the likelihood of invasive disease in children. J Infect Dis 209, 377-88 (2014).
-
(2014)
J Infect Dis
, vol.209
, pp. 377-388
-
-
Browall, S.1
-
17
-
-
84912022506
-
The role of ZmpC in the clinical manifestation of invasive pneumococcal disease
-
Cremers, A. J., Kokmeijer, I., Groh, L., de Jonge, M. I. & Ferwerda, G. The role of ZmpC in the clinical manifestation of invasive pneumococcal disease. Int J Med Microbiol (2014).
-
(2014)
Int J Med Microbiol
-
-
Cremers, A.J.1
Kokmeijer, I.2
Groh, L.3
De Jonge, M.I.4
Ferwerda, G.5
-
18
-
-
84887295186
-
Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection
-
Croucher, N. J. et al. Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection. PLoS Genet 9, e1003868 (2013).
-
(2013)
PLoS Genet
, vol.9
, pp. e1003868
-
-
Croucher, N.J.1
-
19
-
-
84892664127
-
Determinants of invasiveness beneath the capsule of the pneumococcus
-
Klugman, K. P., Bentley, S. D. & McGee, L. Determinants of invasiveness beneath the capsule of the pneumococcus. J Infect Dis 209, 321-2 (2014).
-
(2014)
J Infect Dis
, vol.209
, pp. 321-322
-
-
Klugman, K.P.1
Bentley, S.D.2
McGee, L.3
-
20
-
-
35348817329
-
Strain characteristics of Streptococcus pneumoniae carriage and invasive disease isolates during a clusterrandomized clinical trial of the 7-valent pneumococcal conjugate vaccine
-
Lipsitch, M. et al. Strain characteristics of Streptococcus pneumoniae carriage and invasive disease isolates during a clusterrandomized clinical trial of the 7-valent pneumococcal conjugate vaccine. J Infect Dis 196, 1221-7 (2007).
-
(2007)
J Infect Dis
, vol.196
, pp. 1221-1227
-
-
Lipsitch, M.1
-
21
-
-
19944428931
-
Molecular epidemiology of pneumococcal colonization in response to pneumococcal conjugate vaccination in children with recurrent acute otitis media
-
Bogaert, D. et al. Molecular epidemiology of pneumococcal colonization in response to pneumococcal conjugate vaccination in children with recurrent acute otitis media. J Clin Microbiol 43, 74-83 (2005).
-
(2005)
J Clin Microbiol
, vol.43
, pp. 74-83
-
-
Bogaert, D.1
-
22
-
-
84865413316
-
Serotype and clonal evolution of penicillin-nonsusceptible invasive Streptococcus pneumoniae in the 7-valent pneumococcal conjugate vaccine era in Italy
-
Gherardi, G. et al. Serotype and clonal evolution of penicillin-nonsusceptible invasive Streptococcus pneumoniae in the 7-valent pneumococcal conjugate vaccine era in Italy. Antimicrob Agents Chemother 56, 4965-8 (2012).
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 4965-4968
-
-
Gherardi, G.1
-
23
-
-
79954856398
-
Carried pneumococci in Massachusetts children: The contribution of clonal expansion and serotype switching
-
Hanage, W. P. et al. Carried pneumococci in Massachusetts children: the contribution of clonal expansion and serotype switching. Pediatr Infect Dis J 30, 302-8 (2011).
-
(2011)
Pediatr Infect Dis J
, vol.30
, pp. 302-308
-
-
Hanage, W.P.1
-
24
-
-
84925936528
-
Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction
-
Gladstone, R. A. et al. Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction. Vaccine 33, 2015-21 (2015).
-
(2015)
Vaccine
, vol.33
, pp. 2015-2021
-
-
Gladstone, R.A.1
-
25
-
-
84924907527
-
Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced
-
Chang, Q. et al. Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced. BMC Infect Dis 15, 68 (2015).
-
(2015)
BMC Infect Dis
, vol.15
, pp. 68
-
-
Chang, Q.1
-
26
-
-
84878735463
-
Population genomics of post-vaccine changes in pneumococcal epidemiology
-
Croucher, N. J. et al. Population genomics of post-vaccine changes in pneumococcal epidemiology. Nat Genet 45, 656-63 (2013).
-
(2013)
Nat Genet
, vol.45
, pp. 656-663
-
-
Croucher, N.J.1
-
29
-
-
84870485880
-
Changes in the composition of the pneumococcal population and in IPD incidence in the Netherlands after the implementation of the 7-valent pneumococcal conjugate vaccine
-
Elberse, K. E. et al. Changes in the composition of the pneumococcal population and in IPD incidence in The Netherlands after the implementation of the 7-valent pneumococcal conjugate vaccine. Vaccine 30, 7644-51 (2012).
-
(2012)
Vaccine
, vol.30
, pp. 7644-7651
-
-
Elberse, K.E.1
-
30
-
-
84867842044
-
Invasive pneumococcal disease and 7-valent pneumococcal conjugate vaccine, the Netherlands
-
van Deursen, A. M. et al. Invasive pneumococcal disease and 7-valent pneumococcal conjugate vaccine, the Netherlands. Emerg Infect Dis 18, 1729-37 (2012).
-
(2012)
Emerg Infect Dis
, vol.18
, pp. 1729-1737
-
-
Van Deursen, A.M.1
-
31
-
-
84901982172
-
Effects of 7-valent pneumococcal conjugate vaccine on the severity of adult bacteremic pneumococcal pneumonia
-
Cremers, A. J. et al. Effects of 7-valent pneumococcal conjugate vaccine on the severity of adult bacteremic pneumococcal pneumonia. Vaccine 32, 3989-94 (2014).
-
(2014)
Vaccine
, vol.32
, pp. 3989-3994
-
-
Cremers, A.J.1
-
32
-
-
84938815034
-
Vaccination drives changes in metabolic and virulence profiles of Streptococcus pneumoniae
-
Watkins, E. R. et al. Vaccination drives changes in metabolic and virulence profiles of Streptococcus pneumoniae. PLoS Pathog 11, e1005034 (2015).
-
(2015)
PLoS Pathog
, vol.11
, pp. e1005034
-
-
Watkins, E.R.1
-
33
-
-
18244388696
-
Multidrug resistance in Staphylococcus aureus due to overexpression of a novel multidrug and toxin extrusion (MATE) transport protein
-
Kaatz, G. W., McAleese, F. & Seo, S. M. Multidrug resistance in Staphylococcus aureus due to overexpression of a novel multidrug and toxin extrusion (MATE) transport protein. Antimicrob Agents Chemother 49, 1857-64 (2005).
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 1857-1864
-
-
Kaatz, G.W.1
McAleese, F.2
Seo, S.M.3
-
34
-
-
79960790187
-
The spectrum of pneumococcal empyema in adults in the early 21st century
-
Burgos, J. et al. The spectrum of pneumococcal empyema in adults in the early 21st century. Clin Infect Dis 53, 254-61 (2011).
-
(2011)
Clin Infect Dis
, vol.53
, pp. 254-261
-
-
Burgos, J.1
-
35
-
-
30744476257
-
Sequential multiplex PCR approach for determining capsular serotypes of Streptococcus pneumoniae isolates
-
Pai, R., Gertz, R. E. & Beall, B. Sequential multiplex PCR approach for determining capsular serotypes of Streptococcus pneumoniae isolates. J Clin Microbiol 44, 124-31 (2006).
-
(2006)
J Clin Microbiol
, vol.44
, pp. 124-131
-
-
Pai, R.1
Gertz, R.E.2
Beall, B.3
-
36
-
-
16844375774
-
A molecular-capsular-type prediction system for 90 Streptococcus pneumoniae serotypes using partial cpsA-cpsB sequencing and wzy- or wzx-specific PCR
-
Kong, F. et al. A molecular-capsular-type prediction system for 90 Streptococcus pneumoniae serotypes using partial cpsA-cpsB sequencing and wzy- or wzx-specific PCR. J Med Microbiol 54, 351-6 (2005).
-
(2005)
J Med Microbiol
, vol.54
, pp. 351-356
-
-
Kong, F.1
-
37
-
-
33645774644
-
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
-
Bentley, S. D. et al. Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet 2, e31 (2006).
-
(2006)
PLoS Genet
, vol.2
, pp. e31
-
-
Bentley, S.D.1
-
38
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D. R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18, 821-9 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
39
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
Boetzer, M., Henkel, C. V., Jansen, H. J., Butler, D. & Pirovano, W. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27, 578-9 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
40
-
-
84862591603
-
Toward almost closed genomes with GapFiller
-
Boetzer, M. & Pirovano, W. Toward almost closed genomes with GapFiller. Genome Biology 13, R56 (2012).
-
(2012)
Genome Biology
, vol.13
, pp. R56
-
-
Boetzer, M.1
Pirovano, W.2
-
41
-
-
84901417347
-
Prokka: Rapid prokaryotic genome annotation
-
Seemann, T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-9 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
42
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A. J., Van Dongen, S. & Ouzounis, C. A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30, 1575-84 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
43
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-7 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
44
-
-
0043123111
-
RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
-
Wernersson, R. & Pedersen, A. G. RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res 31, 3537-9 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3537-3539
-
-
Wernersson, R.1
Pedersen, A.G.2
-
45
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., Ludwig, T. & Meier, H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21, 456-63 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
46
-
-
70049114381
-
Identifying currents in the gene pool for bacterial populations using an integrative approach
-
Tang, J., Hanage, W. P., Fraser, C. & Corander, J. Identifying currents in the gene pool for bacterial populations using an integrative approach. PLoS Computational Biology 5, e1000455 (2009).
-
(2009)
PLoS Computational Biology
, vol.5
, pp. e1000455
-
-
Tang, J.1
Hanage, W.P.2
Fraser, C.3
Corander, J.4
-
47
-
-
79960004119
-
Interactive tree of life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic, I. & Bork, P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39, W475-8 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
48
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
Darling, A. C., Mau, B., Blattner, F. R. & Perna, N. T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14, 1394-403 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
49
-
-
56649123520
-
Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database
-
Carver, T. et al. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24, 2672-6 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
-
50
-
-
2342492364
-
The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise
-
Dutilh, B. E., Huynen, M. A., Bruno, W. J. & Snel, B. The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. Journal of Molecular Evolution 58, 527-39 (2004).
-
(2004)
Journal of Molecular Evolution
, vol.58
, pp. 527-539
-
-
Dutilh, B.E.1
Huynen, M.A.2
Bruno, W.J.3
Snel, B.4
|