-
1
-
-
33947197663
-
The epidemiology, pathogenesis and treatment of Pseudomonas aeruginosa infections
-
17335295
-
Driscoll JA, Brody SL, Kollef MH. The epidemiology, pathogenesis and treatment of Pseudomonas aeruginosa infections. Drugs. 2007; 67(3):351-68. PMID: 17335295.
-
(2007)
Drugs.
, vol.67
, Issue.3
, pp. 351-368
-
-
Driscoll, J.A.1
Brody, S.L.2
Kollef, M.H.3
-
2
-
-
84986273987
-
Antibiotic-resistant gram-negative bacterial infections in patients with cancer
-
25352627 PubMed Central PMCID: PMC4303050
-
Perez F, Adachi J, Bonomo RA. Antibiotic-resistant gram-negative bacterial infections in patients with cancer. Clin Infect Dis. 2014; 59 Suppl 5:S335-9. doi: 10.1093/cid/ciu612 PMID: 25352627; PubMed Central PMCID: PMC4303050.
-
(2014)
Clin Infect Dis.
, vol.59
, pp. S335-S339
-
-
Perez, F.1
Adachi, J.2
Bonomo, R.A.3
-
3
-
-
79953305717
-
Class i ribonucleotide reductases: Metallocofactor assembly and repair in vitro and in vivo
-
21456967
-
Cotruvo JA, Stubbe J. Class I ribonucleotide reductases: metallocofactor assembly and repair in vitro and in vivo. Annu Rev Biochem. 2011; 80:733-67. doi: 10.1146/annurev-biochem-061408-095817 PMID: 21456967.
-
(2011)
Annu Rev Biochem.
, vol.80
, pp. 733-767
-
-
Cotruvo, J.A.1
Stubbe, J.2
-
4
-
-
78649793085
-
Ribonucleotide reduction - horizontal transfer of a required function spans all three domains
-
21143941 PubMed Central PMCID: PMC3019208
-
Lundin D, Gribaldo S, Torrents E, Sjöberg BM, Poole AM. Ribonucleotide reduction - horizontal transfer of a required function spans all three domains. BMC evolutionary biology. 2010; 10:383. doi: 10. 1186/1471-2148-10-383 PMID: 21143941; PubMed Central PMCID: PMC3019208.
-
(2010)
BMC Evolutionary Biology.
, vol.10
, pp. 383
-
-
Lundin, D.1
Gribaldo, S.2
Torrents, E.3
Sjöberg, B.M.4
Poole, A.M.5
-
5
-
-
0036219377
-
The crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer
-
11875520 Epub 2002/03/05[pii]
-
Sintchak MD, Arjara G, Kellogg BA, Stubbe J, Drennan CL. The crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer. Nat Struct Biol. 2002; 9(4):293-300. Epub 2002/03/05. doi: 10.1038/nsb774 nsb774 [pii]. PMID: 11875520.
-
(2002)
Nat Struct Biol.
, vol.9
, Issue.4
, pp. 293-300
-
-
Sintchak, M.D.1
Arjara, G.2
Kellogg, B.A.3
Stubbe, J.4
Drennan, C.L.5
-
7
-
-
83755185577
-
DNA building blocks: Keeping control of manufacture
-
22050358 Epub 2011/11/05 PubMed Central PMCID: PMC3267527
-
Hofer A, Crona M, Logan DT, Sjöberg BM. DNA building blocks: keeping control of manufacture. Crit Rev Biochem Mol Biol. 2012; 47(1):50-63. Epub 2011/11/05. doi: 10.3109/10409238.2011.630372 PMID: 22050358; PubMed Central PMCID: PMC3267527.
-
(2012)
Crit Rev Biochem Mol Biol.
, vol.47
, Issue.1
, pp. 50-63
-
-
Hofer, A.1
Crona, M.2
Logan, D.T.3
Sjöberg, B.M.4
-
8
-
-
84907207471
-
Deoxyribonucleotides as genetic and metabolic regulators
-
WOS:000340845900002
-
Mathews CK. Deoxyribonucleotides as genetic and metabolic regulators. Faseb J. 2014; 28(9):3832-40. doi: 10.1096/Fj.14-251249 PMID: WOS:000340845900002.
-
(2014)
Faseb J.
, vol.28
, Issue.9
, pp. 3832-3840
-
-
Mathews, C.K.1
-
9
-
-
84924325740
-
The origin and evolution of ribonucleotide reduction
-
25734234
-
Lundin D, Berggren G, Logan DT, Sjöberg BM. The origin and evolution of ribonucleotide reduction. Life. 2015; 5(1):604-36. doi: 10.3390/life5010604 PMID: 25734234.
-
(2015)
Life.
, vol.5
, Issue.1
, pp. 604-636
-
-
Lundin, D.1
Berggren, G.2
Logan, D.T.3
Sjöberg, B.M.4
-
10
-
-
20444484498
-
Two proteins mediate class II ribonucleotide reductase activity in Pseudomonas aeruginosa: Expression and transcriptional analysis of the aerobic enzymes
-
15722359
-
Torrents E, Poplawski A, Sjöberg B-M. Two proteins mediate class II ribonucleotide reductase activity in Pseudomonas aeruginosa: expression and transcriptional analysis of the aerobic enzymes. The Journal of biological chemistry. 2005; 280(17):16571-8. PMID: 15722359.
-
(2005)
The Journal of Biological Chemistry.
, vol.280
, Issue.17
, pp. 16571-16578
-
-
Torrents, E.1
Poplawski, A.2
Sjöberg, B.-M.3
-
11
-
-
84862560633
-
Discovery of antimicrobial ribonucleotide reductase inhibitors by screening in microwell format
-
PMID: 22665797 Epub 2012/06/06. doi: 1113051109 [pii] PubMed Central PMCID: PMC3382500
-
Tholander F, Sjöberg BM. Discovery of antimicrobial ribonucleotide reductase inhibitors by screening in microwell format. Proc Natl Acad Sci U S A. 2012; 109(25):9798-803. Epub 2012/06/06. doi: 1113051109 [pii] doi: 10.1073/pnas.1113051109 PMID: 22665797; PubMed Central PMCID: PMC3382500.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, Issue.25
, pp. 9798-9803
-
-
Tholander, F.1
Sjöberg, B.M.2
-
12
-
-
79959453401
-
Shift in ribonucleotide reductase gene expression in Pseudomonas aeruginosa during infection
-
21502590 PubMed Central PMCID: PMC3191977
-
Sjöberg BM, Torrents E. Shift in ribonucleotide reductase gene expression in Pseudomonas aeruginosa during infection. Infect Immun. 2011; 79(7):2663-9. doi: 10.1128/IAI.01212-10 PMID: 21502590; PubMed Central PMCID: PMC3191977.
-
(2011)
Infect Immun.
, vol.79
, Issue.7
, pp. 2663-2669
-
-
Sjöberg, B.M.1
Torrents, E.2
-
13
-
-
84861114062
-
Vitamin B12-mediated restoration of defective anaerobic growth leads to reduced biofilm formation in Pseudomonas aeruginosa
-
22371376 PubMed Central PMCID: PMC3347431
-
Lee KM, Go J, Yoon MY, Park Y, Kim SC, Yong DE, et al. Vitamin B12-mediated restoration of defective anaerobic growth leads to reduced biofilm formation in Pseudomonas aeruginosa. Infect Immun. 2012; 80(5):1639-49. doi: 10.1128/IAI.06161-11 PMID: 22371376; PubMed Central PMCID: PMC3347431.
-
(2012)
Infect Immun.
, vol.80
, Issue.5
, pp. 1639-1649
-
-
Lee, K.M.1
Go, J.2
Yoon, M.Y.3
Park, Y.4
Kim, S.C.5
Yong, D.E.6
-
14
-
-
16644371341
-
Optimum solubility (OS) screening: An efficient method to optimize buffer conditions for homogeneity and crystallization of proteins
-
15333951 Epub 2004/08/31[pii]
-
Jancarik J, Pufan R, Hong C, Kim SH, Kim R. Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins. Acta Crystallogr D Biol Crystallogr. 2004; 60(Pt 9):1670-3. Epub 2004/08/31. doi: 10.1107/S0907444904010972 S0907444904010972 [pii]. PMID: 15333951.
-
(2004)
Acta Crystallogr D Biol Crystallogr.
, vol.60
, pp. 1670-1673
-
-
Jancarik, J.1
Pufan, R.2
Hong, C.3
Kim, S.H.4
Kim, R.5
-
15
-
-
0014600637
-
The significance of intermediary plateau regions in enzyme saturation curves
-
4311037 Epub 1969/11/01.
-
Teipel J, Koshland DE Jr. The significance of intermediary plateau regions in enzyme saturation curves. Biochemistry. 1969; 8(11):4656-63. Epub 1969/11/01. PMID: 4311037.
-
(1969)
Biochemistry.
, vol.8
, Issue.11
, pp. 4656-4663
-
-
Teipel, J.1
Koshland, D.E.2
-
16
-
-
0030167866
-
Macromolecule analysis based on electrophoretic mobility in air: Globular proteins
-
21619100
-
Kaufman SL, Skogen JW, Dorman FD, Zarrin F, Lewis KC. Macromolecule analysis based on electrophoretic mobility in air: globular proteins. Analytical chemistry. 1996; 68(11):1895-904. doi: 10.1021/ac951128f PMID: 21619100.
-
(1996)
Analytical Chemistry.
, vol.68
, Issue.11
, pp. 1895-1904
-
-
Kaufman, S.L.1
Skogen, J.W.2
Dorman, F.D.3
Zarrin, F.4
Lewis, K.C.5
-
17
-
-
77955853529
-
Multiple roles of ATP:cob(I)alamin adenosyltransferases in the conversion of B12 to coenzyme B12
-
20677021 Epub 2010/08/03. PubMed Central PMCID: PMC3034633
-
Mera PE, Escalante-Semerena JC. Multiple roles of ATP:cob(I)alamin adenosyltransferases in the conversion of B12 to coenzyme B12. Appl Microbiol Biotechnol. 2010; 88(1):41-8. Epub 2010/08/03. doi: 10.1007/s00253-010-2773-2 PMID: 20677021; PubMed Central PMCID: PMC3034633.
-
(2010)
Appl Microbiol Biotechnol.
, vol.88
, Issue.1
, pp. 41-48
-
-
Mera, P.E.1
Escalante-Semerena, J.C.2
-
18
-
-
0142071742
-
Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes
-
12869542
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes. The Journal of biological chemistry. 2003; 278(42):41148-59. doi: 10.1074/jbc.M305837200 PMID: 12869542.
-
(2003)
The Journal of Biological Chemistry.
, vol.278
, Issue.42
, pp. 41148-41159
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
19
-
-
0024349130
-
Evidence for two different classes of redox-active cysteines in ribonucleotide reductase of Escherichia coli
-
2663852
-
Åberg A, Hahne S, Karlsson M, Larsson Å, Ormö M, Åhgren A, et al. Evidence for two different classes of redox-active cysteines in ribonucleotide reductase of Escherichia coli. The Journal of biological chemistry. 1989; 264(21):12249-52. PMID: 2663852.
-
(1989)
The Journal of Biological Chemistry.
, vol.264
, Issue.21
, pp. 12249-12252
-
-
Åberg, A.1
Hahne, S.2
Karlsson, M.3
Larsson, Å.4
Ormö, M.5
Åhgren, A.6
-
20
-
-
0026801085
-
A model for the role of multiple cysteine residues involved in ribonucleotide reduction: Amazing and still confusing
-
1382592
-
Mao SS, Holler TP, Yu GX, Bollinger JM Jr., Booker S, Johnston MI, et al. A model for the role of multiple cysteine residues involved in ribonucleotide reduction: amazing and still confusing. Biochemistry. 1992; 31(40):9733-43. PMID: 1382592.
-
(1992)
Biochemistry.
, vol.31
, Issue.40
, pp. 9733-9743
-
-
Mao, S.S.1
Holler, T.P.2
Yu, G.X.3
Bollinger, J.M.4
Booker, S.5
Johnston, M.I.6
-
21
-
-
0028172124
-
Coenzyme B12-dependent ribonucleotide reductase: Evidence for the participation of five cysteine residues in ribonucleotide reduction
-
7918494
-
Booker S, Licht S, Broderick J, Stubbe J. Coenzyme B12-dependent ribonucleotide reductase: evidence for the participation of five cysteine residues in ribonucleotide reduction. Biochemistry. 1994; 33 (42):12676-85. PMID: 7918494.
-
(1994)
Biochemistry.
, vol.33
, Issue.42
, pp. 12676-12685
-
-
Booker, S.1
Licht, S.2
Broderick, J.3
Stubbe, J.4
-
22
-
-
0027132013
-
Comparison of a structural and a functional epitope
-
7504735
-
Cunningham BC, Wells JA. Comparison of a structural and a functional epitope. J Mol Biol. 1993; 234 (3):554-63. doi: 10.1006/jmbi.1993.1611 PMID: 7504735.
-
(1993)
J Mol Biol.
, vol.234
, Issue.3
, pp. 554-563
-
-
Cunningham, B.C.1
Wells, J.A.2
-
23
-
-
77955010874
-
Subunit and small-molecule interaction of ribonucleotide reductases via surface plasmon resonance biosensor analyses
-
20534631 PubMed Central PMCID: PMC2898501
-
Crona M, Furrer E, Torrents E, Edgell DR, Sjöberg BM. Subunit and small-molecule interaction of ribonucleotide reductases via surface plasmon resonance biosensor analyses. Protein engineering, design & selection: PEDS. 2010; 23(8):633-41. doi: 10.1093/protein/gzq035 PMID: 20534631; PubMed Central PMCID: PMC2898501.
-
(2010)
Protein Engineering, Design & Selection: PEDS.
, vol.23
, Issue.8
, pp. 633-641
-
-
Crona, M.1
Furrer, E.2
Torrents, E.3
Edgell, D.R.4
Sjöberg, B.M.5
-
24
-
-
58149091633
-
Oligomerization status directs overall activity regulation of the Escherichia coli class Ia ribonucleotide reductase
-
18835811 M806738200 [pii] Epub 2008/10/07
-
Rofougaran R, Crona M, Vodnala M, Sjöberg BM, Hofer A. Oligomerization status directs overall activity regulation of the Escherichia coli class Ia ribonucleotide reductase. The Journal of biological chemistry. 2008; 283(51):35310-8. Epub 2008/10/07. doi: M806738200 [pii] doi: 10.1074/jbc.M806738200 PMID: 18835811.
-
(2008)
The Journal of Biological Chemistry.
, vol.283
, Issue.51
, pp. 35310-35318
-
-
Rofougaran, R.1
Crona, M.2
Vodnala, M.3
Sjöberg, B.M.4
Hofer, A.5
-
25
-
-
77958085972
-
Structural basis for adenosylcobalamin activation in AdoCbldependent ribonucleotide reductases
-
20672854 Epub 2010/08/03
-
Larsson KM, Logan DT, Nordlund P. Structural basis for adenosylcobalamin activation in AdoCbldependent ribonucleotide reductases. ACS Chem Biol. 2010; 5(10):933-42. Epub 2010/08/03. doi: 10. 1021/cb1000845 PMID: 20672854.
-
(2010)
ACS Chem Biol.
, vol.5
, Issue.10
, pp. 933-942
-
-
Larsson, K.M.1
Logan, D.T.2
Nordlund, P.3
-
26
-
-
0041622335
-
Class II ribonucleotide reductases catalyze carbon-cobalt bond reformation on every turnover
-
WOS:000082393000001
-
Licht SS, Lawrence CC, Stubbe J. Class II ribonucleotide reductases catalyze carbon-cobalt bond reformation on every turnover. J Am Chem Soc. 1999; 121(33):7463-8. doi: 10.1021/Ja9913840 PMID: WOS:000082393000001.
-
(1999)
J Am Chem Soc.
, vol.121
, Issue.33
, pp. 7463-7468
-
-
Licht, S.S.1
Lawrence, C.C.2
Stubbe, J.3
-
27
-
-
0014135011
-
Studies with hydroxyurea. VII. Hydroxyurea and the synthesis of functional proteins
-
4963772 Epub 1967/10/01 PubMed Central PMCID: PMC276771
-
Rosenkranz HS, Winshell EB, Mednis A, Carr HS, Ellner CJ. Studies with hydroxyurea. VII. Hydroxyurea and the synthesis of functional proteins. Journal of bacteriology. 1967; 94(4):1025-33. Epub 1967/10/01. PMID: 4963772; PubMed Central PMCID: PMC276771.
-
(1967)
Journal of Bacteriology.
, vol.94
, Issue.4
, pp. 1025-1033
-
-
Rosenkranz, H.S.1
Winshell, E.B.2
Mednis, A.3
Carr, H.S.4
Ellner, C.J.5
-
28
-
-
0015454027
-
Mechanism of inhibition of deoxyribonucleic acid synthesis in Escherichia coli by hydroxyurea
-
4565541 Epub 1972/12/01 PubMed Central PMCID: PMC251567
-
Sinha NK, Snustad DP. Mechanism of inhibition of deoxyribonucleic acid synthesis in Escherichia coli by hydroxyurea. Journal of bacteriology. 1972; 112(3):1321-4. Epub 1972/12/01. PMID: 4565541; PubMed Central PMCID: PMC251567.
-
(1972)
Journal of Bacteriology.
, vol.112
, Issue.3
, pp. 1321-1324
-
-
Sinha, N.K.1
Snustad, D.P.2
-
29
-
-
71149083755
-
Hydroxyurea induces hydroxyl radical-mediated cell death in Escherichia coli
-
20005847
-
Davies BW, Kohanski MA, Simmons LA, Winkler JA, Collins JJ, Walker GC. Hydroxyurea induces hydroxyl radical-mediated cell death in Escherichia coli. Molecular cell. 2009; 36(5):845-60. PMID: 20005847. doi: 10.1016/j.molcel.2009.11.024
-
(2009)
Molecular Cell.
, vol.36
, Issue.5
, pp. 845-860
-
-
Davies, B.W.1
Kohanski, M.A.2
Simmons, L.A.3
Winkler, J.A.4
Collins, J.J.5
Walker, G.C.6
-
30
-
-
44649169783
-
Pseudomonas aeruginosa, under DNA replication inhibition, tends to form biofilms via Arr
-
18434096
-
Gotoh H, Zhang Y, Dallo SF, Hong S, Kasaraneni N, Weitao T. Pseudomonas aeruginosa, under DNA replication inhibition, tends to form biofilms via Arr. Research in microbiology. 2008; 159(4):294-302. doi: 10.1016/j.resmic.2008.02.002 PMID: 18434096.
-
(2008)
Research in Microbiology.
, vol.159
, Issue.4
, pp. 294-302
-
-
Gotoh, H.1
Zhang, Y.2
Dallo, S.F.3
Hong, S.4
Kasaraneni, N.5
Weitao, T.6
-
31
-
-
79251553514
-
Contribution of cell elongation to the biofilm formation of Pseudomonas aeruginosa during anaerobic respiration
-
21267455 PubMed Central PMCID: PMC3022656
-
Yoon MY, Lee KM, Park Y, Yoon SS. Contribution of cell elongation to the biofilm formation of Pseudomonas aeruginosa during anaerobic respiration. PLoS One. 2011; 6(1):e16105. doi: 10.1371/journal. pone.0016105 PMID: 21267455; PubMed Central PMCID: PMC3022656.
-
(2011)
PLoS One.
, vol.6
, Issue.1
-
-
Yoon, M.Y.1
Lee, K.M.2
Park, Y.3
Yoon, S.S.4
-
32
-
-
10744229659
-
Comprehensive transposon mutant library of Pseudomonas aeruginosa
-
14617778 Epub 2003/11/18. PubMed Central PMCID: PMC283593[pii]
-
Jacobs MA, Alwood A, Thaipisuttikul I, Spencer D, Haugen E, Ernst S, et al. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A. 2003; 100(24):14339-44. Epub 2003/11/18. doi: 10.1073/pnas.2036282100 2036282100 [pii]. PMID: 14617778; PubMed Central PMCID: PMC283593.
-
(2003)
Proc Natl Acad Sci U S A.
, vol.100
, Issue.24
, pp. 14339-14344
-
-
Jacobs, M.A.1
Alwood, A.2
Thaipisuttikul, I.3
Spencer, D.4
Haugen, E.5
Ernst, S.6
-
33
-
-
33748748996
-
Ribonucleotide reductase modularity: Atypical duplication of the ATP-cone domain in Pseudomonas aeruginosa
-
16829681
-
Torrents E, Westman M, Sahlin M, Sjöberg BM. Ribonucleotide reductase modularity: Atypical duplication of the ATP-cone domain in Pseudomonas aeruginosa. The Journal of biological chemistry. 2006; 281(35):25287-96. doi: 10.1074/jbc.M601794200 PMID: 16829681.
-
(2006)
The Journal of Biological Chemistry.
, vol.281
, Issue.35
, pp. 25287-25296
-
-
Torrents, E.1
Westman, M.2
Sahlin, M.3
Sjöberg, B.M.4
-
34
-
-
0026801917
-
Quantitation of deoxyribonucleoside 5'-triphosphates by a sequential boronate and anion-exchange high-pressure liquid chromatographic procedure
-
1456431 Epub 1992/10/01[pii]
-
Shewach DS. Quantitation of deoxyribonucleoside 5'-triphosphates by a sequential boronate and anion-exchange high-pressure liquid chromatographic procedure. Analytical biochemistry. 1992; 206 (1):178-82. Epub 1992/10/01. doi: S0003-2697(05)80030-2 [pii]. PMID: 1456431.
-
(1992)
Analytical Biochemistry.
, vol.206
, Issue.1
, pp. 178-182
-
-
Shewach, D.S.1
-
35
-
-
0032545258
-
Allosteric regulation of Trypanosoma brucei ribonucleotide reductase studied in vitro and in vivo
-
9852067
-
Hofer A, Ekanem JT, Thelander L. Allosteric regulation of Trypanosoma brucei ribonucleotide reductase studied in vitro and in vivo. The Journal of biological chemistry. 1998; 273(51):34098-104. PMID: 9852067.
-
(1998)
The Journal of Biological Chemistry.
, vol.273
, Issue.51
, pp. 34098-34104
-
-
Hofer, A.1
Ekanem, J.T.2
Thelander, L.3
-
36
-
-
0017795557
-
Ribonucleoside diphosphate reductase (Escherichia coli)
-
357894 Epub 1978/01/01
-
Thelander L, Sjöberg BM, Eriksson S. Ribonucleoside diphosphate reductase (Escherichia coli). Methods Enzymol. 1978; 51:227-37. Epub 1978/01/01. PMID: 357894.
-
(1978)
Methods Enzymol.
, vol.51
, pp. 227-237
-
-
Thelander, L.1
Sjöberg, B.M.2
Eriksson, S.3
-
37
-
-
74249090260
-
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8
-
19768677 PubMed Central PMCID: PMC2922016
-
Krieger E, Joo K, Lee J, Lee J, Raman S, Thompson J, et al. Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins. 2009; 77 Suppl 9:114-22. doi: 10.1002/prot.22570 PMID: 19768677; PubMed Central PMCID: PMC2922016.
-
(2009)
Proteins.
, vol.77
, pp. 114-122
-
-
Krieger, E.1
Joo, K.2
Lee, J.3
Lee, J.4
Raman, S.5
Thompson, J.6
-
38
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
18215316 PubMed Central PMCID: PMC2245901
-
Zhang Y. I-TASSER server for protein 3D structure prediction. BMC bioinformatics. 2008; 9:40. doi: 10. 1186/1471-2105-9-40 PMID: 18215316; PubMed Central PMCID: PMC2245901.
-
(2008)
BMC Bioinformatics.
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
39
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
20360767 PubMed Central PMCID: PMC2849174
-
Roy A, Kucukural A, Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nature protocols. 2010; 5(4):725-38. doi: 10.1038/nprot.2010.5 PMID: 20360767; PubMed Central PMCID: PMC2849174.
-
(2010)
Nature Protocols.
, vol.5
, Issue.4
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
40
-
-
84855945977
-
Assignment of protonation states in proteins and ligands: Combining pKa prediction with hydrogen bonding network optimization
-
22183550
-
Krieger E, Dunbrack RL Jr., Hooft RW, Krieger B. Assignment of protonation states in proteins and ligands: combining pKa prediction with hydrogen bonding network optimization. Methods Mol Biol. 2012; 819:405-21. doi: 10.1007/978-1-61779-465-0-25 PMID: 22183550.
-
(2012)
Methods Mol Biol.
, vol.819
, pp. 405-421
-
-
Krieger, E.1
Dunbrack, R.L.2
Hooft, R.W.3
Krieger, B.4
-
41
-
-
33750528726
-
Fast empirical pKa prediction by Ewald summation
-
16644253
-
Krieger E, Nielsen JE, Spronk CA, Vriend G. Fast empirical pKa prediction by Ewald summation. Journal of molecular graphics & modelling. 2006; 25(4):481-6. doi: 10.1016/j.jmgm.2006.02.009 PMID: 16644253.
-
(2006)
Journal of Molecular Graphics & Modelling.
, vol.25
, Issue.4
, pp. 481-486
-
-
Krieger, E.1
Nielsen, J.E.2
Spronk, C.A.3
Vriend, G.4
-
42
-
-
0008621673
-
Design and use of the microsoft excel solver
-
Fylstra D, Lasdon L, Watson J, Waren A. Design and Use of the Microsoft Excel Solver. INTERFACES. 1998; 28(5):29-55.
-
(1998)
Interfaces
, vol.28
, Issue.5
, pp. 29-55
-
-
Fylstra, D.1
Lasdon, L.2
Watson, J.3
Waren, A.4
-
43
-
-
0037413536
-
SOLVERSTAT: A new utility for multipurpose analysis. An application to the investigation of dioxygenated Co(II) complex formation in dimethylsulfoxide solution
-
Comuzzi C, Polese P, Melchior A, Portanova R, Tolazzi M. SOLVERSTAT: a new utility for multipurpose analysis. An application to the investigation of dioxygenated Co(II) complex formation in dimethylsulfoxide solution. Talanta. 2003; (59: ):67-80.
-
(2003)
Talanta.
, Issue.59
, pp. 67-80
-
-
Comuzzi, C.1
Polese, P.2
Melchior, A.3
Portanova, R.4
Tolazzi, M.5
|