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Volumn 21, Issue 10, 2015, Pages 2367-2378

Reproducible, quantitative, and flexible molecular subtyping of clinical DLBCL samples using the NanoString nCounter system

Author keywords

[No Author keywords available]

Indexed keywords

FOSTAMATINIB; TRANSCRIPTOME; TUMOR MARKER;

EID: 84941947871     PISSN: 10780432     EISSN: 15573265     Source Type: Journal    
DOI: 10.1158/1078-0432.CCR-14-0357     Document Type: Article
Times cited : (61)

References (40)
  • 2
    • 27644488026 scopus 로고    scopus 로고
    • Diffuse large Bcell lymphoma subgroups have distinct genetic profiles that influence tumor biology and improve gene-expression-based survival prediction
    • Bea S, Zettl A, Wright G, Salaverria I, Jehn P, Moreno V, et al. Diffuse large Bcell lymphoma subgroups have distinct genetic profiles that influence tumor biology and improve gene-expression-based survival prediction. Blood 2005;106:3183-90.
    • (2005) Blood , vol.106 , pp. 3183-3190
    • Bea, S.1    Zettl, A.2    Wright, G.3    Salaverria, I.4    Jehn, P.5    Moreno, V.6
  • 3
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-11.
    • (2000) Nature , vol.403 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3    Ma, C.4    Lossos, I.S.5    Rosenwald, A.6
  • 4
    • 0043192901 scopus 로고    scopus 로고
    • A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma
    • Wright G, Tan B, Rosenwald A, Hurt EH, Wiestner A, Staudt LM. A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma. Proc Natl Acad Sci U S A 2003;100: 9991-6.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9991-9996
    • Wright, G.1    Tan, B.2    Rosenwald, A.3    Hurt, E.H.4    Wiestner, A.5    Staudt, L.M.6
  • 6
    • 67650398258 scopus 로고    scopus 로고
    • Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma
    • Dunleavy K, Pittaluga S, Czuczman MS, Dave SS, Wright G, Grant N, et al. Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma. Blood 2009;113:6069-76.
    • (2009) Blood , vol.113 , pp. 6069-6076
    • Dunleavy, K.1    Pittaluga, S.2    Czuczman, M.S.3    Dave, S.S.4    Wright, G.5    Grant, N.6
  • 7
    • 84941979933 scopus 로고    scopus 로고
    • The Bruton's tyrosine kinase (BTK) inhibitor, ibrutinib (PCI-32765), has preferential activity in the activated B cell-like (ABC) subtype of relapse/refractory (R/R) DLBCL: Interim phase 2 results [abstract]
    • 2013 Jun 13-16; Stockholm, Sweden. The Hague, the Netherlands: EHA; Abstract nr S1180
    • de Vos S, Wilson W, Gerecitano J, Goy A, Kenkre V, Barr P, et al. The Bruton's tyrosine kinase (BTK) inhibitor, ibrutinib (PCI-32765), has preferential activity in the activated B cell-like (ABC) subtype of relapse/refractory (R/R) DLBCL: interim phase 2 results [abstract]. In: Proceedings of the 18th Congress of the European Hematology Association; 2013 Jun 13-16; Stockholm, Sweden. The Hague, the Netherlands: EHA; 2013. Abstract nr S1180.
    • (2013) Proceedings of the 18th Congress of the European Hematology Association
    • De Vos, S.1    Wilson, W.2    Gerecitano, J.3    Goy, A.4    Kenkre, V.5    Barr, P.6
  • 9
    • 84890766832 scopus 로고    scopus 로고
    • Poor concordance among nine immunohistochemistry classifiers of cell-oforigin for diffuse large B-cell lymphoma: Implications for therapeutic strategies
    • Coutinho R, Clear AJ, Owen A, Wilson A, Matthews J, Lee A, et al. Poor concordance among nine immunohistochemistry classifiers of cell-oforigin for diffuse large B-cell lymphoma: implications for therapeutic strategies. Clin Cancer Res 2013;19:6686-95.
    • (2013) Clin Cancer Res , vol.19 , pp. 6686-6695
    • Coutinho, R.1    Clear, A.J.2    Owen, A.3    Wilson, A.4    Matthews, J.5    Lee, A.6
  • 10
    • 9144237554 scopus 로고    scopus 로고
    • Confirmation of the molecular classification of diffuse large B-cell lymphoma by immunohistochemistry using a tissue microarray
    • Hans CP, Weisenburger DD, Greiner TC, Gascoyne RD, Delabie J, Ott G, et al. Confirmation of the molecular classification of diffuse large B-cell lymphoma by immunohistochemistry using a tissue microarray. Blood 2004;103:275-82.
    • (2004) Blood , vol.103 , pp. 275-282
    • Hans, C.P.1    Weisenburger, D.D.2    Greiner, T.C.3    Gascoyne, R.D.4    Delabie, J.5    Ott, G.6
  • 11
    • 78649742465 scopus 로고    scopus 로고
    • Immunoblastic morphology but not the immunohistochemical GCB/nonGCB classifier predicts outcome in diffuse large B-cell lymphoma in the RICOVER-60 trial of the DSHNHL
    • Ott G, Ziepert M, Klapper W, Horn H, Szczepanowski M, Bernd HW, et al. Immunoblastic morphology but not the immunohistochemical GCB/nonGCB classifier predicts outcome in diffuse large B-cell lymphoma in the RICOVER-60 trial of the DSHNHL. Blood 2010;116:4916-25.
    • (2010) Blood , vol.116 , pp. 4916-4925
    • Ott, G.1    Ziepert, M.2    Klapper, W.3    Horn, H.4    Szczepanowski, M.5    Bernd, H.W.6
  • 12
    • 34548797534 scopus 로고    scopus 로고
    • Quantitative nuclease protection assay in paraffin-embedded tissue replicates prognostic microarray gene expression in diffuse large-B-cell lymphoma
    • Roberts RA, Sabalos CM, Le Blanc ML, Martel RR, Frutiger YM, Unger JM, et al. Quantitative nuclease protection assay in paraffin-embedded tissue replicates prognostic microarray gene expression in diffuse large-B-cell lymphoma. Lab Invest 2007;87:979-97.
    • (2007) Lab Invest , vol.87 , pp. 979-997
    • Roberts, R.A.1    Sabalos, C.M.2    Le Blanc, M.L.3    Martel, R.R.4    Frutiger, Y.M.5    Unger, J.M.6
  • 13
    • 79957887434 scopus 로고    scopus 로고
    • Accurate classification of diffuse large B-cell lymphoma into germinal center and activated B-cell subtypes using a nuclease protection assay on formalin-fixed, paraffin-embedded tissues
    • Rimsza LM, Wright G, Schwartz M, Chan WC, Jaffe ES, Gascoyne RD, et al. Accurate classification of diffuse large B-cell lymphoma into germinal center and activated B-cell subtypes using a nuclease protection assay on formalin-fixed, paraffin-embedded tissues. Clin Cancer Res 2011;17: 3727-32.
    • (2011) Clin Cancer Res , vol.17 , pp. 3727-3732
    • Rimsza, L.M.1    Wright, G.2    Schwartz, M.3    Chan, W.C.4    Jaffe, E.S.5    Gascoyne, R.D.6
  • 14
    • 84884539984 scopus 로고    scopus 로고
    • Gene expression profiling using nanostring digital RNA counting to identify potential target antigens for melanoma immunotherapy
    • Beard RE, Abate-Daga D, Rosati SF, Zheng Z, Wunderlich JR, Rosenberg SA, et al. Gene expression profiling using nanostring digital RNA counting to identify potential target antigens for melanoma immunotherapy. Clin Cancer Res 2013;19:4941-50.
    • (2013) Clin Cancer Res , vol.19 , pp. 4941-4950
    • Beard, R.E.1    Abate-Daga, D.2    Rosati, S.F.3    Zheng, Z.4    Wunderlich, J.R.5    Rosenberg, S.A.6
  • 15
    • 79955674240 scopus 로고    scopus 로고
    • mRNA transcript quantification in archival samples using multiplexed, color-coded probes
    • Reis PP, Waldron L, Goswami RS, Xu W, Xuan Y, Perez-Ordonez B, et al. mRNA transcript quantification in archival samples using multiplexed, color-coded probes. BMC Biotechnol 2011;11:46.
    • (2011) BMC Biotechnol , vol.11 , pp. 46
    • Reis, P.P.1    Waldron, L.2    Goswami, R.S.3    Xu, W.4    Xuan, Y.5    Perez-Ordonez, B.6
  • 16
    • 84862680481 scopus 로고    scopus 로고
    • Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples
    • Northcott PA, Shih DJ, Remke M, Cho YJ, Kool M, Hawkins C, et al. Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples. Acta Neuropathol 2012;123:615-26.
    • (2012) Acta Neuropathol , vol.123 , pp. 615-626
    • Northcott, P.A.1    Shih, D.J.2    Remke, M.3    Cho, Y.J.4    Kool, M.5    Hawkins, C.6
  • 19
    • 46249119591 scopus 로고    scopus 로고
    • Germinal center B cell-like (GCB) and activated B cell-like (ABC) type of diffuse large B cell lymphoma (DLBCL): Analysis of molecular predictors, signatures, cell cycle state and patient survival
    • Blenk S, Engelmann J, Weniger M, Schultz J, Dittrich M, Rosenwald A, et al. Germinal center B cell-like (GCB) and activated B cell-like (ABC) type of diffuse large B cell lymphoma (DLBCL): analysis of molecular predictors, signatures, cell cycle state and patient survival. Cancer Inform 2007;3:399-420.
    • (2007) Cancer Inform , vol.3 , pp. 399-420
    • Blenk, S.1    Engelmann, J.2    Weniger, M.3    Schultz, J.4    Dittrich, M.5    Rosenwald, A.6
  • 21
    • 33744960411 scopus 로고    scopus 로고
    • A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling
    • Hummel M, Bentink S, Berger H, Klapper W, Wessendorf S, Barth TFE, et al. A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling. N Engl J Med 2006;354:2419-30.
    • (2006) N Engl J Med , vol.354 , pp. 2419-2430
    • Hummel, M.1    Bentink, S.2    Berger, H.3    Klapper, W.4    Wessendorf, S.5    Barth, T.F.E.6
  • 22
    • 84941979934 scopus 로고    scopus 로고
    • https://www.oncomine.org/resource/login.html.
  • 23
    • 20144382754 scopus 로고    scopus 로고
    • Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response
    • Monti S, Savage KJ, Kutok JL, Feuerhake F, Kurtin P, Mihm M, et al. Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response. Blood 2005;105:1851-61.
    • (2005) Blood , vol.105 , pp. 1851-1861
    • Monti, S.1    Savage, K.J.2    Kutok, J.L.3    Feuerhake, F.4    Kurtin, P.5    Mihm, M.6
  • 25
    • 79953323846 scopus 로고    scopus 로고
    • Protein kinase C inhibitor sotrastaurin selectively inhibits the growth of CD79 mutant diffuse large B-cell lymphomas
    • Naylor TL, Tang H, Ratsch BA, Enns A, Loo A, Chen L, et al. Protein kinase C inhibitor sotrastaurin selectively inhibits the growth of CD79 mutant diffuse large B-cell lymphomas. Cancer Res 2011;71:2643-53.
    • (2011) Cancer Res , vol.71 , pp. 2643-2653
    • Naylor, T.L.1    Tang, H.2    Ratsch, B.A.3    Enns, A.4    Loo, A.5    Chen, L.6
  • 26
    • 33645306041 scopus 로고    scopus 로고
    • A loss-of-function RNA interference screen for molecular targets in cancer
    • Ngo VN, Davis RE, Lamy L, Yu X, Zhao H, Lenz G, et al. A loss-of-function RNA interference screen for molecular targets in cancer. Nature 2006; 441:106-10.
    • (2006) Nature , vol.441 , pp. 106-110
    • Ngo, V.N.1    Davis, R.E.2    Lamy, L.3    Yu, X.4    Zhao, H.5    Lenz, G.6
  • 27
    • 84941979935 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1227194.
  • 28
    • 84859576433 scopus 로고    scopus 로고
    • Microarray gene expression analysis of fixed archival tissue permits molecular classification and identification of potential therapeutic targets in diffuse large B-cell lymphoma
    • Linton K, Howarth C, Wappett M, Newton G, Lachel C, Iqbal J, et al. Microarray gene expression analysis of fixed archival tissue permits molecular classification and identification of potential therapeutic targets in diffuse large B-cell lymphoma. J Mol Diagn 2012;14:223-32.
    • (2012) J Mol Diagn , vol.14 , pp. 223-232
    • Linton, K.1    Howarth, C.2    Wappett, M.3    Newton, G.4    Lachel, C.5    Iqbal, J.6
  • 29
    • 54049147790 scopus 로고    scopus 로고
    • Gene expression predicts overall survival in paraffin-embedded tissues of diffuse large B-cell lymphoma treated with R-CHOP
    • Rimsza LM, Leblanc ML, Unger JM, Miller TP, Grogan TM, Persky DO, et al. Gene expression predicts overall survival in paraffin-embedded tissues of diffuse large B-cell lymphoma treated with R-CHOP. Blood 2008;112: 3425-33.
    • (2008) Blood , vol.112 , pp. 3425-3433
    • Rimsza, L.M.1    Leblanc, M.L.2    Unger, J.M.3    Miller, T.P.4    Grogan, T.M.5    Persky, D.O.6
  • 32
    • 0037142053 scopus 로고    scopus 로고
    • The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
    • Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, et al. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 2002;346: 1937-47.
    • (2002) N Engl J Med , vol.346 , pp. 1937-1947
    • Rosenwald, A.1    Wright, G.2    Chan, W.C.3    Connors, J.M.4    Campo, E.5    Fisher, R.I.6
  • 33
    • 0023275274 scopus 로고
    • Molecular analysis of the t(14;18) chromosomal translocation in malignant lymphomas
    • Weiss LM, Warnke RA, Sklar J, Cleary ML. Molecular analysis of the t(14;18) chromosomal translocation in malignant lymphomas. N Engl J Med 1987;317:1185-9.
    • (1987) N Engl J Med , vol.317 , pp. 1185-1189
    • Weiss, L.M.1    Warnke, R.A.2    Sklar, J.3    Cleary, M.L.4
  • 34
    • 68549124173 scopus 로고    scopus 로고
    • A new immunostain algorithm classifies diffuse large B-cell lymphoma into molecular subtypes with high accuracy
    • Choi WL, Weisenburger DD, Greiner TC, et al. A new immunostain algorithm classifies diffuse large B-cell lymphoma into molecular subtypes with high accuracy. Clin Cancer Res 2009;15:5494.
    • (2009) Clin Cancer Res , vol.15 , pp. 5494
    • Choi, W.L.1    Weisenburger, D.D.2    Greiner, T.C.3
  • 35
    • 33845386258 scopus 로고    scopus 로고
    • Immunohistochemical classification of de novo, transformed, and relapsed diffuse large B-cell lymphoma into germinal center B-cell and nongerminal center B-cell subtypes correlates with gene expression profile and patient survival
    • Haarer CF, Roberts RA, Frutiger YM, Grogan TM, Rimsza LM. Immunohistochemical classification of de novo, transformed, and relapsed diffuse large B-cell lymphoma into germinal center B-cell and nongerminal center B-cell subtypes correlates with gene expression profile and patient survival. Arch Pathol Lab Med 2006;130:1819-24
    • (2006) Arch Pathol Lab Med , vol.130 , pp. 1819-1824
    • Haarer, C.F.1    Roberts, R.A.2    Frutiger, Y.M.3    Grogan, T.M.4    Rimsza, L.M.5
  • 36
    • 84899136028 scopus 로고    scopus 로고
    • Determining cell-of-origin subtypes of diffuse large B-cell lymphoma using gene expression in formalin-fixed paraffin embedded tissue
    • Scott DW, Wright GW, Williams PM, Lih C-J, Walsh W, Jaffe ES, et al. Determining cell-of-origin subtypes of diffuse large B-cell lymphoma using gene expression in formalin-fixed paraffin embedded tissue. Blood 2014;123:1214-7.
    • (2014) Blood , vol.123 , pp. 1214-1217
    • Scott, D.W.1    Wright, G.W.2    Williams, P.M.3    Lih, C.-J.4    Walsh, W.5    Jaffe, E.S.6
  • 37
    • 84887343608 scopus 로고    scopus 로고
    • Molecular classification of mature aggressive B-cell lymphoma using digital multiplexed gene expression on formalin-fixed paraffin-embedded biopsy specimens
    • Masque-Soler N, Szczepanowski M, Kohler CW, Spang R, Klapper W. Molecular classification of mature aggressive B-cell lymphoma using digital multiplexed gene expression on formalin-fixed paraffin-embedded biopsy specimens. Blood 2013;122:1985-6.
    • (2013) Blood , vol.122 , pp. 1985-1986
    • Masque-Soler, N.1    Szczepanowski, M.2    Kohler, C.W.3    Spang, R.4    Klapper, W.5
  • 38
    • 84884211534 scopus 로고    scopus 로고
    • Multiplexed gene expression and fusion transcript analysis to detect ALK fusions in lung cancer
    • Lira ME, Kim TM, Huang D, Deng S, Koh Y, Jang B, et al. Multiplexed gene expression and fusion transcript analysis to detect ALK fusions in lung cancer. J Mol Diagn 2013;15:51-61.
    • (2013) J Mol Diagn , vol.15 , pp. 51-61
    • Lira, M.E.1    Kim, T.M.2    Huang, D.3    Deng, S.4    Koh, Y.5    Jang, B.6
  • 39
    • 84892899428 scopus 로고    scopus 로고
    • Clinical characteristics associated with ALK rearrangements in never-smokers with pulmonary adenocarcinoma
    • Sun J-M, Lira M, Pandya K, Choi Y-L, Ahn JS, Mao M, et al. Clinical characteristics associated with ALK rearrangements in never-smokers with pulmonary adenocarcinoma. Lung Cancer 2014;83:259-64.
    • (2014) Lung Cancer , vol.83 , pp. 259-264
    • Sun, J.-M.1    Lira, M.2    Pandya, K.3    Choi, Y.-L.4    Ahn, J.S.5    Mao, M.6
  • 40
    • 3042594986 scopus 로고    scopus 로고
    • BCL2 translocation defines a unique tumor subsetwithin the germinal center B-cell-like diffuse large B-cell lymphoma
    • Iqbal J, Sanger WG, Horsman DE, Rosenwald A, Pickering DL, Dave B, et al. BCL2 translocation defines a unique tumor subsetwithin the germinal center B-cell-like diffuse large B-cell lymphoma. Am J Pathol 2004;165:159-66.
    • (2004) Am J Pathol , vol.165 , pp. 159-166
    • Iqbal, J.1    Sanger, W.G.2    Horsman, D.E.3    Rosenwald, A.4    Pickering, D.L.5    Dave, B.6


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