MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root

Proceedings of the National Academy of Sciences of the United States of America

Volumn 112, Issue 39, 2015, Pages 12099-12104

  Liberman, Louisa M ^a   Sparks, Erin E ^a   Moreno Risueno, Miguel A ^a,b   Petricka, Jalean J ^a,c   Benfey, Philip N ^a  

^a DUKE UNIVERSITY   (United States)

^b UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

^c CARLETON COLLEGE   (United States)

Author keywords

Casparian strip; Differentiation; Endodermis; MYB36; Proliferation

Indexed keywords

MYB DOMAIN PROTEIN 36; PROTEIN MYB; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; MYB36 PROTEIN, ARABIDOPSIS; PRIMER DNA; SCR PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

ARABIDOPSIS THALIANA; ARTICLE; CELL DIFFERENTIATION; CELL PROLIFERATION; ENDODERMIS; GENE ACTIVATION; NONHUMAN; PLANT ROOT; PRIORITY JOURNAL; PROTEIN EXPRESSION; REGULATORY MECHANISM; ARABIDOPSIS; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MUTAGENESIS; PHYSIOLOGY; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL DIFFERENTIATION; CELL PROLIFERATION; DNA PRIMERS; GENE EXPRESSION REGULATION, PLANT; MUTAGENESIS; PLANT ROOTS; REAL-TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, RNA; TRANSCRIPTION FACTORS;

EID: 84942874559     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1515576112     Document Type: Article

References (37)

1. Caspary R (1865) Bemerkungen über die Schutzscheide und die Bildung des Stammes und der Wurzel. Methods Mol Biol 4: 24.
2. Naseer S, et al. (2012) Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin. Proc Natl Acad Sci USA 109(25): 10101-10106.
3. Nakajima K, Sena G, Nawy T, Benfey PN (2001) Intercellular movement of the putative transcription factor SHR in root patterning. Nature 413(6853): 307-311.
4. Sozzani R, et al. (2010) Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. Nature 466(7302): 128-132.
5. Levesque MP, et al. (2006) Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol 4(5): e143.
6. Welch D, et al. (2007) Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. Genes Dev 21(17): 2196-2204.
7. Cui H, et al. (2007) An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316(5823): 421-425.
8. Long Y, et al. (2015) Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification. Plant Cell 27(4): 1185-1199.
9. Sena G, Jung JW, Benfey PN (2004) A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression. Development 131(12): 2817-2826.
10. Roppolo D, et al. (2011) A novel protein family mediates Casparian strip formation in the endodermis. Nature 473(7347): 380-383.
11. Lee Y, Rubio MC, Alassimone J, Geldner N (2013) A mechanism for localized lignin deposition in the endodermis. Cell 153(2): 402-412.
12. Dubos C, et al. (2010) MYB transcription factors in Arabidopsis. Trends Plant Sci 15(10): 573-581.
13. Iyer-Pascuzzi AS, et al. (2011) Cell identity regulators link development and stress responses in the Arabidopsis root. Dev Cell 21(4): 770-782.
14. Alassimone J, Naseer S, Geldner N (2010) A developmental framework for endodermal differentiation and polarity. Proc Natl Acad Sci USA 107(11): 5214-5219.
15. Brady SM, et al. (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318(5851): 801-806.
16. Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U (2013) Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data. Genome Res 23(10): 1730-1739.
17. Birnbaum K, et al. (2003) A gene expression map of the Arabidopsis root. Science 302(5652): 1956-1960.
18. Tsukagoshi H, Busch W, Benfey PN (2010) Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 143(4): 606-616.
19. Pfister A, et al. (2014) A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects. eLife 3: e03115.
20. Dalman FC, Scherrer LC, Taylor LP, Akil H, Pratt WB (1991) Localization of the 90-kDa heat shock protein-binding site within the hormone-binding domain of the gluco-corticoid receptor by peptide competition. J Biol Chem 266(6): 3482-3490.
21. Livanos P, Apostolakos P, Galatis B (2012) Plant cell division: ROS homeostasis is required. Plant Signal Behav 7(7): 771-778.
22. Schmidt R, Schippers JHM (2015) ROS-mediated redox signaling during cell differentiation in plants. Biochim Biophys Acta 1850(8): 1497-1508.
23. Weinberg RA (1995) The retinoblastoma protein and cell cycle control. Cell 81(3): 323-330.
24. Wagner D, Sablowski RW, Meyerowitz EM (1999) Transcriptional activation of APE-TALA1 by LEAFY. Science 285(5427): 582-584.
25. Schindelin J, et al. (2012) Fiji: An open-source platform for biological-image analysis. Nat Methods 9(7): 676-682.
26. Preibisch S, Saalfeld S, Tomancak P (2009) Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics 25(11): 1463-1465.
27. Weigel D, Glazebrook J (2006) EMS mutagenesis of Arabidopsis seed. CSH Protoc 2006(5): pdb.prot4621.
28. Leshchiner I, et al. (2012) Mutation mapping and identification by whole-genome sequencing. Genome Res 22(8): 1541-1548.
29. Neff MM, Turk E, Kalishman M (2002) Web-based primer design for single nucleotide polymorphism analysis. Trends Genet 18(12): 613-615.
30. Wysocka-Diller JW, Helariutta Y, Fukaki H, Malamy JE, Benfey PN (2000) Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127(3): 595-603.
31. Trapnell C, Pachter L, Salzberg SL (2009) TopHat: Discovering splice junctions with RNA-seq. Bioinformatics 25(9): 1105-1111.
32. Anders S, Pyl PT, Huber W (2015) HTSeq - A Python framework to work with high-throughput sequencing data. Bioinformatics 31(2): 166-169.
33. Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11(10): R106.
34. Trapnell C, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28(5): 516-520.
35. Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z (2009) GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10: 48.
36. Zhou R, Benavente LM, Stepanova AN, Alonso JM (2011) A recombineering-based gene tagging system for Arabidopsis. Plant J 66(4): 712-723.
37. Kamiya T, et al. (2015) The MYB36 transcription factor orchestrates Casparian strip formation. Proc Natl Acad Sci USA 112(33): 10533-10538.