메뉴 건너뛰기




Volumn 290, Issue 41, 2015, Pages 24902-24913

Structural basis for the discriminative recognition of N6-Methyladenosine RNA by the human YT521-B homology domain family of proteins

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BINS; NUCLEOTIDES; RNA; YEAST;

EID: 84943742618     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M115.680389     Document Type: Article
Times cited : (224)

References (50)
  • 1
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 2
    • 84892763878 scopus 로고    scopus 로고
    • Reversing DNA methylation: Mechanisms, genomics, and biological functions
    • Wu, H., and Zhang, Y. (2014) Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156, 45-68
    • (2014) Cell , vol.156 , pp. 45-68
    • Wu, H.1    Zhang, Y.2
  • 6
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis ofmRNA methylation reveals enrichment in 3' UTRs and near stop codons
    • Meyer, K. D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C. E., and Jaffrey, S. R. (2012) Comprehensive analysis ofmRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149, 1635-1646
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.E.5    Jaffrey, S.R.6
  • 9
    • 0016712078 scopus 로고
    • The methylation state of poly A-containing messenger RNA from cultured hamster cells
    • Dubin, D. T., and Taylor, R. H. (1975) The methylation state of poly A-containing messenger RNA from cultured hamster cells. Nucleic Acids Res. 2, 1653-1668
    • (1975) Nucleic Acids Res. , vol.2 , pp. 1653-1668
    • Dubin, D.T.1    Taylor, R.H.2
  • 10
    • 0016770156 scopus 로고
    • Methylated nucleotides block 5' terminus of HeLa cell messenger RNA
    • Wei, C. M., Gershowitz, A., and Moss, B. (1975) Methylated nucleotides block 5' terminus of HeLa cell messenger RNA. Cell 4, 379-386
    • (1975) Cell , vol.4 , pp. 379-386
    • Wei, C.M.1    Gershowitz, A.2    Moss, B.3
  • 11
    • 0016809932 scopus 로고
    • The methylated constituents of L cell messenger RNA: Evidence for an unusual cluster at the 5' terminus
    • Perry, R. P., Kelley, D. E., Friderici, K., and Rottman, F. (1975) The methylated constituents of L cell messenger RNA: evidence for an unusual cluster at the 5' terminus. Cell 4, 387-394
    • (1975) Cell , vol.4 , pp. 387-394
    • Perry, R.P.1    Kelley, D.E.2    Friderici, K.3    Rottman, F.4
  • 21
    • 84892164576 scopus 로고    scopus 로고
    • A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae
    • Kang, H. J., Jeong, S. J., Kim, K. N., Baek, I. J., Chang, M., Kang, C. M., Park, Y. S., and Yun, C. W. (2014) A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae. Biochem. J. 457, 391-400
    • (2014) Biochem. J. , vol.457 , pp. 391-400
    • Kang, H.J.1    Jeong, S.J.2    Kim, K.N.3    Baek, I.J.4    Chang, M.5    Kang, C.M.6    Park, Y.S.7    Yun, C.W.8
  • 23
    • 84907235997 scopus 로고    scopus 로고
    • Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain
    • Luo, S., and Tong, L. (2014) Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain. Proc. Natl. Acad. Sci. U. S. A. 111, 13834-13839
    • (2014) Proc. Natl. Acad. Sci. U. S. A. , vol.111 , pp. 13834-13839
    • Luo, S.1    Tong, L.2
  • 27
    • 84878944044 scopus 로고    scopus 로고
    • Readout of epigenetic modifications
    • Patel, D. J., and Wang, Z. (2013) Readout of epigenetic modifications. Annu. Rev. Biochem. 82, 81-118
    • (2013) Annu. Rev. Biochem. , vol.82 , pp. 81-118
    • Patel, D.J.1    Wang, Z.2
  • 30
    • 0037208360 scopus 로고    scopus 로고
    • An overview of the CCP4 project in protein crystallography: An example of a collaborative project
    • Winn, M. D. (2003) An overview of the CCP4 project in protein crystallography: an example of a collaborative project. J. Synchrotron Radiat. 10, 23-25
    • (2003) J. Synchrotron Radiat. , vol.10 , pp. 23-25
    • Winn, M.D.1
  • 38
    • 77950798648 scopus 로고    scopus 로고
    • Recent developments in classical density modification
    • Cowtan, K. (2010) Recent developments in classical density modification. Acta Crystallogr. D Biol. Crystallogr. 66, 470-478
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.66 , pp. 470-478
    • Cowtan, K.1
  • 39
    • 33748337934 scopus 로고    scopus 로고
    • The Buccaneer software for automated model building: 1. Tracing protein chains
    • Cowtan, K. (2006) The Buccaneer software for automated model building: 1. tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62, 1002-1011
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 1002-1011
    • Cowtan, K.1
  • 41
    • 0030809260 scopus 로고    scopus 로고
    • WARP: Improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models
    • Perrakis, A., Sixma, T. K., Wilson, K. S., and Lamzin, V. S. (1997) wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. Acta Crystallogr. D Biol. Crystallogr. 53, 448-455
    • (1997) Acta Crystallogr. D Biol. Crystallogr. , vol.53 , pp. 448-455
    • Perrakis, A.1    Sixma, T.K.2    Wilson, K.S.3    Lamzin, V.S.4
  • 42
    • 50249136103 scopus 로고    scopus 로고
    • Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
    • Langer, G., Cohen, S. X., Lamzin, V. S., and Perrakis, A. (2008) Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat. Protoc. 3, 1171-1179
    • (2008) Nat. Protoc. , vol.3 , pp. 1171-1179
    • Langer, G.1    Cohen, S.X.2    Lamzin, V.S.3    Perrakis, A.4
  • 43
    • 0017367836 scopus 로고
    • 6-methyladenosine sites of HeLa cell messenger ribonucleic acid
    • 6-methyladenosine sites of HeLa cell messenger ribonucleic acid. Biochemistry 16, 1672-1676
    • (1977) Biochemistry , vol.16 , pp. 1672-1676
    • Wei, C.M.1    Moss, B.2
  • 44
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 45
    • 0036019716 scopus 로고    scopus 로고
    • Comparison of the acid-base properties of purine derivatives in aqueous solution. Determination of intrinsic proton affinities of various basic sites
    • Kampf, G., Kapinos, L. E., Griesser, R., Lippert, B., and Sigel, H. (2002) Comparison of the acid-base properties of purine derivatives in aqueous solution. Determination of intrinsic proton affinities of various basic sites. J. Chem. Soc. Perkin Trans. 2, 1320-1327
    • (2002) J. Chem. Soc. Perkin Trans. , vol.2 , pp. 1320-1327
    • Kampf, G.1    Kapinos, L.E.2    Griesser, R.3    Lippert, B.4    Sigel, H.5
  • 46
    • 3242887315 scopus 로고    scopus 로고
    • FATCAT: A web server for flexible structure comparison and structure similarity searching
    • Ye, Y., and Godzik, A. (2004) FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 32, W582-W585
    • (2004) Nucleic Acids Res. , vol.32 , pp. W582-W585
    • Ye, Y.1    Godzik, A.2
  • 49
    • 84875530060 scopus 로고    scopus 로고
    • 6-Methyl-adenosine modification in messenger and long non-coding RNA
    • 6-Methyl-adenosine modification in messenger and long non-coding RNA. Trends Biochem. Sci. 38, 204-209
    • (2013) Trends Biochem. Sci. , vol.38 , pp. 204-209
    • Pan, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.