-
1
-
-
0014649230
-
Biochemical Systems analysis I. Some mathematical properties of the law for the component enzymatic reactions
-
Savageau M.A., Biochemical systems analysis I. Some mathematical properties of the law for the component enzymatic reactions. J. Theor. Biol. 1969, 25:365-369.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 365-369
-
-
Savageau, M.A.1
-
2
-
-
0014658880
-
Biochemical systems analysis II. The steady-state solutions for an n-pool systems using a power-law approximation
-
Savageau M.A. Biochemical systems analysis II. The steady-state solutions for an n-pool systems using a power-law approximation. J. Theor. Biol. 1969, 25:370-379.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 370-379
-
-
Savageau, M.A.1
-
5
-
-
0015989446
-
A linear steady-state treatment of enzymatic chains
-
Heinrich R., Rapoport T. A linear steady-state treatment of enzymatic chains. Eur. J. Biochem. 1974, 42:89-95.
-
(1974)
Eur. J. Biochem.
, vol.42
, pp. 89-95
-
-
Heinrich, R.1
Rapoport, T.2
-
6
-
-
70350136377
-
A single nutrient feed supports both chemically defined NS0 and CHO fed-batch processes: improved productivity and lactate metabolism
-
Ma N.N., Ellet J., Okediadi C., Hermes P., McCormick E., Casnocha S. A single nutrient feed supports both chemically defined NS0 and CHO fed-batch processes: improved productivity and lactate metabolism. Biotechnol. Prog. 2009, 25:1353-1363.
-
(2009)
Biotechnol. Prog.
, vol.25
, pp. 1353-1363
-
-
Ma, N.N.1
Ellet, J.2
Okediadi, C.3
Hermes, P.4
McCormick, E.5
Casnocha, S.6
-
7
-
-
84858000888
-
On metabolic shift to lactate consumption in fed-batch culture of mammalian cells
-
Mulukutla B.C., Gramer M., Hu W.S. On metabolic shift to lactate consumption in fed-batch culture of mammalian cells. Metab. Eng. 2012, 14:138-149.
-
(2012)
Metab. Eng.
, vol.14
, pp. 138-149
-
-
Mulukutla, B.C.1
Gramer, M.2
Hu, W.S.3
-
8
-
-
34948834828
-
Proteome analysis of anti body-producing CHO cell lines with different metabolic profiles
-
Pascoe D.E., Arnott D., Papoutsakis E.T., Miller W.M., Anderseni D.C. Proteome analysis of anti body-producing CHO cell lines with different metabolic profiles. Biotechnol. Bioeng. 2007, 98:391-410.
-
(2007)
Biotechnol. Bioeng.
, vol.98
, pp. 391-410
-
-
Pascoe, D.E.1
Arnott, D.2
Papoutsakis, E.T.3
Miller, W.M.4
Anderseni, D.C.5
-
9
-
-
33748465152
-
Isochron-based phase response analysis of circadian rhythms
-
Gunawan R., Doyle F.J. Isochron-based phase response analysis of circadian rhythms. Biophys. J. 2006, 91:2131-2141.
-
(2006)
Biophys. J.
, vol.91
, pp. 2131-2141
-
-
Gunawan, R.1
Doyle, F.J.2
-
10
-
-
79952564075
-
Understanding dynamics using sensitivity analysis: caveat and solution
-
Perumal T.M., Gunawan R. Understanding dynamics using sensitivity analysis: caveat and solution. BMC Syst. Biol. 2011, 5:41.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 41
-
-
Perumal, T.M.1
Gunawan, R.2
-
11
-
-
84901951318
-
PathPSA: a dynamical pathway-based parametric sensitivity analysis
-
Perumal T.M., Gunawan R. pathPSA: a dynamical pathway-based parametric sensitivity analysis. Ind. Eng. Chem. Res. 2014, 53:9149-9157.
-
(2014)
Ind. Eng. Chem. Res.
, vol.53
, pp. 9149-9157
-
-
Perumal, T.M.1
Gunawan, R.2
-
12
-
-
70349771775
-
Dynamical analysis of cellular networks based on the Green's function matrix
-
Perumal T.M., Wu Y., Gunawan R. Dynamical analysis of cellular networks based on the Green's function matrix. J. Theor. Biol. 2009, 261:248-259.
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 248-259
-
-
Perumal, T.M.1
Wu, Y.2
Gunawan, R.3
-
13
-
-
84858736880
-
Sensitivity analysis approaches applied to systems biology models
-
Zi Z. Sensitivity analysis approaches applied to systems biology models. IET Syst. Biol. 2011, 5:336-346.
-
(2011)
IET Syst. Biol.
, vol.5
, pp. 336-346
-
-
Zi, Z.1
-
14
-
-
13844253731
-
An efficient method for calculation of dynamic logarithmic gains in biochemical systems theory
-
Shiraishi F., Hatoh Y., Irie T. An efficient method for calculation of dynamic logarithmic gains in biochemical systems theory. J. Theor. Biol. 2005, 234:79-85.
-
(2005)
J. Theor. Biol.
, vol.234
, pp. 79-85
-
-
Shiraishi, F.1
Hatoh, Y.2
Irie, T.3
-
15
-
-
33644910971
-
Corrigendum to "An efficient method for calculation of dynamic logarithmic gains in biochemical systems theory"
-
Shiraishi F., Hatoh Y., Irie T. Corrigendum to "An efficient method for calculation of dynamic logarithmic gains in biochemical systems theory". J. Theor. Biol. 2006, 239:398-399.
-
(2006)
J. Theor. Biol.
, vol.239
, pp. 398-399
-
-
Shiraishi, F.1
Hatoh, Y.2
Irie, T.3
-
16
-
-
0026470975
-
The tricarboxylic acid cycle in Dictyostelium discoideum: II. Evaluation of model consistency and robustness
-
Shiraishi F., Savageau M.A. The tricarboxylic acid cycle in Dictyostelium discoideum: II. Evaluation of model consistency and robustness. J. Biol. Chem. 1992, 267:22919-22925.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22919-22925
-
-
Shiraishi, F.1
Savageau, M.A.2
-
17
-
-
0027321318
-
The tricarboxylic acid cycle in Dictyostelium discoideum: systemic effects of including protein turnover in the current model
-
Shiraishi F., Savageau M.A. The tricarboxylic acid cycle in Dictyostelium discoideum: systemic effects of including protein turnover in the current model. J. Biol. Chem. 1993, 268:16917-16928.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 16917-16928
-
-
Shiraishi, F.1
Savageau, M.A.2
-
18
-
-
70450223697
-
A reliable Taylor-based computational method for the calculation of dynamic sensitivities in large-scale metabolic reaction systems: algorithm and software evaluation
-
Shiraishi F., Tomita T., Iwata M., Berrada A., Hirayama H. A reliable Taylor-based computational method for the calculation of dynamic sensitivities in large-scale metabolic reaction systems: algorithm and software evaluation. Math. Biosci. 2009, 222:73-85.
-
(2009)
Math. Biosci.
, vol.222
, pp. 73-85
-
-
Shiraishi, F.1
Tomita, T.2
Iwata, M.3
Berrada, A.4
Hirayama, H.5
-
19
-
-
34547122015
-
A simple and highly accurate numerical differentiation method for sensitivity analysis of large-scale metabolic reaction systems
-
Shiraishi F., Furuta S., Ishimatsu T., Akhter J. A simple and highly accurate numerical differentiation method for sensitivity analysis of large-scale metabolic reaction systems. Math. Biosci. 2007, 208:590-606.
-
(2007)
Math. Biosci.
, vol.208
, pp. 590-606
-
-
Shiraishi, F.1
Furuta, S.2
Ishimatsu, T.3
Akhter, J.4
-
20
-
-
61649128378
-
Solving ordinary differential equations by Taylor series
-
Hirayama H., Komiya S., Satou S. Solving ordinary differential equations by Taylor series. JSIAM 2002, 12:1-8.
-
(2002)
JSIAM
, vol.12
, pp. 1-8
-
-
Hirayama, H.1
Komiya, S.2
Satou, S.3
-
21
-
-
85024262559
-
Numerical solution of the two-point boundary value problem by the combined Taylor series method with a technique for rapidly selecting suitable stepsizes
-
Shiraishi F., Hasegawa T., Nagasue H. Numerical solution of the two-point boundary value problem by the combined Taylor series method with a technique for rapidly selecting suitable stepsizes. J. Chem. Eng. Jpn. 1995, 28:306-315.
-
(1995)
J. Chem. Eng. Jpn.
, vol.28
, pp. 306-315
-
-
Shiraishi, F.1
Hasegawa, T.2
Nagasue, H.3
-
22
-
-
0035880281
-
Highly accurate solution of the axial dispersion model expressed in S-system canonical form by Taylor-series method
-
Shiraishi F. Highly accurate solution of the axial dispersion model expressed in S-system canonical form by Taylor-series method. Chem. Eng. J. 2001, 83:175-183.
-
(2001)
Chem. Eng. J.
, vol.83
, pp. 175-183
-
-
Shiraishi, F.1
-
23
-
-
0037170719
-
A Taylor-series solution in Cartesian space to GMA-system equations and its application to initial-value problems
-
Shiraishi F., Takeuchi H., Hasegawa T., Nagasue H. A Taylor-series solution in Cartesian space to GMA-system equations and its application to initial-value problems. Appl. Math. Comput. 2002, 127:103-123.
-
(2002)
Appl. Math. Comput.
, vol.127
, pp. 103-123
-
-
Shiraishi, F.1
Takeuchi, H.2
Hasegawa, T.3
Nagasue, H.4
-
24
-
-
0032935991
-
A highly accurate numerical method for calculating apparent kinetic parameters of immobilized enzyme reactions: 1. Theory
-
Miyakawa H., Nagasue H., Shiraishi F. A highly accurate numerical method for calculating apparent kinetic parameters of immobilized enzyme reactions: 1. Theory. Biochem. Eng. J. 1999, 3:91-101.
-
(1999)
Biochem. Eng. J.
, vol.3
, pp. 91-101
-
-
Miyakawa, H.1
Nagasue, H.2
Shiraishi, F.3
-
25
-
-
79961126416
-
Highly accurate computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method
-
Shiraishi F., Egashira M., Iwata M. Highly accurate computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method. Math. Biosci. 2011, 233:59-67.
-
(2011)
Math. Biosci.
, vol.233
, pp. 59-67
-
-
Shiraishi, F.1
Egashira, M.2
Iwata, M.3
-
26
-
-
84858862408
-
Highly reliable computation of dynamic sensitivities in metabolic reaction systems by a variable-step Taylor series method
-
Shiraishi F., Egashira M., Iwata M., Sriyudthsak K., Hattori K. Highly reliable computation of dynamic sensitivities in metabolic reaction systems by a variable-step Taylor series method. Asia-Pac. J. Chem. Eng. 2012, 7:S32-S38.
-
(2012)
Asia-Pac. J. Chem. Eng.
, vol.7
, pp. S32-S38
-
-
Shiraishi, F.1
Egashira, M.2
Iwata, M.3
Sriyudthsak, K.4
Hattori, K.5
-
27
-
-
0026470976
-
The tricarboxylic acid cycle in Dictyostelium discoideum: III. Analysis of steady-state and dynamic behavior
-
Shiraishi F., Savageau M.A. The tricarboxylic acid cycle in Dictyostelium discoideum: III. Analysis of steady-state and dynamic behavior. J. Biol. Chem. 1992, 267:22926-22933.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22926-22933
-
-
Shiraishi, F.1
Savageau, M.A.2
-
28
-
-
0004151462
-
Computational Analysis of Biochemical Systems: A Practical Guide for Biochemists and Molecular Biologists
-
Cambridge University Press, Cambridge, U.K.
-
Voit E.O. Computational Analysis of Biochemical Systems: A Practical Guide for Biochemists and Molecular Biologists 2000, Cambridge University Press, Cambridge, U.K.
-
(2000)
-
-
Voit, E.O.1
-
29
-
-
77957665198
-
Investigation of the performance of fermentation processes using a mathematical model including effects of metabolic bottleneck and toxic product on cells
-
Sriyudthsak K., Shiraishi F. Investigation of the performance of fermentation processes using a mathematical model including effects of metabolic bottleneck and toxic product on cells. Math. Biosci. 2010, 228:1-9.
-
(2010)
Math. Biosci.
, vol.228
, pp. 1-9
-
-
Sriyudthsak, K.1
Shiraishi, F.2
-
30
-
-
0029014154
-
Two paradigms of metabolic engineering applied to amino acid biosynthesis
-
Simpson T.W., Colon G.E., Stephanopoulos G.N. Two paradigms of metabolic engineering applied to amino acid biosynthesis. Biochem. Soc. Trans. 1995, 23:381-387.
-
(1995)
Biochem. Soc. Trans.
, vol.23
, pp. 381-387
-
-
Simpson, T.W.1
Colon, G.E.2
Stephanopoulos, G.N.3
-
32
-
-
0031214696
-
Flux amplification in complex metabolic networks
-
Stephanopoulos G.N., Simpson T.W. Flux amplification in complex metabolic networks. Chem. Eng. Sci. 1997, 52:2607-2627.
-
(1997)
Chem. Eng. Sci.
, vol.52
, pp. 2607-2627
-
-
Stephanopoulos, G.N.1
Simpson, T.W.2
-
33
-
-
0025400371
-
Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae
-
Galazzo J.L., Bailey J.E. Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae. Enzym. Microb. Technol. 1990, 12:162-172.
-
(1990)
Enzym. Microb. Technol.
, vol.12
, pp. 162-172
-
-
Galazzo, J.L.1
Bailey, J.E.2
-
34
-
-
0025809157
-
Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae, Errata
-
Galazzo J.L., Bailey J.E. Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae, Errata. Enzym. Microb. Technol. 1991, 13:363.
-
(1991)
Enzym. Microb. Technol.
, vol.13
, pp. 363
-
-
Galazzo, J.L.1
Bailey, J.E.2
-
35
-
-
0031214207
-
Dynamic sensitivity analysis for metabolic systems
-
Mauch K., Arnold S., Reuss M. Dynamic sensitivity analysis for metabolic systems. Chem. Eng. Sci. 1997, 52:2589-2598.
-
(1997)
Chem. Eng. Sci.
, vol.52
, pp. 2589-2598
-
-
Mauch, K.1
Arnold, S.2
Reuss, M.3
-
38
-
-
77749337515
-
Instantaneous and overall indicators for determination of bottleneck ranking in metabolic reaction networks
-
Sriyudthsak K., Shiraishi F. Instantaneous and overall indicators for determination of bottleneck ranking in metabolic reaction networks. Ind. Eng. Chem. Res. 2010, 49:2122-2129.
-
(2010)
Ind. Eng. Chem. Res.
, vol.49
, pp. 2122-2129
-
-
Sriyudthsak, K.1
Shiraishi, F.2
-
39
-
-
61649101765
-
Method for determination of the main bottleneck enzyme in a metabolic reaction network by dynamic sensitivity analysis
-
Shiraishi F., Suzuki Y. Method for determination of the main bottleneck enzyme in a metabolic reaction network by dynamic sensitivity analysis. Ind. Eng. Chem. Res. 2010, 48:415-423.
-
(2010)
Ind. Eng. Chem. Res.
, vol.48
, pp. 415-423
-
-
Shiraishi, F.1
Suzuki, Y.2
-
40
-
-
77957984539
-
Selection of best indicators for ranking and determination of bottleneck enzymes in metabolic reaction systems
-
Sriyudthsak K., Shiraishi F. Selection of best indicators for ranking and determination of bottleneck enzymes in metabolic reaction systems. Ind. Eng. Chem. Res. 2010, 49:9738-9742.
-
(2010)
Ind. Eng. Chem. Res.
, vol.49
, pp. 9738-9742
-
-
Sriyudthsak, K.1
Shiraishi, F.2
-
41
-
-
77956011664
-
Identification of bottleneck enzymes with negative dynamic sensitivities: ethanol fermentation systems as case studies
-
Sriyudthsak K., Shiraishi F. Identification of bottleneck enzymes with negative dynamic sensitivities: ethanol fermentation systems as case studies. J. Biotechnol. 2010, 149:191-200.
-
(2010)
J. Biotechnol.
, vol.149
, pp. 191-200
-
-
Sriyudthsak, K.1
Shiraishi, F.2
-
42
-
-
0015173025
-
Oscillatory phenomena in biochemistry
-
Hess B., Boiteaux A. Oscillatory phenomena in biochemistry. Annu. Rev. Biochem. 1971, 40:237-258.
-
(1971)
Annu. Rev. Biochem.
, vol.40
, pp. 237-258
-
-
Hess, B.1
Boiteaux, A.2
-
43
-
-
0038699639
-
Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis
-
Voit E.O. Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis. J. Theor. Biol. 2003, 223:55-78.
-
(2003)
J. Theor. Biol.
, vol.223
, pp. 55-78
-
-
Voit, E.O.1
-
44
-
-
27744506402
-
Amplified expression of fructose 1,6-bisphosphatase in Corynebacterium glutamicum increases in vivo flux through the pentose phosphate pathway and lysine production on different carbon sources
-
Becker J., Klopprogge C., Zelder O., Heinzle E., Wittmann C. Amplified expression of fructose 1,6-bisphosphatase in Corynebacterium glutamicum increases in vivo flux through the pentose phosphate pathway and lysine production on different carbon sources. Appl. Environ. Microbiol. 2005, 71:8587-8596.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8587-8596
-
-
Becker, J.1
Klopprogge, C.2
Zelder, O.3
Heinzle, E.4
Wittmann, C.5
|