A rare allele of GS2 enhances grain size and grain yield in rice

Molecular Plant

Volumn 8, Issue 10, 2015, Pages 1455-1465

  Hu, Jiang ^a   Wang, Yuexing ^a   Fang, Yunxia ^a   Zeng, Longjun ^b   Xu, Jie ^a   Yu, Haiping ^a   Shi, Zhenyuan ^a   Pan, Jiangjie ^a   Zhang, Dong ^a   Kang, Shujing ^b   Zhu, Li ^a   Dong, Guojun ^a   Guo, Longbiao ^a   Zeng, Dali ^a   Zhang, Guangheng ^a   Xie, Lihong ^a   Xiong, Guosheng ^b   Li, Jiayang ^c   Qian, Qian ^a,b  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

grain size; GS2; miR396c; OsGRF4; QTL; rice

Indexed keywords

VEGETABLE PROTEIN;

ALLELE; FOOD GRAIN; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; ORYZA; QUANTITATIVE TRAIT LOCUS;

ALLELES; EDIBLE GRAIN; GENE EXPRESSION REGULATION, PLANT; ORYZA; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI;

EID: 84943448765     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1016/j.molp.2015.07.002     Document Type: Article

References (36)

1. M. Baucher, J. Moussawi, O.M. Vandeputte, D. Monteyne, A. Mol, D. Perez-Morga, and M. El Jaziri A role for the miR396/GRF network in specification of organ type during flower development, as supported by ectopic expression of Populus trichocarpa miR396c in transgenic tobacco Plant Biol. 15 2013 892 898
2. Y. Chen, Y. Xu, W. Luo, W. Li, N. Chen, D. Zhang, and K. Chong The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice Plant Physiol. 163 2013 1673 1685
3. D. Choi, J.H. Kim, and H. Kende Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.) Plant Cell Physiol. 45 2004 897 904
4. J.M. Debernardi, R.E. Rodriguez, M.A. Mecchia, and J.F. Palatnik Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions PLoS Genet. 8 2012 e1002419
5. P. Duan, Y. Rao, D. Zeng, Y. Yang, R. Xu, B. Zhang, G. Dong, Q. Qian, and Y. Li SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice Plant J. 77 2014 547 557
6. C. Fan, Y. Xing, H. Mao, T. Lu, B. Han, C. Xu, X. Li, and Q. Zhang GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein Theor. Appl. Genet. 112 2006 1164 1171
7. B. Ha Lee, and J. Hoe Kim Spatio-temporal distribution patterns of GRF-INTERACTING FACTOR expression and leaf size control Plant Signal. Behav. 9 2014 e29697
8. T. Hewezi, T.R. Maier, D. Nettleton, and T.J. Baum The Arabidopsis microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection Plant Physiol. 159 2012 321 335
9. G. Horiguchi, G.T. Kim, and H. Tsukaya The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana Plant J. 43 2005 68 78
10. K. Ishimaru, N. Hirotsu, Y. Madoka, N. Murakami, N. Hara, H. Onodera, T. Kashiwagi, K. Ujiie, B. Shimizu, A. Onishi, and et al. Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield Nat. Genet. 45 2013 707 711
11. Y. Jiao, Y. Wang, D. Xue, J. Wang, M. Yan, G. Liu, G. Dong, D. Zeng, Z. Lu, X. Zhu, and et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice Nat. Genet. 42 2010 541 544
12. J.H. Kim, and H. Kende A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis Proc. Natl. Acad. Sci. USA 101 2004 13374 13379
13. J.H. Kim, D. Choi, and H. Kende The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis Plant J. 36 2003 94 104
14. S.J. Kuijt, R. Greco, A. Agalou, J. Shao, C.C. 't Hoen, E. Overnas, M. Osnato, S. Curiale, D. Meynard, R. van Gulik, and et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors Plant Physiol. 164 2014 1952 1966
15. B.H. Lee, J.H. Ko, S. Lee, Y. Lee, J.H. Pak, and J.H. Kim The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties Plant Physiol. 151 2009 655 668
16. Y. Li, C. Fan, Y. Xing, Y. Jiang, L. Luo, L. Sun, D. Shao, C. Xu, X. Li, J. Xiao, and et al. Natural variation in GS5 plays an important role in regulating grain size and yield in rice Nat. Genet. 43 2011 1266 1269
17. G. Liang, H. He, Y. Li, F. Wang, and D. Yu Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis Plant Physiol. 164 2014 249 258
18. D. Liu, Y. Song, Z. Chen, and D. Yu Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis Physiol. Plant. 136 2009 223 236
19. J. Liu, W. Hua, H.L. Yang, G.M. Zhan, R.J. Li, L.B. Deng, X.F. Wang, G.H. Liu, and H.Z. Wang The BnGRF2 gene (GRF2-like gene from Brassica napus) enhances seed oil production through regulating cell number and plant photosynthesis J. Exp. Bot. 63 2012 3727 3740
20. H. Liu, S. Guo, Y. Xu, C. Li, Z. Zhang, D. Zhang, S. Xu, C. Zhang, and K. Chong OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4 Plant Physiol. 165 2014 160 174
21. H. Mao, S. Sun, J. Yao, C. Wang, S. Yu, C. Xu, X. Li, and Q. Zhang Linking differential domain functions of the GS3 protein to natural variation of grain size in rice Proc. Natl. Acad. Sci. USA 107 2010 19579 19584
22. M.A. Omidbakhshfard, S. Proost, U. Fujikura, and B. Mueller-Roeber Growth-Regulating Factors (GRFs): a small transcription factor family with important functions in plant biology Mol. Plant 8 2015 998 1010
23. P. Qi, Y.S. Lin, X.J. Song, J.B. Shen, W. Huang, J.X. Shan, M.Z. Zhu, L. Jiang, J.P. Gao, and H.X. Lin The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3 Cell Res. 22 2012 1666 1680
24. R.E. Rodriguez, M.A. Mecchia, J.M. Debernardi, C. Schommer, D. Weigel, and J.F. Palatnik Control of cell proliferation in Arabidopsis thaliana by microRNA miR396 Development 137 2010 103 112
25. A. Shomura, T. Izawa, K. Ebana, T. Ebitani, H. Kanegae, S. Konishi, and M. Yano Deletion in a gene associated with grain size increased yields during rice domestication Nat. Genet. 40 2008 1023 1028
26. X.J. Song, W. Huang, M. Shi, M.Z. Zhu, and H.X. Lin A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase Nat. Genet. 39 2007 623 630
27. X.J. Song, T. Kuroha, M. Ayano, T. Furuta, K. Nagai, N. Komeda, S. Segami, K. Miura, D. Ogawa, T. Kamura, and et al. Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice Proc. Natl. Acad. Sci. USA 112 2015 76 81
28. Z. Tian, Q. Qian, Q. Liu, M. Yan, X. Liu, C. Yan, G. Liu, Z. Gao, S. Tang, D. Zeng, and et al. Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities Proc. Natl. Acad. Sci. USA 106 2009 21760 21765
29. Z. Tian, C. Yan, Q. Qian, S. Yan, H. Xie, F. Wang, J. Xu, G. Liu, Y. Wang, Q. Liu, and et al. Development of gene-tagged molecular markers for starch synthesis-related genes in rice Chin. Sci. Bull. 55 2010 3768 3777
30. E. Wang, J. Wang, X. Zhu, W. Hao, L. Wang, Q. Li, L. Zhang, W. He, B. Lu, H. Lin, and et al. Control of rice grain-filling and yield by a gene with a potential signature of domestication Nat. Genet. 40 2008 1370 1374
31. L. Wang, X. Gu, D. Xu, W. Wang, H. Wang, M. Zeng, Z. Chang, H. Huang, and X. Cui miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis J. Exp. Bot. 62 2011 761 773
32. S. Wang, K. Wu, Q. Yuan, X. Liu, Z. Liu, X. Lin, R. Zeng, H. Zhu, G. Dong, Q. Qian, and et al. Control of grain size, shape and quality by OsSPL16 in rice Nat. Genet. 44 2012 950 954
33. J. Weng, S. Gu, X. Wan, H. Gao, T. Guo, N. Su, C. Lei, X. Zhang, Z. Cheng, X. Guo, and et al. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight Cell Res. 18 2008 1199 1209
34. F. Xu, J. Fang, S. Ou, S. Gao, F. Zhang, L. Du, Y. Xiao, H. Wang, X. Sun, J. Chu, and et al. Variations in CYP78A13 coding region influence grain size and yield in rice Plant Cell Environ. 38 2014 800 811
35. X. Zhang, J. Wang, J. Huang, H. Lan, C. Wang, C. Yin, Y. Wu, H. Tang, Q. Qian, J. Li, and et al. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice Proc. Natl. Acad. Sci. USA 109 2012 21534 21539
36. J. Zuo, and J. Li Molecular genetic dissection of quantitative trait loci regulating rice grain size Annu. Rev. Genet. 48 2014 99 118