메뉴 건너뛰기




Volumn 7, Issue 4, 2015, Pages 1082-1097

Detecting endogenous retrovirus-driven tissue-specific gene transcription

Author keywords

Endogenous retrovirus; Long terminal repeats; LTR; Placenta; Transcriptome

Indexed keywords

ANTIBODY SPECIFICITY; ENDOGENOUS RETROVIRUS; FEMALE; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; HUMAN; LONG TERMINAL REPEAT; METABOLISM; PLACENTA; PREGNANCY;

EID: 84942278820     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv049     Document Type: Article
Times cited : (40)

References (72)
  • 1
    • 84922237555 scopus 로고    scopus 로고
    • Transposable elementdriven transcript diversification and its relevance to genetic disorders
    • Ayarpadikannan S, Lee HE, Han K, Kim HS. 2015. Transposable elementdriven transcript diversification and its relevance to genetic disorders. Gene 558:187-194.
    • (2015) Gene , vol.558 , pp. 187-194
    • Ayarpadikannan, S.1    Lee, H.E.2    Han, K.3    Kim, H.S.4
  • 2
    • 77951704213 scopus 로고    scopus 로고
    • Serum DNA motifs predict disease and clinical status in multiple sclerosis
    • Beck J, et al. 2010. Serum DNA motifs predict disease and clinical status in multiple sclerosis. J Mol Diagn. 12:312-319.
    • (2010) J Mol Diagn. , vol.12 , pp. 312-319
    • Beck, J.1
  • 3
    • 77956369865 scopus 로고    scopus 로고
    • Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
    • Belyayev A, et al. 2010. Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob DNA. 1:6.
    • (2010) Mob DNA. , vol.1 , pp. 6
    • Belyayev, A.1
  • 4
    • 0037379495 scopus 로고    scopus 로고
    • Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element
    • Bieche I, et al. 2003. Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element. Biol Reprod. 68:1422-1429.
    • (2003) Biol Reprod. , vol.68 , pp. 1422-1429
    • Bieche, I.1
  • 5
    • 0242300065 scopus 로고    scopus 로고
    • Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
    • Blaise S, De Parseval N, Benit L, Heidmann T. 2003. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci U S A. 100:13013-13018.
    • (2003) Proc Natl Acad Sci U S A. , vol.100 , pp. 13013-13018
    • Blaise, S.1    De Parseval, N.2    Benit, L.3    Heidmann, T.4
  • 6
    • 84881611362 scopus 로고    scopus 로고
    • Transposable elements and microevolutionary changes in natural populations
    • Bonchev G, Parisod C. 2013. Transposable elements and microevolutionary changes in natural populations. Mol Ecol Resour. 13:765-775.
    • (2013) Mol Ecol Resour. , vol.13 , pp. 765-775
    • Bonchev, G.1    Parisod, C.2
  • 7
    • 0014407722 scopus 로고
    • Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms
    • Britten RJ, Kohne DE. 1968. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 161:529-540.
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 8
    • 84875231446 scopus 로고    scopus 로고
    • The impact of transposable elements in environmental adaptation
    • Casacuberta E, Gonzalez J. 2013. The impact of transposable elements in environmental adaptation. Mol Ecol. 22:1503-1517.
    • (2013) Mol Ecol. , vol.22 , pp. 1503-1517
    • Casacuberta, E.1    Gonzalez, J.2
  • 9
    • 81855194024 scopus 로고    scopus 로고
    • Inactivation of the von Hippel-Lindau tumor suppressor leads to selective expression of a human endogenous retrovirus in kidney cancer
    • Cherkasova E, et al. 2011. Inactivation of the von Hippel-Lindau tumor suppressor leads to selective expression of a human endogenous retrovirus in kidney cancer. Oncogene 30:4697-4706.
    • (2011) Oncogene , vol.30 , pp. 4697-4706
    • Cherkasova, E.1
  • 10
    • 84884720095 scopus 로고    scopus 로고
    • Retroviruses facilitate the rapid evolution of the mammalian placenta
    • Chuong EB. 2013. Retroviruses facilitate the rapid evolution of the mammalian placenta. Bioessays 35:853-861.
    • (2013) Bioessays , vol.35 , pp. 853-861
    • Chuong, E.B.1
  • 11
    • 84874663519 scopus 로고    scopus 로고
    • Endogenous retroviruses function as species-specific enhancer elements in the placenta
    • Chuong EB, Rumi MA, Soares MJ, Baker JC. 2013. Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet. 45:325-329.
    • (2013) Nat Genet. , vol.45 , pp. 325-329
    • Chuong, E.B.1    Rumi, M.A.2    Soares, M.J.3    Baker, J.C.4
  • 12
    • 70350232064 scopus 로고    scopus 로고
    • Endogenous retroviral LTRs as promoters for human genes: A critical assessment
    • Cohen CJ, Lock WM, Mager DL. 2009. Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 448:105-114.
    • (2009) Gene , vol.448 , pp. 105-114
    • Cohen, C.J.1    Lock, W.M.2    Mager, D.L.3
  • 14
    • 84907898472 scopus 로고    scopus 로고
    • Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs
    • Cornelis G, et al. 2014. Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs. Proc Natl Acad Sci U S A. 111:E4332-E4341.
    • (2014) Proc Natl Acad Sci U S A. , vol.111 , pp. E4332-E4341
    • Cornelis, G.1
  • 15
    • 84855281420 scopus 로고    scopus 로고
    • Repetitive elements may comprise over twothirds of the human genome
    • De Koning AP, et al. 2011. Repetitive elements may comprise over twothirds of the human genome. PLoS Genet. 7:e1002384.
    • (2011) PLoS Genet. , vol.7 , pp. e1002384
    • De Koning, A.P.1
  • 17
    • 14144254156 scopus 로고    scopus 로고
    • Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae
    • Dupressoir A, et al. 2005. Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae. Proc Natl Acad Sci U S A. 102:725-730.
    • (2005) Proc Natl Acad Sci U S A. , vol.102 , pp. 725-730
    • Dupressoir, A.1
  • 18
    • 0012572299 scopus 로고    scopus 로고
    • A variancestabilizing transformation for gene-expression microarray data
    • Durbin BP, Hardin JS, Hawkins DM, Rocke DM. 2002. A variancestabilizing transformation for gene-expression microarray data. Bioinformatics 18(Suppl 1), S105-S110.
    • (2002) Bioinformatics , vol.18 , pp. S105-S110
    • Durbin, B.P.1    Hardin, J.S.2    Hawkins, D.M.3    Rocke, D.M.4
  • 19
    • 84861320913 scopus 로고    scopus 로고
    • Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements
    • Emera D, et al. 2012. Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Mol Biol Evol. 29:239-247.
    • (2012) Mol Biol Evol. , vol.29 , pp. 239-247
    • Emera, D.1
  • 20
    • 67349173665 scopus 로고    scopus 로고
    • The regulated retrotransposon transcriptome of mammalian cells
    • Faulkner GJ, et al. 2009. The regulated retrotransposon transcriptome of mammalian cells. Nat Genet. 41:563-571.
    • (2009) Nat Genet. , vol.41 , pp. 563-571
    • Faulkner, G.J.1
  • 21
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C. 2008. Transposable elements and the evolution of regulatory networks. Nat Rev Genet. 9:397-405.
    • (2008) Nat Rev Genet. , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 22
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C, Pritham EJ. 2007. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet. 41:331-368.
    • (2007) Annu Rev Genet. , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 23
    • 84901651635 scopus 로고    scopus 로고
    • Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
    • Fort A, et al. 2014. Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nat Genet. 46:558-566.
    • (2014) Nat Genet. , vol.46 , pp. 558-566
    • Fort, A.1
  • 24
    • 70349901268 scopus 로고    scopus 로고
    • Comparative methylation of ERVWE1/syncytin-1 and other human endogenous retrovirus LTRs in placenta tissues
    • Gimenez J, et al. 2009. Comparative methylation of ERVWE1/syncytin-1 and other human endogenous retrovirus LTRs in placenta tissues. DNA Res. 16:195-211.
    • (2009) DNA Res. , vol.16 , pp. 195-211
    • Gimenez, J.1
  • 25
    • 77952307741 scopus 로고    scopus 로고
    • Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control
    • Gimenez J, et al. 2010. Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control. Nucleic Acids Res. 38:2229-2246.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2229-2246
    • Gimenez, J.1
  • 26
    • 84891719250 scopus 로고    scopus 로고
    • Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
    • Harding JL, et al. 2014. Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. Genome Res. 24:96-106.
    • (2014) Genome Res. , vol.24 , pp. 96-106
    • Harding, J.L.1
  • 27
    • 71949099774 scopus 로고    scopus 로고
    • Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: A new "syncytin" in a third order of mammals
    • Heidmann O, Vernochet C, Dupressoir A, Heidmann T. 2009. Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new "syncytin" in a third order of mammals. Retrovirology 6:107.
    • (2009) Retrovirology , vol.6 , pp. 107
    • Heidmann, O.1    Vernochet, C.2    Dupressoir, A.3    Heidmann, T.4
  • 28
    • 79952706183 scopus 로고    scopus 로고
    • The struggle for life of the genome's selfish architects
    • Hua-Van A, et al. 2011. The struggle for life of the genome's selfish architects. Biol Direct. 6:19.
    • (2011) Biol Direct. , vol.6 , pp. 19
    • Hua-Van, A.1
  • 29
    • 46549090079 scopus 로고    scopus 로고
    • Placenta-restricted expression of LTR-derived NOS3
    • Huh JW, Ha HS, Kim DS, Kim HS. 2008. Placenta-restricted expression of LTR-derived NOS3. Placenta 29:602-608.
    • (2008) Placenta , vol.29 , pp. 602-608
    • Huh, J.W.1    Ha, H.S.2    Kim, D.S.3    Kim, H.S.4
  • 30
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka J, et al. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
    • (2005) Cytogenet Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 31
    • 84876864345 scopus 로고    scopus 로고
    • Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
    • Kapusta A, et al. 2013. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 9:e1003470.
    • (2013) PLoS Genet. , vol.9 , pp. e1003470
    • Kapusta, A.1
  • 32
    • 84921908289 scopus 로고    scopus 로고
    • Volatile evolution of long noncoding RNA repertoires: Mechanisms and biological implications
    • Kapusta A, Feschotte C. 2014. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends Genet. 30:439-452.
    • (2014) Trends Genet. , vol.30 , pp. 439-452
    • Kapusta, A.1    Feschotte, C.2
  • 33
    • 84896703728 scopus 로고    scopus 로고
    • Endogenous retroviruses and the development of cancer
    • Kassiotis G. 2014. Endogenous retroviruses and the development of cancer. J Immunol. 192:1343-1349.
    • (2014) J Immunol. , vol.192 , pp. 1343-1349
    • Kassiotis, G.1
  • 34
    • 84891121699 scopus 로고    scopus 로고
    • Association of endogenous retroviruses and long terminal repeats with human disorders
    • Katoh I, Kurata S. 2013. Association of endogenous retroviruses and long terminal repeats with human disorders. Front Oncol. 3:234.
    • (2013) Front Oncol. , vol.3 , pp. 234
    • Katoh, I.1    Kurata, S.2
  • 35
    • 84869881863 scopus 로고    scopus 로고
    • Transposable elements reveal a stem cell-specific class of long noncoding RNAs
    • Kelley D, Rinn J. 2012. Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol. 13:R107.
    • (2012) Genome Biol. , vol.13 , pp. R107
    • Kelley, D.1    Rinn, J.2
  • 36
    • 0035105221 scopus 로고    scopus 로고
    • Perspective: Transposable elements, parasitic DNA, and genome evolution
    • Kidwell MG, Lisch DR. 2001. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55:1-24.
    • (2001) Evolution , vol.55 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 37
    • 84862830326 scopus 로고    scopus 로고
    • Transcriptome landscape of the human placenta
    • Kim J, et al. 2012. Transcriptome landscape of the human placenta. BMC Genomics 13:115.
    • (2012) BMC Genomics , vol.13 , pp. 115
    • Kim, J.1
  • 38
    • 84878667882 scopus 로고    scopus 로고
    • Alu-related transcript of TJP2 gene as a marker for colorectal cancer
    • Kim YJ, Jung YD, Kim TO, Kim HS. 2013. Alu-related transcript of TJP2 gene as a marker for colorectal cancer. Gene 524:268-274.
    • (2013) Gene , vol.524 , pp. 268-274
    • Kim, Y.J.1    Jung, Y.D.2    Kim, T.O.3    Kim, H.S.4
  • 39
    • 77952190003 scopus 로고    scopus 로고
    • Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
    • 1p following 579
    • Lamprecht B, et al. 2010. Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma. Nat Med. 16:571-579; 1p following 579.
    • (2010) Nat Med. , vol.16 , pp. 571-579
    • Lamprecht, B.1
  • 40
    • 0036854278 scopus 로고    scopus 로고
    • The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter
    • Landry JR, Rouhi A, Medstrand P, Mager DL. 2002. The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter. Mol Biol Evol. 19:1934-1942.
    • (2002) Mol Biol Evol. , vol.19 , pp. 1934-1942
    • Landry, J.R.1    Rouhi, A.2    Medstrand, P.3    Mager, D.L.4
  • 41
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 42
    • 84868625735 scopus 로고    scopus 로고
    • Radiation-induced human endogenous retrovirus (HERV)-R env gene expression by epigenetic control
    • Lee JR, et al. 2012. Radiation-induced human endogenous retrovirus (HERV)-R env gene expression by epigenetic control. Radiat Res. 178:379-384.
    • (2012) Radiat Res. , vol.178 , pp. 379-384
    • Lee, J.R.1
  • 43
    • 33645786762 scopus 로고    scopus 로고
    • Influence of human endogenous retroviruses on celullar gene expression
    • Sverdlov E, editor, Boca Raton FL: CRC Press
    • Leib-Mosch C, Seifarth W, Schon U. 2005. Influence of human endogenous retroviruses on celullar gene expression. In: Sverdlov E, editor. Retroviruses and primate genome evolution. Boca Raton (FL): CRC Press.
    • (2005) Retroviruses and Primate Genome Evolution
    • Leib-Mosch, C.1    Seifarth, W.2    Schon, U.3
  • 44
    • 0001116877 scopus 로고
    • Binary codes capable of correcting deletions, insertions, and reversals
    • Levenshtein VI. 1966. Binary codes capable of correcting deletions, insertions, and reversals. Soviet Phys Doklady. 10:707-710.
    • (1966) Soviet Phys Doklady , vol.10 , pp. 707-710
    • Levenshtein, V.I.1
  • 45
    • 84906688503 scopus 로고    scopus 로고
    • Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
    • Lock FE, et al. 2014. Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma. Proc Natl Acad Sci U S A. 111:E3534-E3543.
    • (2014) Proc Natl Acad Sci U S A. , vol.111 , pp. E3534-E3543
    • Lock, F.E.1
  • 46
    • 84863458292 scopus 로고    scopus 로고
    • Embryonic stem cell potency fluctuates with endogenous retrovirus activity
    • Macfarlan TS, et al. 2012. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 487:57-63.
    • (2012) Nature , vol.487 , pp. 57-63
    • Macfarlan, T.S.1
  • 47
    • 23844534414 scopus 로고    scopus 로고
    • Impact of transposable elements on the evolution of mammalian gene regulation
    • Medstrand P, et al. 2005. Impact of transposable elements on the evolution of mammalian gene regulation. Cytogenet Genome Res. 110:342-352.
    • (2005) Cytogenet Genome Res. , vol.110 , pp. 342-352
    • Medstrand, P.1
  • 48
    • 0035910527 scopus 로고    scopus 로고
    • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans
    • Medstrand P, Landry JR, Mager DL. 2001. Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans. J Biol Chem. 276:1896-1903.
    • (2001) J Biol Chem. , vol.276 , pp. 1896-1903
    • Medstrand, P.1    Landry, J.R.2    Mager, D.L.3
  • 49
    • 84905673241 scopus 로고    scopus 로고
    • Transposable elements in cancer as a by-product of stress-induced evolvability
    • Mourier T, Nielsen LP, Hansen AJ, Willerslev E. 2014. Transposable elements in cancer as a by-product of stress-induced evolvability. Front Genet. 5:156.
    • (2014) Front Genet. , vol.5 , pp. 156
    • Mourier, T.1    Nielsen, L.P.2    Hansen, A.J.3    Willerslev, E.4
  • 50
    • 0036924747 scopus 로고    scopus 로고
    • Characterization of a novel human endogenous retrovirus, HERV-H/F, expressed in human leukemia cell lines
    • Patzke S, Lindeskog M, Munthe E, Aasheim HC. 2002. Characterization of a novel human endogenous retrovirus, HERV-H/F, expressed in human leukemia cell lines. Virology 303:164-173.
    • (2002) Virology , vol.303 , pp. 164-173
    • Patzke, S.1    Lindeskog, M.2    Munthe, E.3    Aasheim, H.C.4
  • 52
    • 34547904256 scopus 로고    scopus 로고
    • Widely variable endogenous retroviral methylation levels in human placenta
    • Reiss D, Zhang Y, Mager DL. 2007. Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res. 35:4743-4754.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 4743-4754
    • Reiss, D.1    Zhang, Y.2    Mager, D.L.3
  • 53
    • 33846556612 scopus 로고    scopus 로고
    • Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution
    • Romanish MT, et al. 2007. Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution. PLoS Genet. 3:e10.
    • (2007) PLoS Genet. , vol.3 , pp. e10
    • Romanish, M.T.1
  • 54
    • 55549145080 scopus 로고    scopus 로고
    • Endogenous retroviruses and cancer
    • Ruprecht K, et al. 2008. Endogenous retroviruses and cancer. Cell Mol Life Sci. 65:3366-3382.
    • (2008) Cell Mol Life Sci. , vol.65 , pp. 3366-3382
    • Ruprecht, K.1
  • 56
    • 70450170839 scopus 로고    scopus 로고
    • Human endogenous retroviral long terminal repeat sequences ascell type-specific promoters in retroviral vectors
    • Schoen U, et al. 2009. Human endogenous retroviral long terminal repeat sequences ascell type-specific promoters in retroviral vectors. J Virol. 83:12643-12650.
    • (2009) J Virol. , vol.83 , pp. 12643-12650
    • Schoen, U.1
  • 57
    • 0029958444 scopus 로고    scopus 로고
    • Human trophoblast and choriocarcinoma expression of the growth factor pleiotrophin attributable to germ-line insertion of an endogenous retrovirus
    • Schulte AM, et al. 1996. Human trophoblast and choriocarcinoma expression of the growth factor pleiotrophin attributable to germ-line insertion of an endogenous retrovirus. Proc Natl Acad Sci U S A. 93:14759-14764.
    • (1996) Proc Natl Acad Sci U S A. , vol.93 , pp. 14759-14764
    • Schulte, A.M.1
  • 58
    • 84922489051 scopus 로고    scopus 로고
    • The vertebrate RCAN gene family: Novel insights into evolution, structure and regulation
    • Serrano-Candelas E, et al. 2014. The vertebrate RCAN gene family: novel insights into evolution, structure and regulation. PLoS One 9:e85539.
    • (2014) PLoS One , vol.9 , pp. e85539
    • Serrano-Candelas, E.1
  • 59
    • 0029655710 scopus 로고    scopus 로고
    • The promoter activity of long terminal repeats of the HERV-H family of human retrovirus-like elements is critically dependent on Sp1 family proteins interacting with a GC/GT box located immediately 3' to the TATA box
    • Sjottem E, Anderssen S, Johansen T. 1996. The promoter activity of long terminal repeats of the HERV-H family of human retrovirus-like elements is critically dependent on Sp1 family proteins interacting with a GC/GT box located immediately 3' to the TATA box. J Virol. 70:188-198.
    • (1996) J Virol. , vol.70 , pp. 188-198
    • Sjottem, E.1    Anderssen, S.2    Johansen, T.3
  • 60
    • 84911936991 scopus 로고    scopus 로고
    • Widespread contribution of transposable elements to the innovation of gene regulatory networks
    • Sundaram V, et al. 2014. Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Res. 24:1963-1976.
    • (2014) Genome Res. , vol.24 , pp. 1963-1976
    • Sundaram, V.1
  • 61
    • 40549137442 scopus 로고    scopus 로고
    • Regression of human kidney cancer following allogeneic stem cell transplantation is associated with recognition of an HERV-E antigen by T cells
    • Takahashi Y, et al. 2008. Regression of human kidney cancer following allogeneic stem cell transplantation is associated with recognition of an HERV-E antigen by T cells. J Clin Invest. 118:1099-1109.
    • (2008) J Clin Invest. , vol.118 , pp. 1099-1109
    • Takahashi, Y.1
  • 62
    • 0025169670 scopus 로고
    • Transcription of human endogenous retroviral long terminal repeat (LTR) sequence in a lung cancer cell line
    • Tomita N, et al. 1990. Transcription of human endogenous retroviral long terminal repeat (LTR) sequence in a lung cancer cell line. Biochem Biophys Res Commun. 166:1-10.
    • (1990) Biochem Biophys Res Commun. , vol.166 , pp. 1-10
    • Tomita, N.1
  • 63
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, et al. 2010. Transcript assembly and quantification by RNA-reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 28:511-515.
    • (2010) Nat Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 64
    • 84872033704 scopus 로고    scopus 로고
    • Measurement of mRNA abundance using RNA-Seq data: RPKM measure is inconsistent among samples
    • Wagner GP, Kin K, Lynch VJ. 2012. Measurement of mRNA abundance using RNA-Seq data: RPKM measure is inconsistent among samples. Theory Biosci. 131:281-285.
    • (2012) Theory Biosci. , vol.131 , pp. 281-285
    • Wagner, G.P.1    Kin, K.2    Lynch, V.J.3
  • 65
    • 84890310834 scopus 로고    scopus 로고
    • A model based criterion for gene expression calls using RNA-seq data
    • Wagner GP, Kin K, Lynch VJ. 2013. A model based criterion for gene expression calls using RNA-seq data. Theory Biosci. 132:159-164.
    • (2013) Theory Biosci. , vol.132 , pp. 159-164
    • Wagner, G.P.1    Kin, K.2    Lynch, V.J.3
  • 66
    • 84865852567 scopus 로고    scopus 로고
    • Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • Wang J, et al. 2012. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res. 22:1798-1812.
    • (2012) Genome Res. , vol.22 , pp. 1798-1812
    • Wang, J.1
  • 67
    • 33845456646 scopus 로고    scopus 로고
    • Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer
    • Wang-Johanning F, et al. 2007. Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer. Int J Cancer. 120:81-90.
    • (2007) Int J Cancer. , vol.120 , pp. 81-90
    • Wang-Johanning, F.1
  • 68
    • 84872815703 scopus 로고    scopus 로고
    • Latent regulatory potential of human-specific repetitive elements
    • Ward MC, et al. 2013. Latent regulatory potential of human-specific repetitive elements. Mol Cell. 49:262-272.
    • (2013) Mol Cell. , vol.49 , pp. 262-272
    • Ward, M.C.1
  • 69
    • 84879611157 scopus 로고    scopus 로고
    • DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
    • Xie M, et al. 2013. DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape. Nat Genet. 45:836-841.
    • (2013) Nat Genet. , vol.45 , pp. 836-841
    • Xie, M.1
  • 70
    • 84871978460 scopus 로고    scopus 로고
    • A novel function of RNAs arising from the long terminal repeat of human endogenous retrovirus 9 in cell cycle arrest
    • Xu L, et al. 2013. A novel function of RNAs arising from the long terminal repeat of human endogenous retrovirus 9 in cell cycle arrest. J Virol. 87:25-36.
    • (2013) J Virol. , vol.87 , pp. 25-36
    • Xu, L.1
  • 71
    • 84905403917 scopus 로고    scopus 로고
    • An expanding universe of the non-coding genome in cancer biology
    • Xue B, He L. 2014. An expanding universe of the non-coding genome in cancer biology. Carcinogenesis 35:1209-1216.
    • (2014) Carcinogenesis , vol.35 , pp. 1209-1216
    • Xue, B.1    He, L.2
  • 72
    • 84888236297 scopus 로고    scopus 로고
    • DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis
    • Young JM, et al. 2013. DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis. PLoS Genet. 9:e1003947.
    • (2013) PLoS Genet. , vol.9 , pp. e1003947
    • Young, J.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.