Appearance and elaboration of the ethylene receptor family during land plant evolution

Plant Molecular Biology

Volumn 87, Issue 4-5, 2015, Pages 521-539

  Gallie, Daniel R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Ethylene; Ethylene receptor; Gene duplication; Hormone perception; Signal transduction

Indexed keywords

ARABIDOPSIS PROTEIN; CELL SURFACE RECEPTOR; ETHYLENE RECEPTORS, PLANT; ETR1 PROTEIN, ARABIDOPSIS; VEGETABLE PROTEIN;

BRYOPSIDA; CLASSIFICATION; EVOLUTION; GENETICS; METABOLISM;

ARABIDOPSIS PROTEINS; BIOLOGICAL EVOLUTION; BRYOPSIDA; PLANT PROTEINS; RECEPTORS, CELL SURFACE;

EID: 84925485726     PISSN: 01674412     EISSN: 15735028     Source Type: Journal    
DOI: 10.1007/s11103-015-0296-z     Document Type: Article

References (64)

1. Abeles FB, Morgan PW, Saltveit ME (1992) Ethylene in plant biology, 2nd edn. Academic Press Inc, San Diego
2. Alonso JM, Hirayama T, Roman G, Nourizadeh S, Ecker JR (1999) EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284:2148–2152
3. Amborella Genome Project (2013) The Amborella genome and the evolution of flowering plants. Science 342:1241089
4. Binder BM, Chang C, Schaller GE (2012) Perception of ethylene by plants-ethylene receptors. Annual plant reviews, the plant hormone ethylene 44. Wiley, Hoboken, pp 117–145
5. Bleecker AB (1999) Ethylene signaling: an evolutionary perspective. Trends Plant Sci 4:269–274
6. Bleecker AB, Kende H (2000) Ethylene: a gaseous signal molecule in plants. Ann Rev Cell Dev Biol 16:1–18
7. Bleecker AB, Estelle MA, Somerville C, Kende H (1988) Insensitivity to ethylene conferred by a dominant mutation in Arabidopsis thaliana. Science 241:1086–1089
8. Bleecker AB, Esch JJ, Hall AE, Rodríguez FI, Binder BM (1998) The ethylene-receptor family from Arabidopsis: structure and function. Philos Trans R Soc Lond B Biol Sci 353:1405–1412
9. Chang C, Shockey JA (1999) The ethylene-response pathway: signal perception to gene regulation. Curr Opin Plant Biol 2:352–358
10. Chang C, Stadler R (2001) Ethylene hormone receptor action in Arabidopsis. Bioessays 23:619–627
11. Chang C, Stewart RC (1998) The two-component system. Regulation of diverse signaling pathways in prokaryotes and eukaryotes. Plant Physiol 117:723–731
12. Chang C, Kwok SF, Bleecker AB, Meyerowitz EM (1993) Arabidopsis ethylene-response gene ETR1: similarity of product to two-component regulators. Science 262:539–544
13. Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker JR (1997) Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell 89:1133–1144
14. Chen QG, Bleecker AB (1995) Analysis of ethylene signal-transduction kinetics associated with seedling-growth response and chitinase induction in wild-type and mutant Arabidopsis. Plant Physiol 108:597–607
15. Chen JF, Gallie DR (2010) Analysis of the functional conservation of ethylene receptors between maize and Arabidopsis. Plant Mol Biol 74:405–421
16. Chen YF, Randlett MD, Findell JL, Schaller GE (2002) Localization of the ethylene receptor ETR1 to the endoplasmic reticulum of Arabidopsis. J Biol Chem 277:19861–19866
17. Clark KL, Larsen PB, Wang X, Chang C (1998) Association of the Arabidopsis CTR1 Raf-like kinase with the ETR1 and ERS ethylene receptors. Proc Natl Acad Sci USA 95:5401–5406
18. Drew MC (1997) Oxygen deficiency and root metabolism: injury and acclimation under hypoxia and anoxia. Annu Rev Plant Physiol Mol Biol 48:223–250
19. Drew MC, Jackson MB, Giffard S (1979) Ethylene-promoted adventitious rooting and development of cortical air spaces (aerenchyma) in roots may be adaptive responses to flooding in Zea mays L. Planta 147:83–88
20. Drew MC, He C-J, Morgan PW (2000) Programmed cell death and aerenchyma formation in roots. Trends Plant Sci 5:123–127
21. Gallie DR, Young TE (2004) The ethylene biosynthetic and perception machinery is differentially expressed during endosperm and embryo development in maize. Mol Gen Genomics 271:267–281
22. Gallie DR, Geisler-Lee J, Chen J, Jolley B (2009) Tissue-specific expression of the ethylene biosynthetic machinery regulates root growth in maize. Plant Mol Biol 69:195–211
23. Gamble RL, Coonfield ML, Schaller GE (1998) Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis. Proc Natl Acad Sci USA 95:7825–7829
24. Gao Z, Wen CK, Binder BM, Chen YF, Chang J, Chiang YH, Kerris RJ 3rd, Chang C, Schaller GE (2008) Heteromeric interactions among ethylene receptors mediate signaling in Arabidopsis. J Biol Chem 283:23801–23810
25. Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nuclic Acid Res 31:3784–3788
26. Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS (2012) Phytozome: a comparative platform for green plant genomics. Nuclic Acid Res 40:D1178–D1186
27. Grefen C, Städele K, Růzicka K, Obrdlik P, Harter K, Horák J (2008) Subcellular localization and in vivo interaction of the Arabidopsis thaliana ethylene receptor family members. Mol Plant 1:308–320
28. Guzman P, Ecker JR (1990) Exploiting the triple response of Arabidopsis to identify ethylene-related mutants. Plant Cell 2:513–523
29. Hall AE, Bleecker AB (2003) Analysis of combinatorial loss-of-function mutants in the Arabidopsis ethylene receptors reveals that the ers1 etr1 double mutant has severe developmental defects that are EIN2 dependent. Plant Cell 15:2032–2041
30. Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Shimojima M, Masuda S, Iwai M, Nobusawa T, Narise T, Kondo S, Saito H, Sato R, Murakawa M, Ihara Y, Oshima-Yamada Y, Ohtaka K, Satoh M, Sonobe K, Ishii M, Ohtani R, Kanamori-Sato M, Honoki R, Miyazaki D, Mochizuki H, Umetsu J, Higashi K, Shibata D, Kamiya Y, Sato N, Nakamura Y, Tabata S, Ida S, Kurokawa K, Ohta H (2014) Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat Commun 5:3978
31. Hua J, Meyerowitz EM (1998) Ethylene responses are negatively regulated by a receptor gene family in Arabidopsis thaliana. Cell 94:261–271
32. Hua J, Chang C, Sun Q, Meyerowitz EM (1995) Ethylene insensitivity conferred by Arabidopsis ERS gene. Science 269:1712–1714
33. Hua J, Sakai H, Nourizadeh S, Chen QG, Bleecker AB, Ecker JR, Meyerowitz EM (1998) EIN4 and ERS2 are members of the putative ethylene receptor gene family in Arabidopsis. Plant Cell 10:1321–1332
34. Ju C, Van de Poel B, Cooper ED, Thierer JH, Gibbons TR, Delwiche CF, Chang C (2015) Conservation of ethylene as a plant hormone over 450 million years of evolution. Nat Plants 1:14004
35. Kieber JJ, Rothenberg M, Roman G, Feldmann KA, Ecker JR (1993) CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell 72:427–441
36. Klee HJ (2004) Ethylene signal transduction. Moving beyond Arabidopsis. Plant Physiol 135:660–667
37. Le SQ, Gascuel O (2008) LG: an improved, general amino-acid replacement matrix. Mol Biol Evol 25:1307–1320
38. Lin Z, Zhong S, Grierson D (2009) Recent advances in ethylene research. J Exp Bot 60:3311–3336
39. Lohrmann J, Harter K (2002) Plant two-component signaling systems and the role of response regulators. Plant Physiol 128:363–369
40. Mattoo AK, Suttle JC (1991) The Plant Hormone Ethylene. FL CRC Press, Boca Raton
41. Mount SM, Chang C (2002) Evidence for a plastid origin of plant ethylene receptor genes. Plant Physiol 130:10–14
42. Moussatche P, Klee HJ (2004) Autophosphorylation activity of the Arabidopsis ethylene receptor multigene family. J Biol Chem 279:48734–48741
43. Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S (2013) The Norway spruce genome sequence and conifer genome evolution. Nature 497:579–584
44. O’Malley RC, Rodriguez FI, Esch JJ, Binder BM, O’Donnell P, Klee HJ, Bleecker AB (2005) Ethylene-binding activity, gene expression levels, and receptor system output for ethylene receptor family members from Arabidopsis and tomato. Plant J 41:651–659
45. Qu X, Hall B, Gao Z, Schaller GE (2007) A strong constitutive ethylene-response phenotype conferred on Arabidopsis plants containing null mutations in the ethylene receptors ETR1 and ERS1. BMC Plant Biol 7:3
46. Rodriguez FI, Esch JJ, Hall AE, Binder BM, Schaller GE, Bleecker AB (1999) A copper co-factor for the ethylene receptor ETR1 from Arabidopsis. Science 283:996–998
47. Sakai H, Hua J, Chen QG, Chang C, Medrano LJ, Bleecker AB, Meyerowitz EM (1998) ETR2 is an ETR1-like gene involved in ethylene signaling in Arabidopsis. Proc Natl Acad Sci USA 95:5812–5817
48. Schaller GE (1997) Ethylene and cytokinin signalling in plants: the role of two-component systems. Essays Biochem 32:101–111
49. Schaller GE (2012) Ethylene and the regulation of plant development. BMC Biol 10:9. doi:10.1186/1741-7007-10-9
50. Schaller GE, Ladd AN, Lanahan MB, Spanbauer JM, Bleecker AB (1995) The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimer. J Biol Chem 270:12526–12530
51. Shakeel SN, Wang X, Binder BM, Schaller GE (2013) Mechanisms of signal transduction by ethylene: overlapping and non-overlapping signalling roles in a receptor family. AoB Plants 5:plt010
52. Solano R, Stepanova A, Chao Q, Ecker JR (1998) Genes Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Development 12:3703–3714
53. Stepanova AN, Alonso JM (2005) Arabidopsis ethylene signaling pathway. Sci STKE 276:cm4
54. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
55. Tieman DM, Taylor MG, Ciardi JA, Klee HJ (2000) The tomato ethylene receptors NR and LeETR4 are negative regulators of ethylene response and exhibit functional compensation within a multigene family. Proc Natl Acad Sci USA 97:5663–5668
56. Timme RE, Delwiche CF (2010) Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes. BMC Plant Biol 10:96
57. Wang KL, Li H, Ecker JR (2002) Ethylene biosynthesis and signaling networks. Plant Cell 14:S131–S151
58. Wang W, Hall AE, O’Malley R, Bleecker AB (2003) Canonical histidine kinase activity of the transmitter domain of the ETR1 ethylene receptor from Arabidopsis is not required for signal transmission. Proc Natl Acad Sci USA 100:352–357
59. Wang W, Esch JJ, Shiu SH, Agula H, Binder BM, Chang C, Patterson SE, Bleecker AB (2006) Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis. Plant Cell 18:3429–3442
60. Whalen MC, Feldman LJ (1988) The effect of ethylene on root growth of Zea mays seedlings. Can J Bot 66:719–723
61. Xie F, Liu Q, Wen C-K (2006) Receptor signal output mediated by the ETR1 N-terminus is primarily subfamily I receptor dependent. Plant Physiol 142:492–508
62. Yau CP, Wang L, Yu M, Zee SY, Yip WK (2004) Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions. J Exp Bot 55:547–556
63. Young TE, Gallie DR, DeMason DA (1997) Ethylene-mediated programmed cell death during maize endosperm development of wild-type and shrunken2 genotypes. Plant Physiol 115:737–751
64. Young TE, Meeley RB, Gallie DR (2004) ACC synthase expression regulates leaf performance and drought tolerance in maize. Plant J 40:813–825