Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.)

Plant and Cell Physiology

Volumn 45, Issue 7, 2004, Pages 897-904

  Choi, Dongsu ^a   Jeong, Hoe Kim ^a   Kende, Hans ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Gibberellin; In situ hybridization; Oryza sativa; Transcription activation

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; PHYTOHORMONE; TRANSACTIVATOR PROTEIN; VEGETABLE PROTEIN;

ARTICLE; GENE EXPRESSION REGULATION; GENETICS; GENOME; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN TERTIARY STRUCTURE; RICE; SEQUENCE HOMOLOGY; TRANSACTIVATION;

DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANS-ACTIVATION (GENETICS); TRANS-ACTIVATORS;

EMBRYOPHYTA; ORYZA SATIVA;

EID: 4344671251     PISSN: 00320781     EISSN: None     Source Type: Journal    
DOI: 10.1093/pcp/pch098     Document Type: Article

References (23)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1987) Current Protocols in Molecular Biology. Wiley, New York.
3. Cho, H.-T. and Kende, H. (1998) Tissue localization of expansins in deepwater rice. Plant J. 15: 805-812.
4. Escher, D., Bodmer-Glavas, M., Barberis, A. and Schaffner, W. (2000) Conservation of glutamine-rich transactivation function between yeast and humans. Mol. Cell. Biol. 20: 2774-2782.
5. Gerber, H.P., Seipel, K., Georgiev, O., Hofferer, M., Hug, M., Rusconi, S. and Schaffner, W. (1994) Transcriptional activation modulated by homopolymeric glutamine and proline stretches. Science 263: 808-811.
6. Goff, S.A., Ricke, D., Lan, T.-H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H. et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. Japonica). Science 296: 92-100.
7. Kende, H., van der Knaap, E. and Cho, H.-T. (1998) Deepwater rice: a model plant to study stem elongation. Plant Physiol. 118: 1105-1110.
8. Kim, J.H., Choi, D. and Kende, H. (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J. 36: 94-104.
9. Lee, Y., Choi, D. and Kende, H. (2001) Expansins: ever-expanding numbers and functions. Curr. Opin. Plant Biol. 4: 527-532.
10. Lee, Y. and Kende, H. (2001) Expression of β-expansins is correlated with internodal elongation in deepwater rice. Plant Physiol. 127: 645-654.
11. Mitchell, P.J. and Tjian, R. (1989) Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245: 371-378.
12. Raskin, I. and Kende, H. (1984) The role of gibberellin in the growth response of submerged deepwater rice. Plant Physiol. 76: 947-950.
13. Raventós, D., Skriver, K., Schlein, M., Karnahl, K., Rogers, S.W., Rogers, J.C. and Mundy, J. (1998) HRT, a novel zinc finger, transcriptional repressor from barley. J. Biol. Chem. 273: 23313-23320.
14. Rice Full-Length cDNA Consortium (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301: 376-379.
15. Sakata, K., Nagamura, Y., Numa, H., Antonio, B.A., Nagasaki, H., Idonuma, A., Watanabe, W., Shimizu, Y., Horiuchi, I., Matsumoto, T., Sasaki, T. and Higo, K. (2002) RiceGAAS: an automated annotation system and database for rice genome sequence. Nucleic Acids Res. 30: 98-102.
16. Stünzi, J.T. and Kende, H. (1989) Gas composition in the internal air spaces of deepwater rice in relation to growth induced by submergence. Plant Cell Physiol. 30: 49-56.
17. Tamai, H., Iwabuchi, M. and Meshi, T. (2002) Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-box-binding bZIP factors. Plant Cell Physiol. 43: 99-107.
18. Treich, I., Cairns, B.R., de los Santos, T., Brewster, E. and Carlson, M. (1995) SNF11, a new component of the yeast SNF-SWI complex that interacts with a conserved region of SNF2. Mol. Cell. Biol. 15: 4240-4248.
19. van der Knaap, E., Kim, J.H. and Kende, H. (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol. 122: 695-704.
20. Vaquero, A., Espinas, M.L., Azorin, F. and Bernues, J. (2000) Functional mapping of the GAGA factor assigns its transcriptional activity to the C-terminal glutamine-rich domain. J. Biol. Chem. 275: 19461-19468.
21. Verwoerd, T.C., Dekker, B.M.M. and Hoekema, A. (1989) A small-scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Res. 17: 2362.
22. Yanagisawa, S. (2001) The transcriptional activation domain of the plant-specific Dof1 factor functions in plant, animal, and yeast cells. Plant Cell Physiol. 42: 813-822.
23. Yu, J., Hu, S., Wang, J., Wong, G.K.-S., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X. et al. (2002) A draft sequence of the rice genome (Oryza sativa L., ssp. Indica). Science 296: 79-92.