메뉴 건너뛰기




Volumn 10, Issue 7, 2015, Pages

Is the cell nucleus a necessary component in precise temporal patterning?

Author keywords

[No Author keywords available]

Indexed keywords

KARYOPHERIN; MESSENGER RNA; NUCLEAR PROTEIN;

EID: 84942155111     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0134239     Document Type: Article
Times cited : (4)

References (43)
  • 1
    • 80054752870 scopus 로고    scopus 로고
    • Noise in biological systems: Pros, cons, and mechanisms of control
    • Pilpel Y. Noise in biological systems: pros, cons, and mechanisms of control. Methods Mol. Biol. 2011; 759: 409-25.
    • (2011) Methods Mol. Biol , vol.759 , pp. 409-425
    • Pilpel, Y.1
  • 2
    • 77956520011 scopus 로고    scopus 로고
    • Functional roles for noise in genetic circuits
    • Eldar A, Elowitz MB. Functional roles for noise in genetic circuits. Nature Reviews. 2010; 467: 09326
    • (2010) Nature Reviews , vol.467 , pp. 09326
    • Eldar, A.1    Elowitz, M.B.2
  • 3
    • 4644343922 scopus 로고    scopus 로고
    • Bacterial persistence as a phenotypic switch
    • PMID: 15308767
    • Balaban NQ, Merrin J, Chait R, Kowalik L, Leibler S. Bacterial persistence as a phenotypic switch. Science. 2004; 305: 1622-1625. doi: 10.1126/science.1099390 PMID: 15308767
    • (2004) Science , vol.305 , pp. 1622-1625
    • Balaban, N.Q.1    Merrin, J.2    Chait, R.3    Kowalik, L.4    Leibler, S.5
  • 4
    • 35548960975 scopus 로고    scopus 로고
    • Dissecting timing variability in yeast meiosis
    • PMID: 17981121
    • Nachman I, Regev A, Ramanathan S. Dissecting timing variability in yeast meiosis. Cell. 2007; 131(3): 544-56. doi: 10.1016/j.cell.2007.09.044 PMID: 17981121
    • (2007) Cell , vol.131 , Issue.3 , pp. 544-556
    • Nachman, I.1    Regev, A.2    Ramanathan, S.3
  • 5
    • 50149090966 scopus 로고    scopus 로고
    • Variability and robustness in t cell activation from regulated heterogeneity in protein levels
    • Fienerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G. Variability and robustness in T cell activation from regulated heterogeneity in protein levels. Science. 2008; 321: 1081-1084. doi: 10. 1126/science.1158013
    • (2008) Science , vol.321 , pp. 1081-1084
    • Fienerman, O.1    Veiga, J.2    Dorfman, J.R.3    Germain, R.N.4    Altan-Bonnet, G.5
  • 6
    • 0041677612 scopus 로고    scopus 로고
    • Autoinhibition with transcriptional delay: A simple mechanism for the zebrafish somitogenesis oscillator
    • Lewis J. Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. Curr. Biol. 2003; 13 1398-408. doi: 10.1016/S0960-9822(03)00534-7 PMID: 12932323
    • (2003) Curr. Biol , vol.13 , pp. 1398-1408
    • Lewis, J.1
  • 7
    • 16644373292 scopus 로고    scopus 로고
    • Noise minimization in eukaryotic gene expression
    • Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB. Noise minimization in eukaryotic gene expression. PLOS Biol. 2004; 2(6): 0834. doi: 10.1371/journal.pbio.0020137
    • (2004) PLOS Biol , vol.2 , Issue.6 , pp. 0834
    • Fraser, H.B.1    Hirsh, A.E.2    Giaever, G.3    Kumm, J.4    Eisen, M.B.5
  • 8
    • 84865973117 scopus 로고    scopus 로고
    • Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals
    • Joshi A, Beck Y, Michoel T. Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals. FEBC Journal. 2012; 279: 3501-3512. doi: 10. 1111/j.1742-4658.2012.08571.x
    • (2012) FEBC Journal , vol.279 , pp. 3501-3512
    • Joshi, A.1    Beck, Y.2    Michoel, T.3
  • 9
    • 84882796113 scopus 로고    scopus 로고
    • Precise developmental gene expression arises fromglobally stochastic transcriptional activity
    • PMID: 23953111
    • Little SC, Tikhonov M, Gregor T. Precise Developmental Gene Expression Arises fromGlobally Stochastic Transcriptional Activity. Cell. 2013; 154: 789-800. doi: 10.1016/j.cell.2013.07.025 PMID: 23953111
    • (2013) Cell , vol.154 , pp. 789-800
    • Little, S.C.1    Tikhonov, M.2    Gregor, T.3
  • 10
    • 33846108256 scopus 로고    scopus 로고
    • Noise in transcription negative feedback loops: Simulation and experimental analysis
    • PMID: 16883354
    • Dublanche Y, Michalodimitrakis K, Kümmere N, Foglierini N, Serrano L. Noise in transcription negative feedback loops: simulation and experimental analysis. Mol. Syst. Biol. 2006; 2: 41 doi: 10.1038/msb4100081 PMID: 16883354
    • (2006) Mol. Syst. Biol , vol.2 , pp. 41
    • Dublanche, Y.1    Michalodimitrakis, K.2    Kümmere, N.3    Foglierini, N.4    Serrano, L.5
  • 11
    • 77956528790 scopus 로고    scopus 로고
    • Fundamental limits on the suppression of molecular fluctuations
    • Lestas I, Vinnicombe G, Paulsson J. Fundamental limits on the suppression of molecular fluctuations. Nature. 2010; 467: 09333 doi: 10.1038/nature09333
    • (2010) Nature , vol.467 , pp. 09333
    • Lestas, I.1    Vinnicombe, G.2    Paulsson, J.3
  • 12
    • 8544264562 scopus 로고    scopus 로고
    • Efficient attenuation of stochasticity in gene expression through post-transcriptional control
    • Swain PS. Efficient attenuation of stochasticity in gene expression through post-transcriptional control. J. Mol. Biol. 2010; 344: 965-976. doi: 10.1016/j.jmb.2004.09.073
    • (2010) J. Mol. Biol , vol.344 , pp. 965-976
    • Swain, P.S.1
  • 13
    • 84876357659 scopus 로고    scopus 로고
    • Decomposing noise in biochemical signaling systems highlights the role of protein degradation
    • PMID 23601325
    • Komorowski M, Miekisz J, Stumpf MPH. Decomposing Noise in Biochemical Signaling Systems Highlights the Role of Protein Degradation. Biophys. J. 2013; 104: 1783-1793. doi: 10.1016/j.bpj.2013.02. 027 PMID: 23601325
    • (2013) Biophys. J , vol.104 , pp. 1783-1793
    • Komorowski, M.1    Miekisz, J.2    Stumpf, M.P.H.3
  • 14
    • 84898645323 scopus 로고    scopus 로고
    • Stochastic noise reduction upon complexification: Positively correlated birth-death type systems
    • PMID: 24632443
    • Rooman M, Albert J, Duerinckx M. Stochastic noise reduction upon complexification: Positively correlated birth-death type systems. J. Theor. Biol. 2014; 354: 113-123. doi: 10.1016/j.jtbi.2014.03.007 PMID: 24632443
    • (2014) J. Theor. Biol , vol.354 , pp. 113-123
    • Rooman, M.1    Albert, J.2    Duerinckx, M.3
  • 15
    • 0037217334 scopus 로고    scopus 로고
    • The role of dimerization in noise reduction of simple genetic networks
    • Bundchuh R, Hayot R, Jayaprakash F. The role of dimerization in noise reduction of simple genetic networks. J. Theor. Biol. 2003; 220:161-9.
    • (2003) J. Theor. Biol , vol.220 , pp. 161-169
    • Bundchuh, R.1    Hayot, R.2    Jayaprakash, F.3
  • 16
    • 56649114559 scopus 로고    scopus 로고
    • Genetic noise control via protein oligomerization
    • PMID: 18980697
    • Ghim CM, Almaas E, Jayaprakash F. Genetic noise control via protein oligomerization. BMC Syst. Biol. 2008; 2: 94. doi: 10.1186/1752-0509-2-94 PMID: 18980697
    • (2008) BMC Syst. Biol , vol.2 , pp. 94
    • Ghim, C.M.1    Almaas, E.2    Jayaprakash, F.3
  • 17
    • 29244476917 scopus 로고    scopus 로고
    • Filtering transcriptional noise during development: Concepts and mechanisms
    • PMID: 16369570
    • Arias AM, Hayward P. Filtering transcriptional noise during development: concepts and mechanisms. Nature Reviews. 2006; 7: 34-44. doi: 10.1038/nrg1750 PMID: 16369570
    • (2006) Nature Reviews , vol.7 , pp. 34-44
    • Arias, A.M.1    Hayward, P.2
  • 18
    • 0037075022 scopus 로고    scopus 로고
    • Establishment of developmental precision and proportions in the early drosophila embryo
    • PMID: 11845210
    • Houchmandzadeh B, Wieschaus E, Leibler S. Establishment of developmental precision and proportions in the early Drosophila embryo. Nature. 2002 415: 798-802. doi: 10.1038/415798a PMID: 11845210
    • (2002) Nature , vol.415 , pp. 798-802
    • Houchmandzadeh, B.1    Wieschaus, E.2    Leibler, S.3
  • 19
    • 78650360161 scopus 로고    scopus 로고
    • Boundary formation and maintenance in tissue development
    • Dahman C, Oates AC, Brand M. Boundary formation and maintenance in tissue development Nature Reviews. 2011; 12: 43-55. doi: 10.1038/nrg2902
    • (2011) Nature Reviews , vol.12 , pp. 43-55
    • Dahman, C.1    Oates, A.C.2    Brand, M.3
  • 20
    • 79952222104 scopus 로고    scopus 로고
    • A spatio-temporal model of notch signaling in the zebrafish segmentation clock: Conditions for synchronized oscillatory dynamics
    • PMID: 21386903
    • Terry J, Sturrock M, Dale JK, Maroto M, Chaplain MAJ. A spatio-temporal model of Notch signaling in the zebrafish segmentation clock: conditions for synchronized oscillatory dynamics PLoS ONE. 2011; 6(2):e16980 doi: 10.1371/journal.pone.0016980 PMID: 21386903
    • (2011) PLoS ONE , vol.6 , Issue.2 , pp. e16980
    • Terry, J.1    Sturrock, M.2    Dale, J.K.3    Maroto, M.4    Chaplain, M.A.J.5
  • 21
    • 84907228566 scopus 로고    scopus 로고
    • Synchronization of degrade-And-fire oscillations via a common
    • Mather W, Hasty J, Tsimring LS. Synchronization of Degrade-And-Fire Oscillations via a Common Activator PRL 2014; 113: 128102
    • (2014) Activator PRL , vol.113 , pp. 128102
    • Mather, W.1    Hasty, J.2    Tsimring, L.S.3
  • 22
    • 84861756648 scopus 로고    scopus 로고
    • Influence of nuclear membrane, active transport and cell shape on the hes1 and p53-mdm2 pathways: Insights from spatio-temporal modelling
    • Sturrock M, Terry JA, Xirodimas DP, Thompson AM, Chaplain MAJ. Influence of nuclear membrane, active transport and cell shape on the Hes1 and p53-Mdm2 pathways: Insights from spatio-temporal modelling Bulletin of Math. Biol. 2012; 74: 1531-1579
    • (2012) Bulletin of Math Biol , vol.74 , pp. 1531-1579
    • Sturrock, M.1    Terry, J.A.2    Xirodimas, D.P.3    Thompson, A.M.4    Chaplain, M.A.J.5
  • 23
    • 84879188035 scopus 로고    scopus 로고
    • Spatial stochastic modeling of the hes1 gene regulatory network intrinsic noise can explain heterogeneity in embryonic stem cell differentiation
    • Sturrock M, Hellander A, Matzavinos A, Chaplain MAJ. Spatial stochastic modeling of the Hes1 gene regulatory network: intrinsic noise can explain heterogeneity in embryonic stem cell differentiation Journal of the Royal Society Interface. 2013; 10:20120988 doi: 10.1098/rsif.2012.0988
    • (2013) Journal of the Royal Society Interface , vol.10 , pp. 20120988
    • Sturrock, M.1    Hellander, A.2    Matzavinos, A.3    Chaplain, M.A.J.4
  • 24
    • 84942180520 scopus 로고    scopus 로고
    • Mean field analysis of a spatial stochastic model of a gene regulatory network
    • PMID: 25323318
    • Sturrock M, Murray PJ, Matzavinos A, Chaplain MAJ. Mean field analysis of a spatial stochastic model of a gene regulatory network J Math. Biol. PMID: 25323318
    • J Math. Biol
    • Sturrock, M.1    Murray, P.J.2    Matzavinos, A.3    Chaplain, M.A.J.4
  • 25
    • 0242364231 scopus 로고    scopus 로고
    • The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
    • PMID: 14607112
    • Mangan S, Zaslaver A, Alon U. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J. Mol. Biol. 2003; 334: 197-204 doi: 10.1016/j.jmb.2003.09.049 PMID: 14607112
    • (2003) J. Mol. Biol , vol.334 , pp. 197-204
    • Mangan, S.1    Zaslaver, A.2    Alon, U.3
  • 26
    • 34648816826 scopus 로고    scopus 로고
    • Exporting RNA from the nucleus to the cytoplasm
    • PMID: 17786152
    • Köhler A, Hurt E. Exporting RNA from the nucleus to the cytoplasm. Nature Reviews. 2007; 8: 761-773. doi: 10.1038/nrm2255 PMID: 17786152
    • (2007) Nature Reviews , vol.8 , pp. 761-773
    • Köhler, A.1    Hurt, E.2
  • 27
    • 28044451048 scopus 로고    scopus 로고
    • Mechanism of mRNA transport in the nucleus
    • PMID: 16284251
    • Vargas DY, Ray A, Marras SAE, Kramer FR, Tyagi S. Mechanism of mRNA transport in the nucleus. PNAS. 2005; 102: 47: 17008-17013. doi: 10.1073/pnas.0505580102 PMID: 16284251
    • (2005) PNAS , vol.102 , Issue.47 , pp. 17008-17013
    • Vargas, D.Y.1    Ray, A.2    Marras, S.A.E.3    Kramer, F.R.4    Tyagi, S.5
  • 28
    • 0035203632 scopus 로고    scopus 로고
    • Transport into and out of the nucleus
    • Macara IG. Transport into and out of the nucleus. Microbiol. Mol. Biol. Rev. 2005; 65(4): 570-594. doi: 10.1128/MMBR.65.4.570-594.2001
    • (2005) Microbiol. Mol. Biol. Rev , vol.65 , Issue.4 , pp. 570-594
    • Macara, I.G.1
  • 29
    • 33751222250 scopus 로고    scopus 로고
    • Simple kinetic relationship and nonspecific competition govern nuclear import rates in vivo
    • PMID: 17116750
    • Timney BL, Tetenbaum-Novatt J, Agate DS, Williams R, Zhang W, Chait BT, et al. Simple kinetic relationship and nonspecific competition govern nuclear import rates in vivo. J. Cell. Biol. 2006; 175: 579-593. doi: 10.1083/jcb.200608141 PMID: 17116750
    • (2006) J. Cell. Biol , vol.175 , pp. 579-593
    • Timney, B.L.1    Tetenbaum-Novatt, J.2    Agate, D.S.3    Williams, R.4    Zhang, W.5    Chait, B.T.6
  • 30
    • 16844374515 scopus 로고    scopus 로고
    • A system analysis of importin- Mediated nuclear protein import
    • PMID: 15795315
    • Riddick G, Macara IG. A system analysis of importin- mediated nuclear protein import. J. Cell. Biol. 2005; 168: 1027-1038. doi: 10.1083/jcb.200409024 PMID: 15795315
    • (2005) J. Cell. Biol , vol.168 , pp. 1027-1038
    • Riddick, G.1    Macara, I.G.2
  • 31
    • 67649452381 scopus 로고    scopus 로고
    • The role of the nuclear transport system in cell differentiation
    • PMID: 19465141
    • Yasuhara N, Oka M, Yoneda Y. The role of the nuclear transport system in cell differentiation. Semin Cell Dev Biol. 2009; 20(5): 590-9. doi: 10.1016/j.semcdb.2009.05.003 PMID: 19465141
    • (2009) Semin Cell Dev Biol , vol.20 , Issue.5 , pp. 590-599
    • Yasuhara, N.1    Oka, M.2    Yoneda, Y.3
  • 32
    • 84878013022 scopus 로고    scopus 로고
    • Expression and subcellular distribution of imp13 are regulated in brain development
    • PMID: 23605716
    • You P, Peng Z, Wang Y, Tao T. Expression and subcellular distribution of imp13 are regulated in brain development. In Vitro Cell Dev Biol Anim., 2013; 49(5): 346-353. doi: 10.1007/s11626-013-9599-z PMID: 23605716
    • (2013) Vitro Cell Dev Biol Anim , vol.49 , Issue.5 , pp. 346-353
    • You, P.1    Peng, Z.2    Wang, Y.3    Tao, T.4
  • 33
    • 55149101727 scopus 로고    scopus 로고
    • Importins and exportins in cellular differentiation
    • PMID: 18657223
    • Okada N, Ishigami Y, Suzuki T, Kaneko A, Yasui K, Fukutomi R, et al. Importins and exportins in cellular differentiation. J. Cell. Mol. Med. 2008; 12, No 5B: 1863-1871. doi: 10.1111/j.1582-4934.2008.00437.x PMID: 18657223
    • (2008) J. Cell. Mol. Med , vol.12 , Issue.5 B , pp. 1863-1871
    • Okada, N.1    Ishigami, Y.2    Suzuki, T.3    Kaneko, A.4    Yasui, K.5    Fukutomi, R.6
  • 34
    • 0042424655 scopus 로고    scopus 로고
    • Transcriptional regulatory cascades in development: Initial rates, not steady states, determine network kinetics
    • PMID: 12883007
    • Bolouri H, Davidson EH. Transcriptional regulatory cascades in development: Initial rates, not steady states, determine network kinetics. PNAS. 2003; 100(16): 9371-9376. doi: 10.1073/pnas.1533293100 PMID: 12883007
    • (2003) PNAS , vol.100 , Issue.16 , pp. 9371-9376
    • Bolouri, H.1    Davidson, E.H.2
  • 35
    • 58149120776 scopus 로고    scopus 로고
    • Modeling the dynamics of transcriptional gene regulatory networks for animal development
    • de-Loen SB-T, Davidson EH. Modeling the dynamics of transcriptional gene regulatory networks for animal development. Dev. Biol. 2009; 325: 317-328. doi: 10.1016/j.ydbio.2008.10.043
    • (2009) Dev. Biol , vol.325 , pp. 317-328
    • De-Loen, S.B.-T.1    Davidson, E.H.2
  • 36
    • 0036784630 scopus 로고    scopus 로고
    • In vivo kinetics of mRNA splicing and transport in mammalian cells
    • PMID: 12215528
    • Audibert A, Weil D, Dautry F. In vivo kinetics of mRNA splicing and transport in mammalian cells, Mol. Cell. Biol. 2002; 22(19): 6706-6718. doi: 10.1128/MCB.22.19.6706-6718.2002 PMID: 12215528
    • (2002) Mol. Cell. Biol , vol.22 , Issue.19 , pp. 6706-6718
    • Audibert, A.1    Weil, D.2    Dautry, F.3
  • 37
    • 84891713350 scopus 로고    scopus 로고
    • Targeting nuclear import shuttles, importins/karyopherins alpha by peptide mimicking the nf ?b1/p50 nuclear localization sequence
    • PMID: 24042087
    • Zienkiewicz J, Armitage A, Hawiger J. Targeting nuclear import shuttles, importins/karyopherins alpha by peptide mimicking the NF ?B1/p50 nuclear localization sequence. J. Am. Heart. Assoc. 2013 2 e000386. doi: 10.1161/JAHA.113.000386 PMID: 24042087
    • (2013) J. Am. Heart. Assoc , vol.2 , pp. e000386
    • Zienkiewicz, J.1    Armitage, A.2    Hawiger, J.3
  • 38
    • 0035823482 scopus 로고    scopus 로고
    • Biophysical characterization of interactions involving importin-? during nuclear import
    • PMID: 11448961
    • Catimel B, Teh T, Fontes MR, Jennings JG, Jans DA, Howlett GJ, et al. Biophysical characterization of interactions involving importin-? during nuclear import. J. Biol. Chem. 2001; 276: 34189-34198. doi: 10.1074/jbc.M103531200 PMID: 11448961
    • (2001) J. Biol. Chem , vol.276 , pp. 34189-34198
    • Catimel, B.1    Teh, T.2    Fontes, M.R.3    Jennings, J.G.4    Jans, D.A.5    Howlett, G.J.6
  • 39
    • 84892689634 scopus 로고    scopus 로고
    • Delays induce novel stochastic effects in negative feedback gene circuits
    • Zavala E, Marquez-Lago TT. Delays Induce Novel Stochastic Effects in Negative Feedback Gene Circuits Biophys. J. 2014; 106(2):467-478.
    • (2014) Biophys. J , vol.106 , Issue.2 , pp. 467-478
    • Zavala, E.1    Marquez-Lago, T.T.2
  • 40
    • 26844581913 scopus 로고    scopus 로고
    • Delay-induced stochastic oscillations in gene regulation
    • PMID: 16199522
    • Bratsun D, Volfson D, Tsimring LS, Hasty J. Delay-induced stochastic oscillations in gene regulation PNAS. 2005; 102(41): 14593-14598. doi: 10.1073/pnas.0503858102 PMID: 16199522
    • (2005) PNAS , vol.102 , Issue.41 , pp. 14593-14598
    • Bratsun, D.1    Volfson, D.2    Tsimring, L.S.3    Hasty, J.4
  • 41
    • 75449108347 scopus 로고    scopus 로고
    • The simplicity of completion time distributions for common complex biochemical processes
    • Bel G, Munsky B, Nemenman I. The simplicity of completion time distributions for common complex biochemical processes. Phys Biol. 2010; 7, 016003. doi: 10.1088/1478-3975/7/1/016003
    • (2010) Phys Biol , vol.7 , pp. 016003
    • Bel, G.1    Munsky, B.2    Nemenman, I.3
  • 42
    • 8644276304 scopus 로고    scopus 로고
    • In vivo analysis of importin alpha proteins reveals cellular proliferation inhibition and substrate specificity
    • PMID: 15542834
    • Quensel C, Friedrich B, Sommer T, Hartmann E, Kohler M. In vivo analysis of importin alpha proteins reveals cellular proliferation inhibition and substrate specificity. Mol Cell Biol. 2004; 24(23): 10246-55. doi: 10.1128/MCB.24.23.10246-10255.2004 PMID: 15542834
    • (2004) Mol Cell Biol , vol.24 , Issue.23 , pp. 10246-10255
    • Quensel, C.1    Friedrich, B.2    Sommer, T.3    Hartmann, E.4    Kohler, M.5
  • 43
    • 19544389317 scopus 로고    scopus 로고
    • Energy constraints on the evolution of gene expression
    • Wagner A. Energy Constraints on the Evolution of Gene Expression. Mol. Biol. and Evol. 2005; 22(6): 1365-1374. doi: 10.1093/molbev/msi126
    • (2005) Mol. Biol. and Evol , vol.22 , Issue.6 , pp. 1365-1374
    • Wagner, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.