메뉴 건너뛰기




Volumn 7, Issue 1, 2015, Pages

Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies

(66)  Li, Yun R a,b   van Setten, Jessica c   Verma, Shefali S f   Lu, Yontao d   Holmes, Michael V e   Gao, Hui b,e   Lek, Monkol g,h   Nair, Nikhil b,e   Chandrupatla, Hareesh b,e   Chang, Baoli b,e   Karczewski, Konrad J g,h   Wong, Chanel b,e   Mohebnasab, Maede b   Mukhtar, Eyas b,e   Phillips, Randy b,e   Tragante, Vinicius c   Hou, Cuiping b   Steel, Laura b,e   Lee, Takesha b,e   Garifallou, James b   more..


Author keywords

[No Author keywords available]

Indexed keywords

HLA ANTIGEN; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR;

EID: 84942757746     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/s13073-015-0211-x     Document Type: Article
Times cited : (51)

References (54)
  • 2
    • 77957238813 scopus 로고    scopus 로고
    • The Registry of the International Society for Heart and Lung Transplantation: twenty-seventh official adult heart transplant report--2010
    • Stehlik J, Edwards LB, Kucheryavaya AY, Aurora P, Christie JD, Kirk R, et al. The Registry of the International Society for Heart and Lung Transplantation: twenty-seventh official adult heart transplant report--2010. J Heart Lung Transplant. 2010;29:1089-103.
    • (2010) J Heart Lung Transplant , vol.29 , pp. 1089-1103
    • Stehlik, J.1    Edwards, L.B.2    Kucheryavaya, A.Y.3    Aurora, P.4    Christie, J.D.5    Kirk, R.6
  • 3
    • 68949220837 scopus 로고    scopus 로고
    • Acute cellular rejection is a risk factor for bronchiolitis obliterans syndrome independent of post-transplant baseline FEV1
    • Burton CM, Iversen M, Carlsen J, Mortensen J, Andersen CB, Steinbrüchel D, et al. Acute cellular rejection is a risk factor for bronchiolitis obliterans syndrome independent of post-transplant baseline FEV1. J Heart Lung Transplant. 2009;28:888-93.
    • (2009) J Heart Lung Transplant , vol.28 , pp. 888-893
    • Burton, C.M.1    Iversen, M.2    Carlsen, J.3    Mortensen, J.4    Andersen, C.B.5    Steinbrüchel, D.6
  • 4
    • 4644252003 scopus 로고    scopus 로고
    • Deduction of the fraction of immunologic and non-immunologic failure in cadaver donor transplants.
    • Terasaki PI. Deduction of the fraction of immunologic and non-immunologic failure in cadaver donor transplants. Clin Transpl. 2003;449-52.
    • (2003) Clin Transpl , pp. 449-452
    • Terasaki, P.I.1
  • 5
    • 84903733990 scopus 로고    scopus 로고
    • Strategies for the management of adverse events associated with mTOR inhibitors
    • Kaplan B, Qazi Y, Wellen JR. Strategies for the management of adverse events associated with mTOR inhibitors. Transplant Rev (Orlando). 2014;28:126-33.
    • (2014) Transplant Rev (Orlando) , vol.28 , pp. 126-133
    • Kaplan, B.1    Qazi, Y.2    Wellen, J.R.3
  • 6
    • 84886953611 scopus 로고    scopus 로고
    • Diagnosis, management and treatment of glucometabolic disorders emerging after kidney transplantation: a position statement from the Nordic Transplantation Societies
    • Hornum M, Lindahl JP, von Zur-Mühlen B, Jenssen T, Feldt-Rasmussen B. Diagnosis, management and treatment of glucometabolic disorders emerging after kidney transplantation: a position statement from the Nordic Transplantation Societies. Transpl Int. 2013;26:1049-60.
    • (2013) Transpl Int , vol.26 , pp. 1049-1060
    • Hornum, M.1    Lindahl, J.P.2    Zur-Mühlen, B.3    Jenssen, T.4    Feldt-Rasmussen, B.5
  • 7
    • 58149347486 scopus 로고    scopus 로고
    • Genome-wide association studies: potential next steps on a genetic journey
    • McCarthy MI, Hirschhorn JN. Genome-wide association studies: potential next steps on a genetic journey. Hum Mol Genet. 2008;17:R156-65.
    • (2008) Hum Mol Genet , vol.17 , pp. R156-R165
    • McCarthy, M.I.1    Hirschhorn, J.N.2
  • 8
    • 79951523290 scopus 로고    scopus 로고
    • Design of tag SNP whole genome genotyping arrays
    • Peiffer DA, Gunderson KL. Design of tag SNP whole genome genotyping arrays. Methods Mol Biol. 2009;529:51-61.
    • (2009) Methods Mol Biol , vol.529 , pp. 51-61
    • Peiffer, D.A.1    Gunderson, K.L.2
  • 9
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • International HapMap Consortium. The International HapMap Project. Nature. 2003;426:789-96.
    • (2003) Nature , vol.426 , pp. 789-796
  • 10
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, et al. A map of human genome variation from population-scale sequencing. Nature. 2010;467:1061-73.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Abecasis, G.R.1    Altshuler, D.2    Auton, A.3    Brooks, L.D.4    Durbin, R.M.5
  • 11
    • 46049115562 scopus 로고    scopus 로고
    • H-Y as a minor histocompatibility antigen in kidney transplantation: a retrospective cohort study
    • Gratwohl A, Döhler B, Stern M, Opelz G. H-Y as a minor histocompatibility antigen in kidney transplantation: a retrospective cohort study. Lancet. 2008;372:49-53.
    • (2008) Lancet , vol.372 , pp. 49-53
    • Gratwohl, A.1    Döhler, B.2    Stern, M.3    Opelz, G.4
  • 13
    • 0242332172 scopus 로고    scopus 로고
    • Natural killer-cell activity after human renal transplantation in relation to killer immunoglobulin-like receptors and human leukocyte antigen mismatch
    • Vampa ML, Norman PJ, Burnapp L, Vaughan RW, Sacks SH, Wong W. Natural killer-cell activity after human renal transplantation in relation to killer immunoglobulin-like receptors and human leukocyte antigen mismatch. Transplantation. 2003;76:1220-8.
    • (2003) Transplantation , vol.76 , pp. 1220-1228
    • Vampa, M.L.1    Norman, P.J.2    Burnapp, L.3    Vaughan, R.W.4    Sacks, S.H.5    Wong, W.6
  • 15
    • 84885058682 scopus 로고    scopus 로고
    • Moving beyond HLA: a review of nHLA antibodies in organ transplantation
    • Sigdel TK, Sarwal MM. Moving beyond HLA: a review of nHLA antibodies in organ transplantation. Hum Immunol. 2013;74:1486-90.
    • (2013) Hum Immunol , vol.74 , pp. 1486-1490
    • Sigdel, T.K.1    Sarwal, M.M.2
  • 16
  • 18
    • 83655184675 scopus 로고    scopus 로고
    • The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients
    • Birdwell KA, Grady B, Choi L, Xu H, Bian A, Denny JC, et al. The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients. Pharmacogenet Genomics. 2012;22:32-42.
    • (2012) Pharmacogenet Genomics , vol.22 , pp. 32-42
    • Birdwell, K.A.1    Grady, B.2    Choi, L.3    Xu, H.4    Bian, A.5    Denny, J.C.6
  • 19
    • 80755144029 scopus 로고    scopus 로고
    • Validation of single nucleotide polymorphisms associated with acute rejection in kidney transplant recipients using a large multi-center cohort
    • Oetting WS, Schladt DP, Leduc RE, Jacobson PA, Guan W, Matas AJ, et al. Validation of single nucleotide polymorphisms associated with acute rejection in kidney transplant recipients using a large multi-center cohort. Transpl Int. 2011;24:1231-8.
    • (2011) Transpl Int , vol.24 , pp. 1231-1238
    • Oetting, W.S.1    Schladt, D.P.2    Leduc, R.E.3    Jacobson, P.A.4    Guan, W.5    Matas, A.J.6
  • 20
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • Marchini J, Howie B. Genotype imputation for genome-wide association studies. Nat Rev Genet. 2010;11:499-511.
    • (2010) Nat Rev Genet , vol.11 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 21
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • Howie B, Marchini J, Stephens M. Genotype imputation with thousands of genomes. G3 (Bethesda). 2011;1:457-70.
    • (2011) G3 (Bethesda) , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 22
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet. 2007;81:1084-97.
    • (2007) Am J Hum Genet , vol.81 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 23
    • 84905579746 scopus 로고    scopus 로고
    • Whole-genome sequence variation, population structure and demographic history of the Dutch population
    • The Genome of the Netherlands Consortium. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat Genet. 2014;46:818-25.
    • (2014) Nat Genet , vol.46 , pp. 818-825
  • 25
    • 56349155783 scopus 로고    scopus 로고
    • Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies
    • Keating BJ, Tischfield S, Murray SS, Bhangale T, Price TS, Glessner JT, et al. Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies. PLoS One. 2008;3:e3583.
    • (2008) PLoS One , vol.3 , pp. e3583
    • Keating, B.J.1    Tischfield, S.2    Murray, S.S.3    Bhangale, T.4    Price, T.S.5    Glessner, J.T.6
  • 26
    • 79960279940 scopus 로고    scopus 로고
    • Promise and pitfalls of the Immunochip
    • Cortes A, Brown MA. Promise and pitfalls of the Immunochip. Arthritis Res Ther. 2011;13:101.
    • (2011) Arthritis Res Ther , vol.13 , pp. 101
    • Cortes, A.1    Brown, M.A.2
  • 27
    • 84865693681 scopus 로고    scopus 로고
    • The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits
    • Voight BF, Kang HM, Ding J, Palmer CD, Sidore C, Chines PS, et al. The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits. PLoS Genet. 2012;8:e1002793.
    • (2012) PLoS Genet , vol.8 , pp. e1002793
    • Voight, B.F.1    Kang, H.M.2    Ding, J.3    Palmer, C.D.4    Sidore, C.5    Chines, P.S.6
  • 28
    • 79960700796 scopus 로고    scopus 로고
    • Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array
    • Hoffmann TJ, Kvale MN, Hesselson SE, Zhan Y, Aquino C, Cao Y, et al. Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array. Genomics. 2011;98:79-89.
    • (2011) Genomics , vol.98 , pp. 79-89
    • Hoffmann, T.J.1    Kvale, M.N.2    Hesselson, S.E.3    Zhan, Y.4    Aquino, C.5    Cao, Y.6
  • 29
    • 84942756449 scopus 로고    scopus 로고
    • UK Biobank Array Design Group. UK Biobank Axiom Array Datasheet. 2014. Available from: http://www.ukbiobank.ac.uk/wp-content/uploads/2014/04/UK-Biobank-Axiom-Array-Datasheet-2014.pdf.
    • (2014) UK Biobank Axiom Array Datasheet.
  • 30
    • 84942804021 scopus 로고    scopus 로고
    • Affymetrix Inc. Axiom Biobank Genotyping Arrays. 2014. Available from: http://media.affymetrix.com/support/technical/datasheets/axiom_biobank_genotyping_arrays_datasheet.pdf
    • (2014) Axiom Biobank Genotyping Arrays
  • 32
    • 84942755762 scopus 로고    scopus 로고
    • ExAC Browser. Available from: http://exac.broadinstitute.org.
    • ExAC Browser.
  • 33
    • 84942750473 scopus 로고    scopus 로고
    • iGeneTrain. Available from: www.igenetrain.org.
  • 36
    • 33749137515 scopus 로고    scopus 로고
    • A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
    • T G, de Bakker PIW, McVean G, Sabeti PC, Miretti MM, Green T, et al. A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet. 2006;38:1166.
    • (2006) Nat Genet , vol.38 , pp. 1166
    • Bakker, P.I.W.1    McVean, G.2    Sabeti, P.C.3    Miretti, M.M.4    Green, T.5
  • 40
    • 79951512755 scopus 로고    scopus 로고
    • Genetic determinants of mycophenolate-related anemia and leukopenia after transplantation
    • Jacobson PA, Schladt D, Oetting WS, Leduc R, Guan W, Matas AJ, et al. Genetic determinants of mycophenolate-related anemia and leukopenia after transplantation. Transplantation. 2011;91:309-16.
    • (2011) Transplantation , vol.91 , pp. 309-316
    • Jacobson, P.A.1    Schladt, D.2    Oetting, W.S.3    Leduc, R.4    Guan, W.5    Matas, A.J.6
  • 41
    • 79951511037 scopus 로고    scopus 로고
    • Novel polymorphisms associated with tacrolimus trough concentrations: results from a multicenter kidney transplant consortium
    • Jacobson PA, Oetting WS, Brearley AM, Leduc R, Guan W, Schladt D, et al. Novel polymorphisms associated with tacrolimus trough concentrations: results from a multicenter kidney transplant consortium. Transplantation. 2011;91:300-8.
    • (2011) Transplantation , vol.91 , pp. 300-308
    • Jacobson, P.A.1    Oetting, W.S.2    Brearley, A.M.3    Leduc, R.4    Guan, W.5    Schladt, D.6
  • 42
    • 84862776591 scopus 로고    scopus 로고
    • Genetic and clinical determinants of early, acute calcineurin inhibitor-related nephrotoxicity: results from a kidney transplant consortium
    • Jacobson PA, Schladt D, Israni A, Oetting WS, Lin YC, Leduc R, et al. Genetic and clinical determinants of early, acute calcineurin inhibitor-related nephrotoxicity: results from a kidney transplant consortium. Transplantation. 2012;93:624-31.
    • (2012) Transplantation , vol.93 , pp. 624-631
    • Jacobson, P.A.1    Schladt, D.2    Israni, A.3    Oetting, W.S.4    Lin, Y.C.5    Leduc, R.6
  • 43
    • 84878660707 scopus 로고    scopus 로고
    • A genome-wide association study of recipient genotype and medium-term kidney allograft function
    • O'Brien RP, Phelan PJ, Conroy J, O'Kelly P, Green A, Keogan M, et al. A genome-wide association study of recipient genotype and medium-term kidney allograft function. Clin Transplant. 2013;27:379-87.
    • (2013) Clin Transplant , vol.27 , pp. 379-387
    • O'Brien, R.P.1    Phelan, P.J.2    Conroy, J.3    O'Kelly, P.4    Green, A.5    Keogan, M.6
  • 46
  • 47
    • 56349112398 scopus 로고    scopus 로고
    • The impact of immune gene polymorphisms in kidney and liver transplantation
    • Nickerson P. The impact of immune gene polymorphisms in kidney and liver transplantation. Clin Lab Med. 2008;28:455-68.
    • (2008) Clin Lab Med , vol.28 , pp. 455-468
    • Nickerson, P.1
  • 48
    • 84942815087 scopus 로고    scopus 로고
    • Affymetrix. Available from: www.affymetrix.com.
  • 51
    • 78751505015 scopus 로고    scopus 로고
    • Interleukin-28B polymorphisms are associated with histological recurrence and treatment response following liver transplantation in patients with hepatitis C virus infection
    • Charlton MR, Thompson A, Veldt BJ, Watt K, Tillmann H, Poterucha JJ, et al. Interleukin-28B polymorphisms are associated with histological recurrence and treatment response following liver transplantation in patients with hepatitis C virus infection. Hepatology. 2011;53:317-24.
    • (2011) Hepatology , vol.53 , pp. 317-324
    • Charlton, M.R.1    Thompson, A.2    Veldt, B.J.3    Watt, K.4    Tillmann, H.5    Poterucha, J.J.6
  • 53
    • 84923309456 scopus 로고    scopus 로고
    • Kidney transplant recipients carrying the CYP3A4 22 allelic variant have reduced tacrolimus clearance and often reach supratherapeutic tacrolimus concentrations
    • Pallet N, Jannot A-S, El Bahri M, Etienne I, Buchler M, de Ligny BH, et al. Kidney transplant recipients carrying the CYP3A4 22 allelic variant have reduced tacrolimus clearance and often reach supratherapeutic tacrolimus concentrations. Am J Transplant. 2015;15:800-5.
    • (2015) Am J Transplant , vol.15 , pp. 800-805
    • Pallet, N.1    Jannot, A.-S.2    Bahri, M.3    Etienne, I.4    Buchler, M.5    Ligny, B.H.6
  • 54
    • 84876280783 scopus 로고    scopus 로고
    • Effects of CYP3A4 and CYP3A5 polymorphisms on tacrolimus pharmacokinetics in Chinese adult renal transplant recipients: a population pharmacokinetic analysis
    • Zuo X, Ng CM, Barrett JS, Luo A, Zhang B, Deng C, et al. Effects of CYP3A4 and CYP3A5 polymorphisms on tacrolimus pharmacokinetics in Chinese adult renal transplant recipients: a population pharmacokinetic analysis. Pharmacogenet Genomics. 2013;23:251-61.
    • (2013) Pharmacogenet Genomics , vol.23 , pp. 251-261
    • Zuo, X.1    Ng, C.M.2    Barrett, J.S.3    Luo, A.4    Zhang, B.5    Deng, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.