OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4

Plant Physiology

Volumn 165, Issue 1, 2014, Pages 160-174

  Liu, Huanhuan ^a   Guo, Siyi ^a   Xu, Yunyuan ^a   Li, Chunhua ^a   Zhang, Zeyong ^a   Zhang, Dajian ^a   Xu, Shujuan ^a   Zhang, Cui ^a   Chong, Kang ^a,b  

^a INSTITUTE OF BOTANY   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; PROTEIN BINDING; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; CHEMISTRY; FLOWER; GENE EXPRESSION REGULATION; GENE SILENCING; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; IN SITU HYBRIDIZATION; INFLORESCENCE; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; ORGANOGENESIS; PHENOTYPE; PLANT GENOME; PROTEIN ANALYSIS; RICE; TRANSGENIC PLANT;

AMINO ACID SEQUENCE; BASE SEQUENCE; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENE KNOCKDOWN TECHNIQUES; GENOME, PLANT; IN SITU HYBRIDIZATION; INFLORESCENCE; MICRORNAS; MOLECULAR SEQUENCE DATA; MUTATION; ORGANOGENESIS; ORYZA SATIVA; PHENOTYPE; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; TRANSCRIPTION, GENETIC;

EID: 84899838067     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.114.235564     Document Type: Article

References (53)

1. Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741
2. Bommert P, Satoh-Nagasawa N, Jackson D, Hirano HY (2005) Genetics and evolution of inflorescence and flower development in grasses. Plant Cell Physiol 46: 69-78
3. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, et al (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33: e179
4. Choi D, Kim JH, Kende H (2004) Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.). Plant Cell Physiol 45: 897-904
5. Cui R, Han J, Zhao S, Su K, Wu F, Du X, Xu Q, Chong K, Theissen G, Meng Z (2010) Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J 61: 767-781
6. Gao X, Liang W, Yin C, Ji S, Wang H, Su X, Guo C, Kong H, Xue H, Zhang D (2010) The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development. Plant Physiol 153: 728-740
7. Guo SY, Xu YY, Liu HH, Mao ZW, Zhang C, Ma Y, Zhang QR, Meng Z, Chong K (2013) The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun 4: 1566
8. Hong LL, Qian Q, Zhu KM, Tang D, Huang ZJ, Gao L, Li M, Gu MH, Cheng ZK (2010) ELE restrains empty glumes from developing into lemmas. J Genet Genomics 37: 101-115
9. Horigome A, Nagasawa N, Ikeda K, Ito M, Itoh JI, Nagato Y (2009) Rice open beak is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene. Plant J 58: 724-736
10. Horiguchi G, Ferjani A, Fujikura U, Tsukaya H (2006) Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana. J Plant Res 119: 37-42
11. Horiguchi G, Nakayama H, Ishikawa N, Kubo M, Demura T, Fukuda H, Tsukaya H (2011) ANGUSTIFOLIA3 plays roles in adaxial/abaxial patterning and growth in leaf morphogenesis. Plant Cell Physiol 52: 112-124
12. Ikeda-Kawakatsu K, Maekawa M, Izawa T, Itoh JI, Nagato Y (2012) ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1. Plant J 69: 168-180
13. Ikeda-Kawakatsu K, Yasuno N, Oikawa T, Iida S, Nagato Y, Maekawa M, Kyozuka J (2009) Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem. Plant Physiol 150: 736-747
14. Ikeda K, Ito M, Nagasawa N, Kyozuka J, Nagato Y (2007a) Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate. Plant J 51: 1030-1040
15. Ikeda K, Nagasawa N, Itoh M, Kyozuka J, Nagato Y (2007b) Analyses of ABERRANT PANICLE ORGANIZATION1 (APO1) gene regulating the spikelet number in rice. Plant Cell Physiol 48: S52
16. Itoh J, Nonomura K, Ikeda K, Yamaki S, Inukai Y, Yamagishi H, Kitano H, Nagato Y (2005) Rice plant development: from zygote to spikelet. Plant Cell Physiol 46: 23-47
17. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: betaglucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907
18. Jeon JS, Jang S, Lee S, Nam J, Kim C, Lee SH, Chung YY, Kim SR, Lee YH, Cho YG, et al (2000) leafy hull sterile1 Is a homeotic mutation in a rice MADS box gene affecting rice flower development. Plant Cell 12: 871-884
19. Jeong DH, An SY, Kang HG, Moon S, Han JJ, Park S, Lee HS, An KS, An GH (2002) T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol 130: 1636-1644
20. Jin Y, Luo Q, Tong HN, Wang AJ, Cheng ZJ, Tang JF, Li DY, Zhao XF, Li XB, Wan JM, et al (2011) An AT-hook gene is required for palea formation and floral organ number control in rice. Dev Biol 359: 277-288
21. Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799
22. Kim JH, Choi DS, Kende H (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36: 94-104
23. Kim JH, Kende H (2004) A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Proc Natl Acad Sci USA 101: 13374-13379
24. Kim JH, Lee BH (2006) GROWTH-REGULATING FACTOR4 of Arabidopsis thaliana is required for development of leaves, cotyledons, and shoot apical meristem. J Plant Biol 49: 463-468
25. Lee BH, Ko JH, Lee S, Lee Y, Pak JH, Kim JH (2009) The Arabidopsis GRFINTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties. Plant Physiol 151: 655-668
26. Lee BH, Wynn AN, Franks RG, Hwang YS, Lim J, Kim JH (2014) The Arabidopsis thaliana GRF-INTERACTING FACTOR gene family plays an essential role in control of male and female reproductive development. Dev Biol 386: 12-24
27. Li H, Liang W, Jia R, Yin C, Zong J, Kong H, Zhang D (2010a) The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice. Cell Res 20: 299-313
28. Li H, Xue D, Gao Z, Yan M, Xu W, Xing Z, Huang D, Qian Q, Xue Y (2009) A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice. Plant J 57: 593-605
29. Li J, Jiang J, Qian Q, Xu Y, Zhang C, Xiao J, Du C, Luo W, Zou G, Chen M, et al (2011) Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation. Plant Cell 23: 628-640
30. Li Y, Xu P, Zhang H, Peng H, Zhang Q, Wang X, Wu X (2007) Characterization and identification of a novel mutant fon(t) on floral organ number and floral organ identity in rice. J Genet Genomics 34: 730-737
31. Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang WX, Sunkar R (2010b) Transcriptome-wide identification of microRNA targets in rice. Plant J 62: 742-759
32. Liang G, He H, Li Y, Wang F, Yu DQ (2014) Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis. Plant Physiol 164: 249-258
33. Liu DM, Song Y, Chen ZX, Yu DQ (2009) Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis. Physiol Plant 136: 223-236
34. Luo AD, Liu L, Tang ZS, Bai XQ, Cao SY, Chu CC (2005) Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date. J Integr Plant Biol 47: 745-752
35. Ma QB, Dai XY, Xu YY, Guo J, Liu YJ, Chen N, Xiao J, Zhang DJ, Xu ZH, et al (2009) Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiol 150: 244-256
36. Ohmori S, Kimizu M, Sugita M, Miyao A, Hirochika H, Uchida E, Nagato Y, Yoshida H (2009) MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice. Plant Cell 21: 3008-3025
37. Prasad K, Parameswaran S, Vijayraghavan U (2005) OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs. Plant J 43: 915-928
38. Pu CX, Ma Y, Wang J, Zhang YC, Jiao XW, Hu YH, Wang LL, Zhu ZG, Sun DY, Sun Y (2012) Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation. Plant J 70: 940-953
39. Raventós D, Skriver K, Schlein M, Karnahl K, Rogers SW, Rogers JC, Mundy J (1998) HRT, a novel zinc finger, transcriptional repressor from barley. J Biol Chem 273: 23313-23320
40. Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF (2010) Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 137: 103-112
41. Sentoku N, Kato H, Kitano H, Imai R (2005) OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy. Mol Genet Genomics 273: 1-9
42. Sun Q, Zhou DX (2008) Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development. Proc Natl Acad Sci USA 105: 13679-13684
43. Sunkar R, Jagadeeswaran G (2008) In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 8: 37
44. Tanaka W, Toriba T, Ohmori Y, Yoshida A, Kawai A, Mayama-Tsuchida T, Ichikawa H, Mitsuda N, Ohme-Takagi M, Hirano HY (2012) The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet. Plant Cell 24: 80-95
45. van der Knaap E, Kim JH, Kende H (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol 122: 695-704
46. Waadt R, Schmidt LK, Lohse M, Hashimoto K, Bock R, Kudla J (2008) Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J 56: 505-516
47. Wang L, Gu X, Xu D, Wang W, Wang H, Zeng M, Chang Z, Huang H, Cui X (2011) miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis. J Exp Bot 62: 761-773
48. Wang L, Xu Y, Zhang C, Ma Q, Joo SH, Kim SK, Xu Z, Chong K (2008) OsLIC, a novel CCCH-type zinc finger protein with transcription activation, mediates rice architecture via brassinosteroids signaling. PLoS ONE 3: e3521
49. Xu YY, Wang XM, Li J, Li JH, Wu JS, Walker JC, Xu ZH, Chong K (2005) Activation of the WUS gene induces ectopic initiation of floral meristems on mature stem surface in Arabidopsis thaliana. PlantMol Biol 57: 773-784
50. Yoo JH, Park CY, Kim JC, Heo WD, Cheong MS, Park HC, Kim MC, Moon BC, Choi MS, Kang YH, et al (2005) Direct interaction of a divergent CaM isoform and the transcription factor, MYB2, enhances salt tolerance in Arabidopsis. J Biol Chem 280: 3697-3706
51. Yoshida A, Ohmori Y, Kitano H, Taguchi-Shiobara F, Hirano HY (2012) Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice. Plant J 70: 327-339
52. Yoshida A, Suzaki T, Tanaka W, Hirano HY (2009) The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Proc Natl Acad Sci USA 106: 20103-20108
53. Zhu J, Jeong JC, Zhu Y, Sokolchik I, Miyazaki S, Zhu JK, Hasegawa PM, Bohnert HJ, Shi H, Yun DJ, et al (2008) Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proc Natl Acad Sci USA 105: 4945-4950