-
3
-
-
73449105727
-
Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters
-
19641535
-
Gao Z, Johnson ZI, Wang GY (2010) Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters. Isme Journal 4:111-120. doi: 10.1038/ismej.2009. 87 PMID: 19641535
-
(2010)
Isme Journal
, vol.4
, pp. 111-120
-
-
Gao, Z.1
Johnson, Z.I.2
Wang, G.Y.3
-
4
-
-
78650752843
-
The role of fungi in processing marine organic matter in the upwelling ecosystem off Chile
-
Gutierrez MH, Pantoja S, Tejos E, Quinones RA (2011) The role of fungi in processing marine organic matter in the upwelling ecosystem off Chile. Marine Biology 158:205-219.
-
(2011)
Marine Biology
, vol.158
, pp. 205-219
-
-
Gutierrez, M.H.1
Pantoja, S.2
Tejos, E.3
Quinones, R.A.4
-
5
-
-
84856738463
-
Community structure of planktonic fungi and the impact of parasitic chytrids on phytoplankton in Lake Inba, Japan
-
21805083
-
Kagami M, Amano Y, Ishii N (2012) Community structure of planktonic fungi and the impact of parasitic chytrids on phytoplankton in Lake Inba, Japan. Microbial Ecology 63:358-368. doi: 10.1007/s00248-011-9913-9 PMID: 21805083
-
(2012)
Microbial Ecology
, vol.63
, pp. 358-368
-
-
Kagami, M.1
Amano, Y.2
Ishii, N.3
-
6
-
-
84873906604
-
Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces
-
Orsi W, Biddle JF, Edgcomb V (2013) Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces. PLoS ONE 8.
-
(2013)
PLoS ONE
, pp. 8
-
-
Orsi, W.1
Biddle, J.F.2
Edgcomb, V.3
-
7
-
-
84864581417
-
Ecosystem processes and interactions in a morass of diversity
-
22715974
-
Prosser JI (2012) Ecosystem processes and interactions in a morass of diversity. FEMS Microbiology Ecology 81:507-519. doi: 10.1111/j.1574-6941.2012.01435.x PMID: 22715974
-
(2012)
FEMS Microbiology Ecology
, vol.81
, pp. 507-519
-
-
Prosser, J.I.1
-
8
-
-
70350261490
-
What is microbial community ecology?
-
19657372
-
Konopka A (2009) What is microbial community ecology? ISME Journal 3:1223-1230. doi: 10.1038/ismej.2009.88 PMID: 19657372
-
(2009)
ISME Journal
, vol.3
, pp. 1223-1230
-
-
Konopka, A.1
-
9
-
-
36849017037
-
Yeast forms dominate fungal diversity in the deep oceans
-
Bass D, Howe A, Brown N, Barton H, Demidova M, et al. (2007) Yeast forms dominate fungal diversity in the deep oceans. Proceedings of the Royal Society B-Biological Sciences 274:3069-3077.
-
(2007)
Proceedings of the Royal Society B-biological Sciences
, vol.274
, pp. 3069-3077
-
-
Bass, D.1
Howe, A.2
Brown, N.3
Barton, H.4
Demidova, M.5
-
10
-
-
70349903138
-
Fungal diversity in Deep-Sea hydrothermal ecosystems
-
19633124
-
Le Calvez T, Burgaud G, Mahe S, Barbier G, Vandenkoornhuyse P (2009) Fungal diversity in Deep-Sea hydrothermal ecosystems. Applied and Environmental Microbiology 75:6415-6421. doi: 10.1128/AEM.00653-09 PMID: 19633124
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 6415-6421
-
-
Le Calvez, T.1
Burgaud, G.2
Mahe, S.3
Barbier, G.4
Vandenkoornhuyse, P.5
-
11
-
-
76049118198
-
Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation
-
20002178
-
Jebaraj CS, Raghukumar C, Behnke A, Stoeck T (2010) Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microbiology Ecology 71:399-412. doi: 10.1111/j.1574-6941.2009.00804.x PMID: 20002178
-
(2010)
FEMS Microbiology Ecology
, vol.71
, pp. 399-412
-
-
Jebaraj, C.S.1
Raghukumar, C.2
Behnke, A.3
Stoeck, T.4
-
12
-
-
84867391874
-
Temporal variation of the small eukaryotic community in two freshwater lakes: Emphasis on zoosporic fungi
-
Lefevre E, Letcher PM, Powell MJ (2012) Temporal variation of the small eukaryotic community in two freshwater lakes: emphasis on zoosporic fungi. Aquatic Microbial Ecology 67:91-105.
-
(2012)
Aquatic Microbial Ecology
, vol.67
, pp. 91-105
-
-
Lefevre, E.1
Letcher, P.M.2
Powell, M.J.3
-
13
-
-
79957993439
-
Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing
-
21635672
-
Monchy S, Sanciu G, Jobard M, Rasconi S, Gerphagnon M, et al. (2011) Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing. Environmental Microbiology 13:1433-1453. doi: 10.1111/j.1462-2920.2011.02444.x PMID: 21635672
-
(2011)
Environmental Microbiology
, vol.13
, pp. 1433-1453
-
-
Monchy, S.1
Sanciu, G.2
Jobard, M.3
Rasconi, S.4
Gerphagnon, M.5
-
14
-
-
84921031062
-
Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing
-
Duarte S, Barlocher F, Trabulo J, Cassio F, Pascoal C (2015) Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing. Fungal Diversity 70:127-148.
-
(2015)
Fungal Diversity
, vol.70
, pp. 127-148
-
-
Duarte, S.1
Barlocher, F.2
Trabulo, J.3
Cassio, F.4
Pascoal, C.5
-
15
-
-
84862611299
-
Coral-associated marine fungi form novel lineages and heterogeneous assemblages
-
22189500
-
Amend AS, Barshis DJ, Oliver TA (2012) Coral-associated marine fungi form novel lineages and heterogeneous assemblages. ISME Journal 6:1291-1301. doi: 10.1038/ismej.2011.193 PMID: 22189500
-
(2012)
ISME Journal
, vol.6
, pp. 1291-1301
-
-
Amend, A.S.1
Barshis, D.J.2
Oliver, T.A.3
-
16
-
-
1942540089
-
Freshwater fungi isolated from eggs of the common carp (Cyprinus carpio) in Thailand
-
Chukanhom K, Hatai K (2004) Freshwater fungi isolated from eggs of the common carp (Cyprinus carpio) in Thailand. Mycoscience 45:42-48.
-
(2004)
Mycoscience
, vol.45
, pp. 42-48
-
-
Chukanhom, K.1
Hatai, K.2
-
17
-
-
77956620252
-
Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand
-
Sakayaroj J, Preedanon S, Supaphon O, Jones EBG, Phongpaichit S (2010) Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand. Fungal Diversity 42:27-45.
-
(2010)
Fungal Diversity
, vol.42
, pp. 27-45
-
-
Sakayaroj, J.1
Preedanon, S.2
Supaphon, O.3
Jones, E.B.G.4
Phongpaichit, S.5
-
18
-
-
0002146058
-
Ascomyceten auf Gefäßpflanzen an Ufern von Gebirgsseen in den Ostalpen
-
Magnes M, Hafellner J (1991) Ascomyceten auf Gefäßpflanzen an Ufern von Gebirgsseen in den Ostalpen. Biblioth Mycol 139:1-182.
-
(1991)
Biblioth Mycol
, vol.139
, pp. 1-182
-
-
Magnes, M.1
Hafellner, J.2
-
19
-
-
1342290150
-
Molecular detection of ascomycetes associated with Fucus serratus
-
15000246
-
Zuccaro A, Schulz B, Mitchell JI (2003) Molecular detection of ascomycetes associated with Fucus serratus. Mycological Research 107:1451-1466. PMID: 15000246
-
(2003)
Mycological Research
, vol.107
, pp. 1451-1466
-
-
Zuccaro, A.1
Schulz, B.2
Mitchell, J.I.3
-
20
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
22454494
-
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109:6241-6246. doi: 10.1073/pnas. 1117018109 PMID: 22454494
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
-
21
-
-
79955749319
-
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
-
21552244
-
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, et al. (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology 29:415-420. doi: 10.1038/nbt.1823 PMID: 21552244
-
(2011)
Nature Biotechnology
, vol.29
, pp. 415-420
-
-
Yilmaz, P.1
Kottmann, R.2
Field, D.3
Knight, R.4
Cole, J.R.5
-
22
-
-
84927125082
-
Culture collections and maintenance of marine fungi
-
Jones EBG, Pang KL, editors, Berlin Boston: Walter de Gruyter
-
Nakagiri A (2012) Culture collections and maintenance of marine fungi. In: Jones EBG, Pang KL, editors. Marine fungi. Berlin Boston: Walter de Gruyter. pp. 501-508.
-
(2012)
Marine Fungi
, pp. 501-508
-
-
Nakagiri, A.1
-
23
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
23193283
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 41:D590-D596. doi: 10.1093/nar/gks1219 PMID: 23193283
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
-
24
-
-
84864134721
-
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
-
22556368
-
Pruesse E, Peplies J, Glockner FO (2012) SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823-1829. doi: 10.1093/bioinformatics/bts252 PMID: 22556368
-
(2012)
Bioinformatics
, vol.28
, pp. 1823-1829
-
-
Pruesse, E.1
Peplies, J.2
Glockner, F.O.3
-
25
-
-
2542523843
-
ARB: A software environment for sequence data
-
14985472
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Research 32:1363-1371. PMID: 14985472
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
-
26
-
-
84941976050
-
Data from: Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched with contextual data
-
Panzer K, Yilmaz P, Weiß M, Reich L, Richter M, et al. (2015) Data from: Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched with contextual data. Dryad Digital Repository.
-
(2015)
Dryad Digital Repository
-
-
Panzer, K.1
Yilmaz, P.2
Weiß, M.3
Reich, L.4
Richter, M.5
-
27
-
-
79955628963
-
Phylogenetic identification of fungi isolated from the marine sponge Tethya aurantium and identification of their secondary metabolites
-
21731550
-
Wiese J, Ohlendorf B, Blumel M, Schmaljohann R, Imhoff JF (2011) Phylogenetic identification of fungi isolated from the marine sponge Tethya aurantium and identification of their secondary metabolites. Marine Drugs 9:561-585. doi: 10.3390/md9040561 PMID: 21731550
-
(2011)
Marine Drugs
, vol.9
, pp. 561-585
-
-
Wiese, J.1
Ohlendorf, B.2
Blumel, M.3
Schmaljohann, R.4
Imhoff, J.F.5
-
28
-
-
0141592617
-
Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics (vol 69, pg 3758, 2003)
-
Gomes NCM, Fagbola O, Costa R, Rumjanek NG, Buchner A, et al. (2003) Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics (vol 69, pg 3758, 2003). Applied and Environmental Microbiology 69:5737-5737.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 5737-5737
-
-
Gomes, N.C.M.1
Fagbola, O.2
Costa, R.3
Rumjanek, N.G.4
Buchner, A.5
-
29
-
-
0025183708
-
Basic local alignment search tool
-
2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215:403-410. PMID: 2231712
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
31
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
15608047
-
Stamatakis A, Ludwig T, Meier H (2005) RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21:456-463. PMID: 15608047
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
32
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
24451623
-
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313. doi: 10.1093/bioinformatics/btu033 PMID: 24451623
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
33
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7:335-336. doi: 10.1038/nmeth.f. 303 PMID: 20383131
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
-
34
-
-
0037224886
-
Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
-
12542711
-
Anderson IC, Campbell CD, Prosser JI (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environmental Microbiology 5:36-47. PMID: 12542711
-
(2003)
Environmental Microbiology
, vol.5
, pp. 36-47
-
-
Anderson, I.C.1
Campbell, C.D.2
Prosser, J.I.3
-
35
-
-
73449128271
-
Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
19710709
-
Hamady M, Lozupone C, Knight R (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. Isme Journal 4:17-27. doi: 10.1038/ismej.2009.97 PMID: 19710709
-
(2010)
Isme Journal
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
37
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks J, Nekrutenko A, Taylor J, Team G (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 11.
-
(2010)
Genome Biology
, pp. 11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
Team, G.4
-
38
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
16169926
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, et al. (2005) Galaxy: A platform for interactive large-scale genome analysis. Genome Research 15:1451-1455. PMID: 16169926
-
(2005)
Genome Research
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
-
40
-
-
51749095104
-
Phylocom: Software for the analysis of phylogenetic community structure and trait evolution
-
18678590
-
Webb CO, Ackerly DD, Kembel SW (2008) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24:2098-2100. doi: 10.1093/bioinformatics/btn358 PMID: 18678590
-
(2008)
Bioinformatics
, vol.24
, pp. 2098-2100
-
-
Webb, C.O.1
Ackerly, D.D.2
Kembel, S.W.3
-
41
-
-
77952957219
-
Diversity and functions of microscopic fungi: A missing component in pelagic food webs
-
Jobard M, Rasconi S, Sime-Ngando T (2010) Diversity and functions of microscopic fungi: a missing component in pelagic food webs. Aquatic Sciences 72:255-268.
-
(2010)
Aquatic Sciences
, vol.72
, pp. 255-268
-
-
Jobard, M.1
Rasconi, S.2
Sime-Ngando, T.3
-
42
-
-
84884204488
-
Diversity, ecological role and potential biotechnological applications of marine fungi associated to the seagrass Posidonia oceanica
-
23410985
-
Panno L, Bruno M, Voyron S, Anastasi A, Gnavi G, et al. (2013) Diversity, ecological role and potential biotechnological applications of marine fungi associated to the seagrass Posidonia oceanica. New Biotechnology 30:685-694. doi: 10.1016/j.nbt.2013.01.010 PMID: 23410985
-
(2013)
New Biotechnology
, vol.30
, pp. 685-694
-
-
Panno, L.1
Bruno, M.2
Voyron, S.3
Anastasi, A.4
Gnavi, G.5
-
44
-
-
0032991127
-
Interspecific interactions among tropical and subtropical freshwater fungi
-
10341055
-
Yuen TK, Hyde KD, Hodgkiss IJ (1999) Interspecific interactions among tropical and subtropical freshwater fungi. Microbial Ecology 37:257-262. PMID: 10341055
-
(1999)
Microbial Ecology
, vol.37
, pp. 257-262
-
-
Yuen, T.K.1
Hyde, K.D.2
Hodgkiss, I.J.3
-
45
-
-
66649119250
-
Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents
-
19239486
-
Burgaud G, Le Calvez T, Arzur D, Vandenkoornhuyse P, Barbier G (2009) Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents. Environmental Microbiology 11:1588-1600. doi: 10.1111/j.1462-2920.2009.01886.x PMID: 19239486
-
(2009)
Environmental Microbiology
, vol.11
, pp. 1588-1600
-
-
Burgaud, G.1
Le Calvez, T.2
Arzur, D.3
Vandenkoornhuyse, P.4
Barbier, G.5
-
46
-
-
36849048226
-
Fungal communities from methane hydratebearing deep-sea marine sediments in South China Sea
-
18059498
-
Lai XT, Cao LX, Tan HM, Fang S, Huang YL, et al. (2007) Fungal communities from methane hydratebearing deep-sea marine sediments in South China Sea. ISME Journal 1:756-762. PMID: 18059498
-
(2007)
ISME Journal
, vol.1
, pp. 756-762
-
-
Lai, X.T.1
Cao, L.X.2
Tan, H.M.3
Fang, S.4
Huang, Y.L.5
-
47
-
-
84855289503
-
Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa
-
22092266
-
Arfi Y, Buee M, Marchand C, Levasseur A, Record E (2012) Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa. FEMS Microbiology Ecology 79:433-444. doi: 10.1111/j.1574-6941.2011.01236.x PMID: 22092266
-
(2012)
FEMS Microbiology Ecology
, vol.79
, pp. 433-444
-
-
Arfi, Y.1
Buee, M.2
Marchand, C.3
Levasseur, A.4
Record, E.5
-
48
-
-
84903794407
-
Distribution and diversity of planktonic fungi in the West Pacific Warm Pool
-
Wang X, Singh P, Gao Z, Zhang XB, Johnson ZI, et al. (2014) Distribution and diversity of planktonic fungi in the West Pacific Warm Pool. PLoS ONE 9.
-
(2014)
PLoS ONE
, pp. 9
-
-
Wang, X.1
Singh, P.2
Gao, Z.3
Zhang, X.B.4
Johnson, Z.I.5
-
49
-
-
84875893142
-
Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost
-
23171292
-
Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, et al. (2013) Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environmental Microbiology 15:1176-1189. doi: 10.1111/1462-2920.12020 PMID: 23171292
-
(2013)
Environmental Microbiology
, vol.15
, pp. 1176-1189
-
-
Bellemain, E.1
Davey, M.L.2
Kauserud, H.3
Epp, L.S.4
Boessenkool, S.5
-
50
-
-
84857055606
-
Fungal diversity in anoxic-sulfidic sediments in a mangrove soil
-
Arfi Y, Marchand C, Wartel M, Record E (2012) Fungal diversity in anoxic-sulfidic sediments in a mangrove soil. Fungal Ecology 5:282-285.
-
(2012)
Fungal Ecology
, vol.5
, pp. 282-285
-
-
Arfi, Y.1
Marchand, C.2
Wartel, M.3
Record, E.4
-
51
-
-
33846102600
-
Unveiling fungal zooflagellates as members of freshwater picoeukaryotes: Evidence from a molecular diversity study in a deep meromictic lake
-
17227412
-
Lefevre E, Bardot C, Noel C, Carrias JF, Viscogliosi E, et al. (2007) Unveiling fungal zooflagellates as members of freshwater picoeukaryotes: evidence from a molecular diversity study in a deep meromictic lake. Environmental Microbiology 9:61-71. PMID: 17227412
-
(2007)
Environmental Microbiology
, vol.9
, pp. 61-71
-
-
Lefevre, E.1
Bardot, C.2
Noel, C.3
Carrias, J.F.4
Viscogliosi, E.5
-
52
-
-
84857508990
-
Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments
-
21985648
-
Bik HM, Sung W, De Ley P, Baldwin JG, Sharma J, et al. (2012) Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments. Molecular Ecology 21:1048-1059. doi: 10.1111/j.1365-294X.2011.05297.x PMID: 21985648
-
(2012)
Molecular Ecology
, vol.21
, pp. 1048-1059
-
-
Bik, H.M.1
Sung, W.2
De Ley, P.3
Baldwin, J.G.4
Sharma, J.5
-
53
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
20331767
-
Stoeck T, Bass D, Nebel M, Christen R, Jones MDM, et al. (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology 19:21-31. doi: 10.1111/j.1365-294X.2009.04480.x PMID: 20331767
-
(2010)
Molecular Ecology
, vol.19
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.M.5
-
54
-
-
84875012571
-
Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: New insights into the freshwater protist diversity
-
Taib N, Mangot JF, Domaizon I, Bronner G, Debroas D (2013) Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: New insights into the freshwater protist diversity. PLoS ONE 8.
-
(2013)
PLoS ONE
, pp. 8
-
-
Taib, N.1
Mangot, J.F.2
Domaizon, I.3
Bronner, G.4
Debroas, D.5
-
55
-
-
0037545765
-
Determining diversity of freshwater fungi on decaying leaves: Comparison of traditional and molecular approaches
-
12732520
-
Nikolcheva LG, Cockshutt AM, Barlocher F (2003) Determining diversity of freshwater fungi on decaying leaves: Comparison of traditional and molecular approaches. Applied and Environmental Microbiology 69:2548-2554. PMID: 12732520
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 2548-2554
-
-
Nikolcheva, L.G.1
Cockshutt, A.M.2
Barlocher, F.3
-
56
-
-
82455209220
-
Marine fungi: Their ecology and molecular diversity
-
22457985
-
Richards TA, Jones MDM, Leonard G, Bass D (2012) Marine fungi: Their ecology and molecular diversity. Annual Review of Marine Science, Vol 4 4:495-522. PMID: 22457985
-
(2012)
Annual Review of Marine Science
, vol.4
, Issue.4
, pp. 495-522
-
-
Richards, T.A.1
Jones, M.D.M.2
Leonard, G.3
Bass, D.4
-
57
-
-
19344366809
-
UNITE: A database providing web-based methods for the molecular identification of ectomycorrhizal fungi
-
15869663
-
Kõljalg U, Larsson KH, Abarenkov K, Nilsson RH, Alexander IJ, et al. (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist 166:1063-1068. PMID: 15869663
-
(2005)
New Phytologist
, vol.166
, pp. 1063-1068
-
-
Kõljalg, U.1
Larsson, K.H.2
Abarenkov, K.3
Nilsson, R.H.4
Alexander, I.J.5
-
58
-
-
84875643231
-
Fungal diversity from various marine habitats deduced through culture-independent studies
-
23363246
-
Manohar CS, Raghukumar C (2013) Fungal diversity from various marine habitats deduced through culture-independent studies. FEMS Microbiology Letters 341:69-78. doi: 10.1111/1574-6968.12087 PMID: 23363246
-
(2013)
FEMS Microbiology Letters
, vol.341
, pp. 69-78
-
-
Manohar, C.S.1
Raghukumar, C.2
-
59
-
-
80052881551
-
Are there more marine fungi to be described?
-
Jones EBG (2011) Are there more marine fungi to be described? Botanica Marina 54:343-354.
-
(2011)
Botanica Marina
, vol.54
, pp. 343-354
-
-
Jones, E.B.G.1
-
60
-
-
79953739390
-
Fungal community analysis in the Deep-Sea sediments of the Central Indian Basin by culture-independent approach
-
21057784
-
Singh P, Raghukumar C, Verma P, Shouche Y (2011) Fungal community analysis in the Deep-Sea sediments of the Central Indian Basin by culture-independent approach. Microbial Ecology 61:507-517. doi: 10.1007/s00248-010-9765-8 PMID: 21057784
-
(2011)
Microbial Ecology
, vol.61
, pp. 507-517
-
-
Singh, P.1
Raghukumar, C.2
Verma, P.3
Shouche, Y.4
-
61
-
-
84875365733
-
Phylogenetic conservatism of functional traits in microorganisms
-
23235290
-
Martiny AC, Treseder K, Pusch G (2013) Phylogenetic conservatism of functional traits in microorganisms. ISME Journal 7:830-838. doi: 10.1038/ismej.2012.160 PMID: 23235290
-
(2013)
ISME Journal
, vol.7
, pp. 830-838
-
-
Martiny, A.C.1
Treseder, K.2
Pusch, G.3
-
62
-
-
33847006909
-
Fungal biodiversity in aquatic habitats
-
Shearer CA, Descals E, Kohlmeyer B, Kohlmeyer J, Marvanova L, et al. (2007) Fungal biodiversity in aquatic habitats. Biodiversity and Conservation 16:49-67.
-
(2007)
Biodiversity and Conservation
, vol.16
, pp. 49-67
-
-
Shearer, C.A.1
Descals, E.2
Kohlmeyer, B.3
Kohlmeyer, J.4
Marvanova, L.5
-
64
-
-
84893725900
-
Basidiomycota
-
Jones EBG, Pang KL, editors, Berlin Boston: Walter de Gruyter
-
Jones EBG, Fell JW (2012) Basidiomycota. In: Jones EBG, Pang KL, editors. Marine Fungiand fungallike organisms. Berlin Boston: Walter de Gruyter. pp. 49-64.
-
(2012)
Marine Fungiand Fungallike Organisms
, pp. 49-64
-
-
Jones, E.B.G.1
Fell, J.W.2
-
65
-
-
79958294748
-
Discovery of novel intermediate forms redefines the fungal tree of life
-
21562490
-
Jones MDM, Forn I, Gadelha C, Egan MJ, Bass D, et al. (2011) Discovery of novel intermediate forms redefines the fungal tree of life. Nature 474:200-U234. doi: 10.1038/nature09984 PMID: 21562490
-
(2011)
Nature
, vol.474
, pp. 200-U234
-
-
Jones, M.D.M.1
Forn, I.2
Gadelha, C.3
Egan, M.J.4
Bass, D.5
-
66
-
-
84881260284
-
Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets
-
23461624
-
Livermore JA, Mattes TE (2013) Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets. Environmental Microbiology 15:2333-2341. doi: 10.1111/1462-2920.12106 PMID: 23461624
-
(2013)
Environmental Microbiology
, vol.15
, pp. 2333-2341
-
-
Livermore, J.A.1
Mattes, T.E.2
-
67
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
19726194
-
Logares R, Brate J, Bertilsson S, Clasen JL, Shalchian-Tabrizi K, et al. (2009) Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology 17:414-422. doi: 10.1016/j.tim.2009. 05.010 PMID: 19726194
-
(2009)
Trends in Microbiology
, vol.17
, pp. 414-422
-
-
Logares, R.1
Brate, J.2
Bertilsson, S.3
Clasen, J.L.4
Shalchian-Tabrizi, K.5
-
68
-
-
0003864671
-
-
Ann Arbor, USA: University of Michigan Press
-
Sparrow FK (1960) Aquatic Phycomycetes. Ann Arbor, USA: University of Michigan Press.
-
(1960)
Aquatic Phycomycetes
-
-
Sparrow, F.K.1
-
69
-
-
0002891190
-
Chytridiomycota
-
McLaughlin DJ, McLaughlin EG, Lemke P, editors, New York, NY: Springer-Verlag
-
Barr DJS (2001) Chytridiomycota. In: McLaughlin DJ, McLaughlin EG, Lemke P, editors. The Mycota. New York, NY: Springer-Verlag. pp. 93-112.
-
(2001)
The Mycota
, pp. 93-112
-
-
Barr, D.J.S.1
-
70
-
-
0001693392
-
Energy flow in Bear Brook, New Hampshire-Integrative approach to stream ecosystem metabolism
-
Fisher SG, Likens GE (1973) Energy flow in Bear Brook, New Hampshire-Integrative approach to stream ecosystem metabolism. Ecological Monographs 43:421-439.
-
(1973)
Ecological Monographs
, vol.43
, pp. 421-439
-
-
Fisher, S.G.1
Likens, G.E.2
-
71
-
-
0032410952
-
Release of dissolved organic carbon (DOC) from sediments of the NW European Continental Margin (Goban Spur) and its significance for benthic carbon cycling
-
Otto S, Balzer W (1998) Release of dissolved organic carbon (DOC) from sediments of the NW European Continental Margin (Goban Spur) and its significance for benthic carbon cycling. Progress in Oceanography 42:127-144.
-
(1998)
Progress in Oceanography
, vol.42
, pp. 127-144
-
-
Otto, S.1
Balzer, W.2
-
72
-
-
77956583568
-
The response of dissolved organic carbon (DOC) and the ecosystem carbon balance to experimental drought in a temperate shrubland
-
Sowerby A, Emmett BA, Williams D, Beier C, Evans CD (2010) The response of dissolved organic carbon (DOC) and the ecosystem carbon balance to experimental drought in a temperate shrubland. European Journal of Soil Science 61:697-709.
-
(2010)
European Journal of Soil Science
, vol.61
, pp. 697-709
-
-
Sowerby, A.1
Emmett, B.A.2
Williams, D.3
Beier, C.4
Evans, C.D.5
-
73
-
-
0028994840
-
Bacteria, fungi and the breakdown of leaf-litter in a large river
-
Baldy V, Gessner MO, Chauvet E (1995) Bacteria, fungi and the breakdown of leaf-litter in a large river. Oikos 74:93-102.
-
(1995)
Oikos
, vol.74
, pp. 93-102
-
-
Baldy, V.1
Gessner, M.O.2
Chauvet, E.3
-
75
-
-
0033027446
-
A perspective on leaf litter breakdown in streams
-
Gessner MO, Chauvet E, Dobson M (1999) A perspective on leaf litter breakdown in streams. Oikos 85:377-384.
-
(1999)
Oikos
, vol.85
, pp. 377-384
-
-
Gessner, M.O.1
Chauvet, E.2
Dobson, M.3
-
76
-
-
84867692225
-
Diversity and distribution of fungal communities in lakes of Antarctica
-
22671312
-
Goncalves VN, Vaz ABM, Rosa CA, Rosa LH (2012) Diversity and distribution of fungal communities in lakes of Antarctica. FEMS Microbiology Ecology 82:459-471. doi: 10.1111/j.1574-6941.2012.01424.x PMID: 22671312
-
(2012)
FEMS Microbiology Ecology
, vol.82
, pp. 459-471
-
-
Goncalves, V.N.1
Vaz, A.B.M.2
Rosa, C.A.3
Rosa, L.H.4
-
79
-
-
84877972772
-
Shallow coastal lagoon sediment characteristics and water physicochemical parameters-Myrtari Lagoon, Mediterranean Sea, Western Greece
-
Avramidis P, Bekiari V, Kontopoulos N, Kokidis N (2013) Shallow coastal lagoon sediment characteristics and water physicochemical parameters-Myrtari Lagoon, Mediterranean Sea, Western Greece. Fresenius Environmental Bulletin 22:1628-1635.
-
(2013)
Fresenius Environmental Bulletin
, vol.22
, pp. 1628-1635
-
-
Avramidis, P.1
Bekiari, V.2
Kontopoulos, N.3
Kokidis, N.4
-
80
-
-
0041125886
-
Sedimentary organic matter preservation: A test for selective degradation under oxic conditions
-
Hedges JI, Hu FS, Devol AH, Hartnett HE, Tsamakis E, et al. (1999) Sedimentary organic matter preservation: A test for selective degradation under oxic conditions. American Journal of Science 299:529-555.
-
(1999)
American Journal of Science
, vol.299
, pp. 529-555
-
-
Hedges, J.I.1
Hu, F.S.2
Devol, A.H.3
Hartnett, H.E.4
Tsamakis, E.5
-
81
-
-
80051952079
-
Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments
-
21605311
-
Nagahama T, Takahashi E, Nagano Y, Abdel-Wahab MA, Miyazaki M (2011) Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments. Environmental Microbiology 13:2359-2370. doi: 10.1111/j.1462-2920.2011.02507.x PMID: 21605311
-
(2011)
Environmental Microbiology
, vol.13
, pp. 2359-2370
-
-
Nagahama, T.1
Takahashi, E.2
Nagano, Y.3
Abdel-Wahab, M.A.4
Miyazaki, M.5
-
82
-
-
34347348108
-
Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: Surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
-
17426921
-
Takishita K, Yubuki N, Kakizoe N, Inagaki Y, Maruyama T (2007) Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles 11:563-576. PMID: 17426921
-
(2007)
Extremophiles
, vol.11
, pp. 563-576
-
-
Takishita, K.1
Yubuki, N.2
Kakizoe, N.3
Inagaki, Y.4
Maruyama, T.5
-
83
-
-
58549102694
-
Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis
-
Tian F, Yu Y, Chen B, Li HR, Yao YF, et al. (2009) Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis. Polar Biology 32:93-103.
-
(2009)
Polar Biology
, vol.32
, pp. 93-103
-
-
Tian, F.1
Yu, Y.2
Chen, B.3
Li, H.R.4
Yao, Y.F.5
-
84
-
-
0141704503
-
Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean sea)
-
12957957
-
Stoeck T, Taylor GT, Epstein SS (2003) Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean sea). Applied and Environmental Microbiology 69:5656-5663. PMID: 12957957
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 5656-5663
-
-
Stoeck, T.1
Taylor, G.T.2
Epstein, S.S.3
-
85
-
-
32344437178
-
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
-
16431157
-
Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157:31-43. PMID: 16431157
-
(2006)
Protist
, vol.157
, pp. 31-43
-
-
Stoeck, T.1
Hayward, B.2
Taylor, G.T.3
Varela, R.4
Epstein, S.S.5
-
86
-
-
0003994175
-
Aquatic fungi
-
Booth C, editor, New York: Academic Press
-
Jones EBG (1971) Aquatic fungi. In: Booth C, editor. Methods in microbiology. New York: Academic Press. pp. 731-742.
-
(1971)
Methods in Microbiology
, pp. 731-742
-
-
Jones, E.B.G.1
-
87
-
-
84941947945
-
The role of terrestrially derived organic carbon in the coastal ocean: A changing paradigm and the priming effect (vol 108, pg 19473, 2011)
-
Bianchi TS (2012) The role of terrestrially derived organic carbon in the coastal ocean: A changing paradigm and the priming effect (vol 108, pg 19473, 2011). Proceedings of the National Academy of Sciences of the United States of America 109.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, pp. 109
-
-
Bianchi, T.S.1
-
88
-
-
84862014222
-
Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the North Pole at the end of the polar night
-
Bachy C, Lopez-Garcia P, Vereshchaka A, Moreira D (2011) Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the North Pole at the end of the polar night. Frontiers in Microbiology 2.
-
(2011)
Frontiers in Microbiology
, pp. 2
-
-
Bachy, C.1
Lopez-Garcia, P.2
Vereshchaka, A.3
Moreira, D.4
-
89
-
-
44849128805
-
Species divergence and the measurement of microbial diversity
-
18435746
-
Lozupone CA, Knight R (2008) Species divergence and the measurement of microbial diversity. FEMS Microbiology Reviews 32:557-578. doi: 10.1111/j.1574-6976.2008.00111.x PMID: 18435746
-
(2008)
FEMS Microbiology Reviews
, vol.32
, pp. 557-578
-
-
Lozupone, C.A.1
Knight, R.2
-
91
-
-
84891605962
-
Families of dothideomycetes
-
Hyde KD, Jones EBG, Liu JK, Ariyawansa H, Boehm E, et al. (2013) Families of Dothideomycetes. Fungal Diversity 63:1-313.
-
(2013)
Fungal Diversity
, vol.63
, pp. 1-313
-
-
Hyde, K.D.1
Jones, E.B.G.2
Liu, J.K.3
Ariyawansa, H.4
Boehm, E.5
-
92
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
-
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2012) Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Plos Pathogens 8.
-
(2012)
Plos Pathogens
, pp. 8
-
-
Ohm, R.A.1
Feau, N.2
Henrissat, B.3
Schoch, C.L.4
Horwitz, B.A.5
-
93
-
-
0009011409
-
Mycophagy in grasshoppers (Orthoptera, Acrididae) in Indo-Malayan rain forests
-
Monk KA, Samuels GJ (1990) Mycophagy in grasshoppers (Orthoptera, Acrididae) in Indo-Malayan rain forests. Biotropica 22:16-21.
-
(1990)
Biotropica
, vol.22
, pp. 16-21
-
-
Monk, K.A.1
Samuels, G.J.2
-
94
-
-
84874921990
-
Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities
-
22957194
-
Danielsen L, Thurmer A, Meinicke P, Buee M, Morin E, et al. (2012) Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities. Ecology and Evolution 2:1935-1948. doi: 10.1002/ece3.305 PMID: 22957194
-
(2012)
Ecology and Evolution
, vol.2
, pp. 1935-1948
-
-
Danielsen, L.1
Thurmer, A.2
Meinicke, P.3
Buee, M.4
Morin, E.5
-
95
-
-
79953029749
-
Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis
-
21048801
-
Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S (2011) Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis. ISME Journal 5:590-600. doi: 10. 1038/ismej.2010.164 PMID: 21048801
-
(2011)
ISME Journal
, vol.5
, pp. 590-600
-
-
Burke, C.1
Thomas, T.2
Lewis, M.3
Steinberg, P.4
Kjelleberg, S.5
-
96
-
-
84927165698
-
Enzymes from marine fungi: Current research and future prospects
-
Jones EBG, Pang KL, editors, Berlin Boston: Walter de Gruyter
-
Velmurugan N, Lee YS (2012) Enzymes from marine fungi: current research and future prospects. In: Jones EBG, Pang KL, editors. Marine fungi and fungal-like organisms. Berlin Boston: Walter de Gruyter. pp. 441-474.
-
(2012)
Marine Fungi and Fungal-like Organisms
, pp. 441-474
-
-
Velmurugan, N.1
Lee, Y.S.2
-
97
-
-
84926459082
-
Decomposition of materials in the sea
-
Jones EBG, Pang KL, editors
-
Sridhar KR (2012) Decomposition of materials in the sea. In: Jones EBG, Pang KL, editors. Marine fungi and fungal-like organisms. pp. 475-500.
-
(2012)
Marine Fungi and Fungal-like Organisms
, pp. 475-500
-
-
Sridhar, K.R.1
-
98
-
-
84884417424
-
Elemental composition and degree of homeostasis of fungi: Are aquatic hyphomycetes more like metazoans, bacteria or plants?
-
Danger M, Chauvet E (2013) Elemental composition and degree of homeostasis of fungi: are aquatic hyphomycetes more like metazoans, bacteria or plants? Fungal Ecology 6:453-457.
-
(2013)
Fungal Ecology
, vol.6
, pp. 453-457
-
-
Danger, M.1
Chauvet, E.2
|