-
1
-
-
84922237555
-
Transposable elementdriven transcript diversification and its relevance to genetic disorders
-
Ayarpadikannan S, Lee HE, Han K, Kim HS. 2015. Transposable elementdriven transcript diversification and its relevance to genetic disorders. Gene 558:187-194.
-
(2015)
Gene
, vol.558
, pp. 187-194
-
-
Ayarpadikannan, S.1
Lee, H.E.2
Han, K.3
Kim, H.S.4
-
2
-
-
77951704213
-
Serum DNA motifs predict disease and clinical status in multiple sclerosis
-
Beck J, et al. 2010. Serum DNA motifs predict disease and clinical status in multiple sclerosis. J Mol Diagn. 12:312-319.
-
(2010)
J Mol Diagn.
, vol.12
, pp. 312-319
-
-
Beck, J.1
-
3
-
-
77956369865
-
Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
-
Belyayev A, et al. 2010. Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob DNA. 1:6.
-
(2010)
Mob DNA.
, vol.1
, pp. 6
-
-
Belyayev, A.1
-
4
-
-
0037379495
-
Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element
-
Bieche I, et al. 2003. Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element. Biol Reprod. 68:1422-1429.
-
(2003)
Biol Reprod.
, vol.68
, pp. 1422-1429
-
-
Bieche, I.1
-
5
-
-
0242300065
-
Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
-
Blaise S, De Parseval N, Benit L, Heidmann T. 2003. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci U S A. 100:13013-13018.
-
(2003)
Proc Natl Acad Sci U S A.
, vol.100
, pp. 13013-13018
-
-
Blaise, S.1
De Parseval, N.2
Benit, L.3
Heidmann, T.4
-
6
-
-
84881611362
-
Transposable elements and microevolutionary changes in natural populations
-
Bonchev G, Parisod C. 2013. Transposable elements and microevolutionary changes in natural populations. Mol Ecol Resour. 13:765-775.
-
(2013)
Mol Ecol Resour.
, vol.13
, pp. 765-775
-
-
Bonchev, G.1
Parisod, C.2
-
7
-
-
0014407722
-
Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms
-
Britten RJ, Kohne DE. 1968. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 161:529-540.
-
(1968)
Science
, vol.161
, pp. 529-540
-
-
Britten, R.J.1
Kohne, D.E.2
-
8
-
-
84875231446
-
The impact of transposable elements in environmental adaptation
-
Casacuberta E, Gonzalez J. 2013. The impact of transposable elements in environmental adaptation. Mol Ecol. 22:1503-1517.
-
(2013)
Mol Ecol.
, vol.22
, pp. 1503-1517
-
-
Casacuberta, E.1
Gonzalez, J.2
-
9
-
-
81855194024
-
Inactivation of the von Hippel-Lindau tumor suppressor leads to selective expression of a human endogenous retrovirus in kidney cancer
-
Cherkasova E, et al. 2011. Inactivation of the von Hippel-Lindau tumor suppressor leads to selective expression of a human endogenous retrovirus in kidney cancer. Oncogene 30:4697-4706.
-
(2011)
Oncogene
, vol.30
, pp. 4697-4706
-
-
Cherkasova, E.1
-
10
-
-
84884720095
-
Retroviruses facilitate the rapid evolution of the mammalian placenta
-
Chuong EB. 2013. Retroviruses facilitate the rapid evolution of the mammalian placenta. Bioessays 35:853-861.
-
(2013)
Bioessays
, vol.35
, pp. 853-861
-
-
Chuong, E.B.1
-
11
-
-
84874663519
-
Endogenous retroviruses function as species-specific enhancer elements in the placenta
-
Chuong EB, Rumi MA, Soares MJ, Baker JC. 2013. Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet. 45:325-329.
-
(2013)
Nat Genet.
, vol.45
, pp. 325-329
-
-
Chuong, E.B.1
Rumi, M.A.2
Soares, M.J.3
Baker, J.C.4
-
12
-
-
70350232064
-
Endogenous retroviral LTRs as promoters for human genes: A critical assessment
-
Cohen CJ, Lock WM, Mager DL. 2009. Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 448:105-114.
-
(2009)
Gene
, vol.448
, pp. 105-114
-
-
Cohen, C.J.1
Lock, W.M.2
Mager, D.L.3
-
14
-
-
84907898472
-
Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs
-
Cornelis G, et al. 2014. Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs. Proc Natl Acad Sci U S A. 111:E4332-E4341.
-
(2014)
Proc Natl Acad Sci U S A.
, vol.111
, pp. E4332-E4341
-
-
Cornelis, G.1
-
15
-
-
84855281420
-
Repetitive elements may comprise over twothirds of the human genome
-
De Koning AP, et al. 2011. Repetitive elements may comprise over twothirds of the human genome. PLoS Genet. 7:e1002384.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002384
-
-
De Koning, A.P.1
-
17
-
-
14144254156
-
Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae
-
Dupressoir A, et al. 2005. Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae. Proc Natl Acad Sci U S A. 102:725-730.
-
(2005)
Proc Natl Acad Sci U S A.
, vol.102
, pp. 725-730
-
-
Dupressoir, A.1
-
18
-
-
0012572299
-
A variancestabilizing transformation for gene-expression microarray data
-
Durbin BP, Hardin JS, Hawkins DM, Rocke DM. 2002. A variancestabilizing transformation for gene-expression microarray data. Bioinformatics 18(Suppl 1), S105-S110.
-
(2002)
Bioinformatics
, vol.18
, pp. S105-S110
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
19
-
-
84861320913
-
Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements
-
Emera D, et al. 2012. Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Mol Biol Evol. 29:239-247.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 239-247
-
-
Emera, D.1
-
20
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner GJ, et al. 2009. The regulated retrotransposon transcriptome of mammalian cells. Nat Genet. 41:563-571.
-
(2009)
Nat Genet.
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
-
21
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
Feschotte C. 2008. Transposable elements and the evolution of regulatory networks. Nat Rev Genet. 9:397-405.
-
(2008)
Nat Rev Genet.
, vol.9
, pp. 397-405
-
-
Feschotte, C.1
-
22
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ. 2007. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet. 41:331-368.
-
(2007)
Annu Rev Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
23
-
-
84901651635
-
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
-
Fort A, et al. 2014. Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nat Genet. 46:558-566.
-
(2014)
Nat Genet.
, vol.46
, pp. 558-566
-
-
Fort, A.1
-
24
-
-
70349901268
-
Comparative methylation of ERVWE1/syncytin-1 and other human endogenous retrovirus LTRs in placenta tissues
-
Gimenez J, et al. 2009. Comparative methylation of ERVWE1/syncytin-1 and other human endogenous retrovirus LTRs in placenta tissues. DNA Res. 16:195-211.
-
(2009)
DNA Res.
, vol.16
, pp. 195-211
-
-
Gimenez, J.1
-
25
-
-
77952307741
-
Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control
-
Gimenez J, et al. 2010. Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control. Nucleic Acids Res. 38:2229-2246.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2229-2246
-
-
Gimenez, J.1
-
26
-
-
84891719250
-
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
-
Harding JL, et al. 2014. Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. Genome Res. 24:96-106.
-
(2014)
Genome Res.
, vol.24
, pp. 96-106
-
-
Harding, J.L.1
-
27
-
-
71949099774
-
Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: A new "syncytin" in a third order of mammals
-
Heidmann O, Vernochet C, Dupressoir A, Heidmann T. 2009. Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new "syncytin" in a third order of mammals. Retrovirology 6:107.
-
(2009)
Retrovirology
, vol.6
, pp. 107
-
-
Heidmann, O.1
Vernochet, C.2
Dupressoir, A.3
Heidmann, T.4
-
28
-
-
79952706183
-
The struggle for life of the genome's selfish architects
-
Hua-Van A, et al. 2011. The struggle for life of the genome's selfish architects. Biol Direct. 6:19.
-
(2011)
Biol Direct.
, vol.6
, pp. 19
-
-
Hua-Van, A.1
-
29
-
-
46549090079
-
Placenta-restricted expression of LTR-derived NOS3
-
Huh JW, Ha HS, Kim DS, Kim HS. 2008. Placenta-restricted expression of LTR-derived NOS3. Placenta 29:602-608.
-
(2008)
Placenta
, vol.29
, pp. 602-608
-
-
Huh, J.W.1
Ha, H.S.2
Kim, D.S.3
Kim, H.S.4
-
30
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, et al. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
-
(2005)
Cytogenet Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
-
31
-
-
84876864345
-
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
-
Kapusta A, et al. 2013. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 9:e1003470.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003470
-
-
Kapusta, A.1
-
32
-
-
84921908289
-
Volatile evolution of long noncoding RNA repertoires: Mechanisms and biological implications
-
Kapusta A, Feschotte C. 2014. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends Genet. 30:439-452.
-
(2014)
Trends Genet.
, vol.30
, pp. 439-452
-
-
Kapusta, A.1
Feschotte, C.2
-
33
-
-
84896703728
-
Endogenous retroviruses and the development of cancer
-
Kassiotis G. 2014. Endogenous retroviruses and the development of cancer. J Immunol. 192:1343-1349.
-
(2014)
J Immunol.
, vol.192
, pp. 1343-1349
-
-
Kassiotis, G.1
-
34
-
-
84891121699
-
Association of endogenous retroviruses and long terminal repeats with human disorders
-
Katoh I, Kurata S. 2013. Association of endogenous retroviruses and long terminal repeats with human disorders. Front Oncol. 3:234.
-
(2013)
Front Oncol.
, vol.3
, pp. 234
-
-
Katoh, I.1
Kurata, S.2
-
35
-
-
84869881863
-
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
-
Kelley D, Rinn J. 2012. Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol. 13:R107.
-
(2012)
Genome Biol.
, vol.13
, pp. R107
-
-
Kelley, D.1
Rinn, J.2
-
36
-
-
0035105221
-
Perspective: Transposable elements, parasitic DNA, and genome evolution
-
Kidwell MG, Lisch DR. 2001. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55:1-24.
-
(2001)
Evolution
, vol.55
, pp. 1-24
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
37
-
-
84862830326
-
Transcriptome landscape of the human placenta
-
Kim J, et al. 2012. Transcriptome landscape of the human placenta. BMC Genomics 13:115.
-
(2012)
BMC Genomics
, vol.13
, pp. 115
-
-
Kim, J.1
-
38
-
-
84878667882
-
Alu-related transcript of TJP2 gene as a marker for colorectal cancer
-
Kim YJ, Jung YD, Kim TO, Kim HS. 2013. Alu-related transcript of TJP2 gene as a marker for colorectal cancer. Gene 524:268-274.
-
(2013)
Gene
, vol.524
, pp. 268-274
-
-
Kim, Y.J.1
Jung, Y.D.2
Kim, T.O.3
Kim, H.S.4
-
39
-
-
77952190003
-
Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
-
1p following 579
-
Lamprecht B, et al. 2010. Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma. Nat Med. 16:571-579; 1p following 579.
-
(2010)
Nat Med.
, vol.16
, pp. 571-579
-
-
Lamprecht, B.1
-
40
-
-
0036854278
-
The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter
-
Landry JR, Rouhi A, Medstrand P, Mager DL. 2002. The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter. Mol Biol Evol. 19:1934-1942.
-
(2002)
Mol Biol Evol.
, vol.19
, pp. 1934-1942
-
-
Landry, J.R.1
Rouhi, A.2
Medstrand, P.3
Mager, D.L.4
-
41
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
42
-
-
84868625735
-
Radiation-induced human endogenous retrovirus (HERV)-R env gene expression by epigenetic control
-
Lee JR, et al. 2012. Radiation-induced human endogenous retrovirus (HERV)-R env gene expression by epigenetic control. Radiat Res. 178:379-384.
-
(2012)
Radiat Res.
, vol.178
, pp. 379-384
-
-
Lee, J.R.1
-
43
-
-
33645786762
-
Influence of human endogenous retroviruses on celullar gene expression
-
Sverdlov E, editor, Boca Raton FL: CRC Press
-
Leib-Mosch C, Seifarth W, Schon U. 2005. Influence of human endogenous retroviruses on celullar gene expression. In: Sverdlov E, editor. Retroviruses and primate genome evolution. Boca Raton (FL): CRC Press.
-
(2005)
Retroviruses and Primate Genome Evolution
-
-
Leib-Mosch, C.1
Seifarth, W.2
Schon, U.3
-
44
-
-
0001116877
-
Binary codes capable of correcting deletions, insertions, and reversals
-
Levenshtein VI. 1966. Binary codes capable of correcting deletions, insertions, and reversals. Soviet Phys Doklady. 10:707-710.
-
(1966)
Soviet Phys Doklady
, vol.10
, pp. 707-710
-
-
Levenshtein, V.I.1
-
45
-
-
84906688503
-
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
-
Lock FE, et al. 2014. Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma. Proc Natl Acad Sci U S A. 111:E3534-E3543.
-
(2014)
Proc Natl Acad Sci U S A.
, vol.111
, pp. E3534-E3543
-
-
Lock, F.E.1
-
46
-
-
84863458292
-
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
-
Macfarlan TS, et al. 2012. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 487:57-63.
-
(2012)
Nature
, vol.487
, pp. 57-63
-
-
Macfarlan, T.S.1
-
47
-
-
23844534414
-
Impact of transposable elements on the evolution of mammalian gene regulation
-
Medstrand P, et al. 2005. Impact of transposable elements on the evolution of mammalian gene regulation. Cytogenet Genome Res. 110:342-352.
-
(2005)
Cytogenet Genome Res.
, vol.110
, pp. 342-352
-
-
Medstrand, P.1
-
48
-
-
0035910527
-
Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans
-
Medstrand P, Landry JR, Mager DL. 2001. Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans. J Biol Chem. 276:1896-1903.
-
(2001)
J Biol Chem.
, vol.276
, pp. 1896-1903
-
-
Medstrand, P.1
Landry, J.R.2
Mager, D.L.3
-
49
-
-
84905673241
-
Transposable elements in cancer as a by-product of stress-induced evolvability
-
Mourier T, Nielsen LP, Hansen AJ, Willerslev E. 2014. Transposable elements in cancer as a by-product of stress-induced evolvability. Front Genet. 5:156.
-
(2014)
Front Genet.
, vol.5
, pp. 156
-
-
Mourier, T.1
Nielsen, L.P.2
Hansen, A.J.3
Willerslev, E.4
-
50
-
-
0036924747
-
Characterization of a novel human endogenous retrovirus, HERV-H/F, expressed in human leukemia cell lines
-
Patzke S, Lindeskog M, Munthe E, Aasheim HC. 2002. Characterization of a novel human endogenous retrovirus, HERV-H/F, expressed in human leukemia cell lines. Virology 303:164-173.
-
(2002)
Virology
, vol.303
, pp. 164-173
-
-
Patzke, S.1
Lindeskog, M.2
Munthe, E.3
Aasheim, H.C.4
-
52
-
-
34547904256
-
Widely variable endogenous retroviral methylation levels in human placenta
-
Reiss D, Zhang Y, Mager DL. 2007. Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res. 35:4743-4754.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4743-4754
-
-
Reiss, D.1
Zhang, Y.2
Mager, D.L.3
-
53
-
-
33846556612
-
Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution
-
Romanish MT, et al. 2007. Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution. PLoS Genet. 3:e10.
-
(2007)
PLoS Genet.
, vol.3
, pp. e10
-
-
Romanish, M.T.1
-
54
-
-
55549145080
-
Endogenous retroviruses and cancer
-
Ruprecht K, et al. 2008. Endogenous retroviruses and cancer. Cell Mol Life Sci. 65:3366-3382.
-
(2008)
Cell Mol Life Sci.
, vol.65
, pp. 3366-3382
-
-
Ruprecht, K.1
-
56
-
-
70450170839
-
Human endogenous retroviral long terminal repeat sequences ascell type-specific promoters in retroviral vectors
-
Schoen U, et al. 2009. Human endogenous retroviral long terminal repeat sequences ascell type-specific promoters in retroviral vectors. J Virol. 83:12643-12650.
-
(2009)
J Virol.
, vol.83
, pp. 12643-12650
-
-
Schoen, U.1
-
57
-
-
0029958444
-
Human trophoblast and choriocarcinoma expression of the growth factor pleiotrophin attributable to germ-line insertion of an endogenous retrovirus
-
Schulte AM, et al. 1996. Human trophoblast and choriocarcinoma expression of the growth factor pleiotrophin attributable to germ-line insertion of an endogenous retrovirus. Proc Natl Acad Sci U S A. 93:14759-14764.
-
(1996)
Proc Natl Acad Sci U S A.
, vol.93
, pp. 14759-14764
-
-
Schulte, A.M.1
-
58
-
-
84922489051
-
The vertebrate RCAN gene family: Novel insights into evolution, structure and regulation
-
Serrano-Candelas E, et al. 2014. The vertebrate RCAN gene family: novel insights into evolution, structure and regulation. PLoS One 9:e85539.
-
(2014)
PLoS One
, vol.9
, pp. e85539
-
-
Serrano-Candelas, E.1
-
59
-
-
0029655710
-
The promoter activity of long terminal repeats of the HERV-H family of human retrovirus-like elements is critically dependent on Sp1 family proteins interacting with a GC/GT box located immediately 3' to the TATA box
-
Sjottem E, Anderssen S, Johansen T. 1996. The promoter activity of long terminal repeats of the HERV-H family of human retrovirus-like elements is critically dependent on Sp1 family proteins interacting with a GC/GT box located immediately 3' to the TATA box. J Virol. 70:188-198.
-
(1996)
J Virol.
, vol.70
, pp. 188-198
-
-
Sjottem, E.1
Anderssen, S.2
Johansen, T.3
-
60
-
-
84911936991
-
Widespread contribution of transposable elements to the innovation of gene regulatory networks
-
Sundaram V, et al. 2014. Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Res. 24:1963-1976.
-
(2014)
Genome Res.
, vol.24
, pp. 1963-1976
-
-
Sundaram, V.1
-
61
-
-
40549137442
-
Regression of human kidney cancer following allogeneic stem cell transplantation is associated with recognition of an HERV-E antigen by T cells
-
Takahashi Y, et al. 2008. Regression of human kidney cancer following allogeneic stem cell transplantation is associated with recognition of an HERV-E antigen by T cells. J Clin Invest. 118:1099-1109.
-
(2008)
J Clin Invest.
, vol.118
, pp. 1099-1109
-
-
Takahashi, Y.1
-
62
-
-
0025169670
-
Transcription of human endogenous retroviral long terminal repeat (LTR) sequence in a lung cancer cell line
-
Tomita N, et al. 1990. Transcription of human endogenous retroviral long terminal repeat (LTR) sequence in a lung cancer cell line. Biochem Biophys Res Commun. 166:1-10.
-
(1990)
Biochem Biophys Res Commun.
, vol.166
, pp. 1-10
-
-
Tomita, N.1
-
63
-
-
77952123055
-
Transcript assembly and quantification by RNA-reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, et al. 2010. Transcript assembly and quantification by RNA-reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 28:511-515.
-
(2010)
Nat Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
64
-
-
84872033704
-
Measurement of mRNA abundance using RNA-Seq data: RPKM measure is inconsistent among samples
-
Wagner GP, Kin K, Lynch VJ. 2012. Measurement of mRNA abundance using RNA-Seq data: RPKM measure is inconsistent among samples. Theory Biosci. 131:281-285.
-
(2012)
Theory Biosci.
, vol.131
, pp. 281-285
-
-
Wagner, G.P.1
Kin, K.2
Lynch, V.J.3
-
65
-
-
84890310834
-
A model based criterion for gene expression calls using RNA-seq data
-
Wagner GP, Kin K, Lynch VJ. 2013. A model based criterion for gene expression calls using RNA-seq data. Theory Biosci. 132:159-164.
-
(2013)
Theory Biosci.
, vol.132
, pp. 159-164
-
-
Wagner, G.P.1
Kin, K.2
Lynch, V.J.3
-
66
-
-
84865852567
-
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
-
Wang J, et al. 2012. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res. 22:1798-1812.
-
(2012)
Genome Res.
, vol.22
, pp. 1798-1812
-
-
Wang, J.1
-
67
-
-
33845456646
-
Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer
-
Wang-Johanning F, et al. 2007. Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer. Int J Cancer. 120:81-90.
-
(2007)
Int J Cancer.
, vol.120
, pp. 81-90
-
-
Wang-Johanning, F.1
-
68
-
-
84872815703
-
Latent regulatory potential of human-specific repetitive elements
-
Ward MC, et al. 2013. Latent regulatory potential of human-specific repetitive elements. Mol Cell. 49:262-272.
-
(2013)
Mol Cell.
, vol.49
, pp. 262-272
-
-
Ward, M.C.1
-
69
-
-
84879611157
-
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
-
Xie M, et al. 2013. DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape. Nat Genet. 45:836-841.
-
(2013)
Nat Genet.
, vol.45
, pp. 836-841
-
-
Xie, M.1
-
70
-
-
84871978460
-
A novel function of RNAs arising from the long terminal repeat of human endogenous retrovirus 9 in cell cycle arrest
-
Xu L, et al. 2013. A novel function of RNAs arising from the long terminal repeat of human endogenous retrovirus 9 in cell cycle arrest. J Virol. 87:25-36.
-
(2013)
J Virol.
, vol.87
, pp. 25-36
-
-
Xu, L.1
-
71
-
-
84905403917
-
An expanding universe of the non-coding genome in cancer biology
-
Xue B, He L. 2014. An expanding universe of the non-coding genome in cancer biology. Carcinogenesis 35:1209-1216.
-
(2014)
Carcinogenesis
, vol.35
, pp. 1209-1216
-
-
Xue, B.1
He, L.2
-
72
-
-
84888236297
-
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis
-
Young JM, et al. 2013. DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis. PLoS Genet. 9:e1003947.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003947
-
-
Young, J.M.1
|