-
1
-
-
33747857598
-
Timecourse microarray analyses reveal global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode)
-
Alkharouf NW, Klink VP, Chouikha IB, Beard HS, MacDonald MH, Meyer S, Knap HT, Khan R, Matthews BF (2006) Timecourse microarray analyses reveal global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode). Planta 224: 838-852
-
(2006)
Planta
, vol.224
, pp. 838-852
-
-
Alkharouf, N.W.1
Klink, V.P.2
Chouikha, I.B.3
Beard, H.S.4
Macdonald, M.H.5
Meyer, S.6
Knap, H.T.7
Khan, R.8
Matthews, B.F.9
-
2
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
3
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
-
Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
4
-
-
0034195294
-
A screen for Arabidopsis thaliana mutants with altered susceptibility to Heterodera schachtii
-
Baum TJ, Wubben MJE II, Hardyy KA, Su H, Rodermel SR (2000) A screen for Arabidopsis thaliana mutants with altered susceptibility to Heterodera schachtii. J Nematol 32: 166-173
-
(2000)
J Nematol
, vol.32
, pp. 166-173
-
-
Baum, T.J.1
Wubben II, M.J.E.2
Hardyy, K.A.3
Su, H.4
Rodermel, S.R.5
-
5
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X (2009) Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 25: 21-44
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
6
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
8
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE 2: e219
-
(2007)
PLoS ONE
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
Carrington, J.C.11
-
9
-
-
0036029805
-
Gene expression in nematode feeding sites
-
Gheysen G, Fenoll C (2002) Gene expression in nematode feeding sites. Annu Rev Phytopathol 40: 191-219
-
(2002)
Annu Rev Phytopathol
, vol.40
, pp. 191-219
-
-
Gheysen, G.1
Fenoll, C.2
-
10
-
-
70849115246
-
Manipulation of auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism
-
Grunewald W, van Noorden G, Van Isterdael G, Beeckman T, Gheysen G, Mathesius U (2009) Manipulation of auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism. Plant Cell 21: 2553-2562
-
(2009)
Plant Cell
, vol.21
, pp. 2553-2562
-
-
Grunewald, W.1
van Noorden, G.2
van Isterdael, G.3
Beeckman, T.4
Gheysen, G.5
Mathesius, U.6
-
11
-
-
72049120376
-
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance
-
Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C (2009) Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell 21: 3119-3132
-
(2009)
Plant Cell
, vol.21
, pp. 3119-3132
-
-
Gutierrez, L.1
Bussell, J.D.2
Pacurar, D.I.3
Schwambach, J.4
Pacurar, M.5
Bellini, C.6
-
12
-
-
45549087643
-
Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIRNBS-LRR class R gene-derived novel miRNA in Brassica
-
He XF, Fang YY, Feng L, Guo HS (2008) Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIRNBS-LRR class R gene-derived novel miRNA in Brassica. FEBS Lett 582: 2445-2452
-
(2008)
FEBS Lett
, vol.582
, pp. 2445-2452
-
-
He, X.F.1
Fang, Y.Y.2
Feng, L.3
Guo, H.S.4
-
13
-
-
57149108258
-
Arabidopsis small RNAs and their targets during cyst nematode parasitism
-
Hewezi T, Howe P, Maier TR, Baum TJ (2008a) Arabidopsis small RNAs and their targets during cyst nematode parasitism. Mol Plant Microbe Interact 21: 1622-1634
-
(2008)
Mol Plant Microbe Interact
, vol.21
, pp. 1622-1634
-
-
Hewezi, T.1
Howe, P.2
Maier, T.R.3
Baum, T.J.4
-
14
-
-
58549085207
-
Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: Cooperative cell wall modification during parasitism
-
Hewezi T, Howe P, Maier TR, Hussey RS, Mitchum MG, Davis EL, Baum TJ (2008b) Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell 20: 3080-3093
-
(2008)
Plant Cell
, vol.20
, pp. 3080-3093
-
-
Hewezi, T.1
Howe, P.2
Maier, T.R.3
Hussey, R.S.4
Mitchum, M.G.5
Davis, E.L.6
Baum, T.J.7
-
15
-
-
22044453506
-
The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana
-
Horiguchi G, Kim GT, Tsukaya H (2005) The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J 43: 68-78
-
(2005)
Plant J
, vol.43
, pp. 68-78
-
-
Horiguchi, G.1
Kim, G.T.2
Tsukaya, H.3
-
16
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
17
-
-
34247384020
-
Developmental transcript profiling of cyst nematode feeding cells in soybean roots
-
Ithal N, Recknor J, Nettleton D, Maier T, Baum TJ, Mitchum MG (2007) Developmental transcript profiling of cyst nematode feeding cells in soybean roots. Mol Plant Microbe Interact 20: 510-525
-
(2007)
Mol Plant Microbe Interact
, vol.20
, pp. 510-525
-
-
Ithal, N.1
Recknor, J.2
Nettleton, D.3
Maier, T.4
Baum, T.J.5
Mitchum, M.G.6
-
18
-
-
0342444416
-
GUS fusions: B-glucuronidase as a sensitive and versatile gene fusion marker in higher plants
-
Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: b-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907
-
(1987)
EMBO J
, vol.6
, pp. 3901-3907
-
-
Jefferson, R.A.1
Kavanagh, T.A.2
Bevan, M.W.3
-
19
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
20
-
-
35748944555
-
The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis
-
Jung JH, Seo YH, Seo PJ, Reyes JL, Yun J, Chua NH, Park CM (2007) The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis. Plant Cell 19: 2736-2748
-
(2007)
Plant Cell
, vol.19
, pp. 2736-2748
-
-
Jung, J.H.1
Seo, Y.H.2
Seo, P.J.3
Reyes, J.L.4
Yun, J.5
Chua, N.H.6
Park, C.M.7
-
22
-
-
33845202133
-
A pathogen-inducible endogenous siRNA in plant immunity
-
Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu JK, Staskawicz BJ, Jin HL (2006) A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci USA 103: 18002-18007
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18002-18007
-
-
Katiyar-Agarwal, S.1
Morgan, R.2
Dahlbeck, D.3
Borsani, O.4
Villegas Jr., A.5
Zhu, J.K.6
Staskawicz, B.J.7
Jin, H.L.8
-
23
-
-
0141872963
-
The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
-
Kim JH, Choi D, Kende H (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36: 94-104
-
(2003)
Plant J
, vol.36
, pp. 94-104
-
-
Kim, J.H.1
Choi, D.2
Kende, H.3
-
24
-
-
4444358886
-
A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis
-
Kim JH, Kende H (2004) A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Proc Natl Acad Sci USA 101: 13374-13379
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 13374-13379
-
-
Kim, J.H.1
Kende, H.2
-
25
-
-
33846448706
-
GROWTH-REGULATING FACTOR4 of Arabidopsis thaliana is required for development of leaves, cotyledons, and shoot apical meristem
-
Kim JH, Lee BH (2006) GROWTH-REGULATING FACTOR4 of Arabidopsis thaliana is required for development of leaves, cotyledons, and shoot apical meristem. J Plant Biol 49: 463-468
-
(2006)
J Plant Biol
, vol.49
, pp. 463-468
-
-
Kim, J.H.1
Lee, B.H.2
-
26
-
-
70849111801
-
A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode)
-
Klink VP, Hosseini P, Matsye P, Alkharouf NW, Matthews BF (2009) A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Mol Biol 71: 525-567
-
(2009)
Plant Mol Biol
, vol.71
, pp. 525-567
-
-
Klink, V.P.1
Hosseini, P.2
Matsye, P.3
Alkharouf, N.W.4
Matthews, B.F.5
-
27
-
-
77950541210
-
Identification of microRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity
-
Li Y, Zhang Q, Zhang J, Wu L, Qi Y, Zhou J-M (2010) Identification of microRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity. Plant Physiol 152: 2222-2231
-
(2010)
Plant Physiol
, vol.152
, pp. 2222-2231
-
-
Li, Y.1
Zhang, Q.2
Zhang, J.3
Wu, L.4
Qi, Y.5
Zhou, J.-M.6
-
28
-
-
67249094928
-
Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis
-
Liu D, Song Y, Chen Z, Yu D (2009) Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis. Physiol Plant 136: 223-236
-
(2009)
Physiol Plant
, vol.136
, pp. 223-236
-
-
Liu, D.1
Song, Y.2
Chen, Z.3
Yu, D.4
-
30
-
-
34548491177
-
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
-
Lu S, Sun Y-H, Amerson H, Chiang VL (2007) MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development. Plant J 51: 1077-1098
-
(2007)
Plant J
, vol.51
, pp. 1077-1098
-
-
Lu, S.1
Sun, Y.-H.2
Amerson, H.3
Chiang, V.L.4
-
31
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22: 1104-1117
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
32
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JDG (2006) A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312: 436-439
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
Voinnet, O.7
Jones, J.D.G.8
-
33
-
-
49649106693
-
Suppression of the microRNA pathway by bacterial effector proteins
-
Navarro L, Jay F, Nomura K, He SY, Voinnet O (2008) Suppression of the microRNA pathway by bacterial effector proteins. Science 321: 964-967
-
(2008)
Science
, vol.321
, pp. 964-967
-
-
Navarro, L.1
Jay, F.2
Nomura, K.3
He, S.Y.4
Voinnet, O.5
-
35
-
-
42449092941
-
Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata
-
Pandey SP, Shahi P, Gase K, Baldwin IT (2008) Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata. Proc Natl Acad Sci USA 105: 4559-4564
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4559-4564
-
-
Pandey, S.P.1
Shahi, P.2
Gase, K.3
Baldwin, I.T.4
-
36
-
-
73649091109
-
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396
-
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF (2010) Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 137: 103-112
-
(2010)
Development
, vol.137
, pp. 103-112
-
-
Rodriguez, R.E.1
Mecchia, M.A.2
Debernardi, J.M.3
Schommer, C.4
Weigel, D.5
Palatnik, J.F.6
-
37
-
-
0028045181
-
Parasitic strategies of root nematodes and associated host cell responses
-
Sijmons PC, Atkinson HJ, Wyss U (1994) Parasitic strategies of root nematodes and associated host cell responses. Annu Rev Phytopathol 32: 235-259
-
(1994)
Annu Rev Phytopathol
, vol.32
, pp. 235-259
-
-
Sijmons, P.C.1
Atkinson, H.J.2
Wyss, U.3
-
38
-
-
0000719012
-
Arabidopsis thaliana as a new model host for plant parasitic nematodes
-
Sijmons PC, Grundler FMW, Von Mende N, Burrows PR, Wyss U (1991) Arabidopsis thaliana as a new model host for plant parasitic nematodes. Plant J 1: 245-254
-
(1991)
Plant J
, vol.1
, pp. 245-254
-
-
Sijmons, P.C.1
Grundler, F.M.W.2
von Mende, N.3
Burrows, P.R.4
Wyss, U.5
-
39
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article 3
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
40
-
-
33644872577
-
Limma: Linear Models for Microarray Data
-
R Gentleman, V Carey, S Dudoit, R Irizarry, W Huber, eds, Springer, New York
-
Smyth GK (2005) limma: Linear Models for Microarray Data. In R Gentleman, V Carey, S Dudoit, R Irizarry, W Huber, eds, Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Springer, New York, pp 397-420
-
(2005)
Bioinformatics and ComputaTional Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
41
-
-
58049173992
-
Structure of cyst nematode feeding sites
-
In RH Berg, CG Taylor, Springer, Berlin
-
Sobczak M, Golinowski W (2009) Structure of cyst nematode feeding sites. In RH Berg, CG Taylor, eds, Cell Biology of Plant Nematode Parasitism. Plant Cell Monographs. Springer, Berlin, pp 153-187
-
(2009)
Cell Biology of Plant Nematode Parasitism. Plant Cell Monographs
, pp. 153-187
-
-
Sobczak, M.1
Golinowski, W.2
-
42
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
43
-
-
61349112654
-
The transcriptome of syncytia induced by the cyst nematode Heterodera schachtii in Arabidopsis roots
-
Szakasits D, Heinen P, Wieczorek K, Hofmann J, Wagner F, Kreil DP, Sykacek P, Grundler FM, Bohlmann H (2009) The transcriptome of syncytia induced by the cyst nematode Heterodera schachtii in Arabidopsis roots. Plant J 57: 771-784
-
(2009)
Plant J
, vol.57
, pp. 771-784
-
-
Szakasits, D.1
Heinen, P.2
Wieczorek, K.3
Hofmann, J.4
Wagner, F.5
Kreil, D.P.6
Sykacek, P.7
Grundler, F.M.8
Bohlmann, H.9
-
45
-
-
33745763557
-
Nematode resistance in plants: The battle underground
-
Williamson VM, Kumar A (2006) Nematode resistance in plants: the battle underground. Trends Genet 22: 396-403
-
(2006)
Trends Genet
, vol.22
, pp. 396-403
-
-
Williamson, V.M.1
Kumar, A.2
-
46
-
-
68749100821
-
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
-
Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 138: 750-759
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Weigel, D.5
Poethig, R.S.6
-
47
-
-
33750373240
-
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3
-
Wu G, Poethig RS (2006) Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development 133: 3539-3547
-
(2006)
Development
, vol.133
, pp. 3539-3547
-
-
Wu, G.1
Poethig, R.S.2
|