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Volumn 17, Issue 9, 2015, Pages 506-517

Optimization of the Magnetic Recovery of Hits from One-Bead-One-Compound Library Screens

Author keywords

antibody; magnetic recovery; one bead one compound library; peptides; peptoids; screening

Indexed keywords

DYES, REAGENTS, INDICATORS, MARKERS AND BUFFERS; IMMUNOGLOBULIN G; LIGAND; MICROSPHERE; MOLECULAR LIBRARY; MONOCLONAL ANTIBODY; PEPTIDE; PEPTIDE LIBRARY; PROTEIN;

EID: 84941564544     PISSN: 21568952     EISSN: None     Source Type: Journal    
DOI: 10.1021/acscombsci.5b00090     Document Type: Article
Times cited : (25)

References (35)
  • 1
    • 75149135954 scopus 로고    scopus 로고
    • Astle et al., Chem. Biol. 2010, 17, 38 - 45
    • (2010) Chem. Biol. , vol.17 , pp. 38-45
    • Astle1
  • 2
    • 0026419328 scopus 로고
    • A new type of synthetic peptide library for identifying ligand-binding activity
    • Lam, K. S.; Salmon, S. E.; Hersh, E. M.; Hruby, V. J.; Kazmierski, W. M.; Knapp, R. J. A new type of synthetic peptide library for identifying ligand-binding activity Nature 1991, 354, 82-84 10.1038/354082a0
    • (1991) Nature , vol.354 , pp. 82-84
    • Lam, K.S.1    Salmon, S.E.2    Hersh, E.M.3    Hruby, V.J.4    Kazmierski, W.M.5    Knapp, R.J.6
  • 3
    • 58949090838 scopus 로고    scopus 로고
    • Synthesis and screening of a cyclic peptide library: Discovery of small-molecule ligands against human prolactin receptor
    • Liu, T.; Joo, S. H.; Voorhees, J. L.; Brooks, C. L.; Pei, D. Synthesis and screening of a cyclic peptide library: discovery of small-molecule ligands against human prolactin receptor Bioorg. Med. Chem. 2009, 17 (3) 1026-33 10.1016/j.bmc.2008.01.015
    • (2009) Bioorg. Med. Chem. , vol.17 , Issue.3 , pp. 1026-1033
    • Liu, T.1    Joo, S.H.2    Voorhees, J.L.3    Brooks, C.L.4    Pei, D.5
  • 6
    • 84874874498 scopus 로고    scopus 로고
    • Synthesis of libraries of peptidomimetic compounds containing a 2-oxopiperazine unit in the main chain
    • Suwal, S.; Kodadek, T. Synthesis of libraries of peptidomimetic compounds containing a 2-oxopiperazine unit in the main chain Org. Biomol. Chem. 2013, 11, 2088-2092 10.1039/c3ob27476d
    • (2013) Org. Biomol. Chem. , vol.11 , pp. 2088-2092
    • Suwal, S.1    Kodadek, T.2
  • 7
    • 84904439157 scopus 로고    scopus 로고
    • Solid-phase synthesis of peptoid-like oligomers containing diverse diketopiperazine units
    • Suwal, S.; Kodadek, T. Solid-phase synthesis of peptoid-like oligomers containing diverse diketopiperazine units Org. Biomol. Chem. 2014, 12 (31) 5831-4 10.1039/C4OB00829D
    • (2014) Org. Biomol. Chem. , vol.12 , Issue.31 , pp. 5831-5834
    • Suwal, S.1    Kodadek, T.2
  • 8
    • 84856400291 scopus 로고    scopus 로고
    • A biomimetic polyketide-inspired approach to small molecule ligand discovery
    • Aquino, C.; Sarkar, M.; CHalmers, M. J.; Mendes, K.; Kodadek, T.; Micalizio, G. A biomimetic polyketide-inspired approach to small molecule ligand discovery Nat. Chem. 2011, 4, 99-104 10.1038/nchem.1200
    • (2011) Nat. Chem. , vol.4 , pp. 99-104
    • Aquino, C.1    Sarkar, M.2    CHalmers, M.J.3    Mendes, K.4    Kodadek, T.5    Micalizio, G.6
  • 9
    • 80052945383 scopus 로고    scopus 로고
    • Acylhydrazides as peptoid sub-monomers
    • Sarma, B. K.; Yousufuddin, M.; Kodadek, T. Acylhydrazides as peptoid sub-monomers Chem. Commun. 2011, 47, 10590-10592 10.1039/c1cc12750k
    • (2011) Chem. Commun. , vol.47 , pp. 10590-10592
    • Sarma, B.K.1    Yousufuddin, M.2    Kodadek, T.3
  • 10
    • 84870285814 scopus 로고    scopus 로고
    • Sub-monomer synthesis of a hybrid peptoid-azapeptoid library
    • Sarma, B. K.; Kodadek, T. Sub-monomer synthesis of a hybrid peptoid-azapeptoid library ACS Comb. Sci. 2012, 14, 558-564 10.1021/co3000852
    • (2012) ACS Comb. Sci. , vol.14 , pp. 558-564
    • Sarma, B.K.1    Kodadek, T.2
  • 11
    • 84875426614 scopus 로고    scopus 로고
    • Synthesis and screening of stereochemically diverse combinatorial libraries of peptide tertiary amides
    • Gao, Y.; Kodadek, T. Synthesis and screening of stereochemically diverse combinatorial libraries of peptide tertiary amides Chem. Biol. 2013, 20, 360-369 10.1016/j.chembiol.2013.01.013
    • (2013) Chem. Biol. , vol.20 , pp. 360-369
    • Gao, Y.1    Kodadek, T.2
  • 12
    • 56349106981 scopus 로고    scopus 로고
    • Encoded combinatorial libraries for the construction of cyclic peptoid microarrays
    • Kwon, Y. U.; Kodadek, T. Encoded combinatorial libraries for the construction of cyclic peptoid microarrays Chem. Commun. (Cambridge, U. K.) 2008, 44, 5704-6 10.1039/b812735b
    • (2008) Chem. Commun. (Cambridge, U. K.) , vol.44 , pp. 5704-5706
    • Kwon, Y.U.1    Kodadek, T.2
  • 13
    • 0037014692 scopus 로고    scopus 로고
    • A novel peptide-based encoding system for "one-bead one-compound" peptidomimetic and small molecule combinatorial libraries
    • Liu, R.; Marik, J.; Lam, K. S. A novel peptide-based encoding system for "one-bead one-compound" peptidomimetic and small molecule combinatorial libraries J. Am. Chem. Soc. 2002, 124, 7678-7680 10.1021/ja026421t
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 7678-7680
    • Liu, R.1    Marik, J.2    Lam, K.S.3
  • 14
    • 33749532845 scopus 로고    scopus 로고
    • High-throughput sequence determination of cyclic peptide library members by partial Edman degradation/mass spectrometry
    • Joo, S. H.; Xiao, Q.; Ling, Y.; Gopishetty, B.; Pei, D. High-throughput sequence determination of cyclic peptide library members by partial Edman degradation/mass spectrometry J. Am. Chem. Soc. 2006, 128, 13000-13009 10.1021/ja063722k
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 13000-13009
    • Joo, S.H.1    Xiao, Q.2    Ling, Y.3    Gopishetty, B.4    Pei, D.5
  • 15
    • 84875215124 scopus 로고    scopus 로고
    • A convenient approach to prepare topologically segregated bilayer beads for one-bead two-compound cobinatorial peptide libraries
    • Bedard, F.; Girard, A.; Biron, E. A convenient approach to prepare topologically segregated bilayer beads for one-bead two-compound cobinatorial peptide libraries Int. J. Pept. Res. Ther. 2013, 19, 13-23 10.1007/s10989-012-9316-x
    • (2013) Int. J. Pept. Res. Ther. , vol.19 , pp. 13-23
    • Bedard, F.1    Girard, A.2    Biron, E.3
  • 16
    • 33744458765 scopus 로고    scopus 로고
    • Cleavable hydrophilic linker for one-bead-one-compound sequencing of oligomer libraries by tandem mass spectrometry
    • Paulick, M. G.; Hart, K. M.; Brinner, K. M.; Tjandra, M.; Charych, D. H.; Zuckermann, R. N. Cleavable hydrophilic linker for one-bead-one-compound sequencing of oligomer libraries by tandem mass spectrometry J. Comb. Chem. 2006, 8 (3) 417-426 10.1021/cc0501460
    • (2006) J. Comb. Chem. , vol.8 , Issue.3 , pp. 417-426
    • Paulick, M.G.1    Hart, K.M.2    Brinner, K.M.3    Tjandra, M.4    Charych, D.H.5    Zuckermann, R.N.6
  • 17
    • 84879083199 scopus 로고    scopus 로고
    • Decoding split and pool combinatorial libraries with electron transfer dissociation tandem mass spectrometry
    • Sarkar, M.; Pascal, B. D.; Steckler, C.; Micalizio, G. C.; Kodadek, T.; Chalmers, M. J. Decoding split and pool combinatorial libraries with electron transfer dissociation tandem mass spectrometry J. Am. Soc. Mass Spectrom. 2013, 24, 1026-1036 10.1007/s13361-013-0633-x
    • (2013) J. Am. Soc. Mass Spectrom. , vol.24 , pp. 1026-1036
    • Sarkar, M.1    Pascal, B.D.2    Steckler, C.3    Micalizio, G.C.4    Kodadek, T.5    CHalmers, M.J.6
  • 18
    • 80052745646 scopus 로고    scopus 로고
    • High-throughput screening of one-bead-one-compound libraries: Identification of cyclic peptidyl inhibitors against calcineurin/NFAT interaction
    • Liu, T.; Qian, Z.; Xiao, Q.; Pei, D. High-throughput screening of one-bead-one-compound libraries: identification of cyclic peptidyl inhibitors against calcineurin/NFAT interaction ACS Comb. Sci. 2011, 13 (5) 537-46 10.1021/co200101w
    • (2011) ACS Comb. Sci. , vol.13 , Issue.5 , pp. 537-546
    • Liu, T.1    Qian, Z.2    Xiao, Q.3    Pei, D.4
  • 19
    • 0344443721 scopus 로고    scopus 로고
    • Quantum dots as a visual aid for screening bead-bound combinatorial libraries
    • Olivos, H. J.; Baccawat-Sikder, K.; Kodadek, T. Quantum dots as a visual aid for screening bead-bound combinatorial libraries ChemBioChem 2003, 4, 1242-1245 10.1002/cbic.200300712
    • (2003) ChemBioChem , vol.4 , pp. 1242-1245
    • Olivos, H.J.1    Baccawat-Sikder, K.2    Kodadek, T.3
  • 20
    • 84882282136 scopus 로고    scopus 로고
    • Screening Bicyclic Peptide Libraries for Protein-Protein Interaction Inhibitors: Discovery of a Tumor Necrosis Factor-alpha Antagonist
    • Lian, W.; Upadhyaya, P.; Rhodes, C. A.; Liu, Y.; Pei, D. Screening Bicyclic Peptide Libraries for Protein-Protein Interaction Inhibitors: Discovery of a Tumor Necrosis Factor-alpha Antagonist J. Am. Chem. Soc. 2013, 135 (32) 11990-5 10.1021/ja405106u
    • (2013) J. Am. Chem. Soc. , vol.135 , Issue.32 , pp. 11990-11995
    • Lian, W.1    Upadhyaya, P.2    Rhodes, C.A.3    Liu, Y.4    Pei, D.5
  • 21
    • 78649884200 scopus 로고    scopus 로고
    • Random glycopeptide bead libraries for seromic biomarker discovery
    • Kracun, S. K.; Clo, E.; Clausen, H.; Levery, S. B.; Jensen, K. J.; Blixt, O. Random glycopeptide bead libraries for seromic biomarker discovery J. Proteome Res. 2010, 9 (12) 6705-14 10.1021/pr1008477
    • (2010) J. Proteome Res. , vol.9 , Issue.12 , pp. 6705-6714
    • Kracun, S.K.1    Clo, E.2    Clausen, H.3    Levery, S.B.4    Jensen, K.J.5    Blixt, O.6
  • 22
    • 84881493231 scopus 로고    scopus 로고
    • High-Throughput Screening of One-Bead-One-Compound Peptide Libraries Using Intact Cells
    • Cho, C.-F.; Azad, B. B.; Luyt, L. G.; Lewis, J. D. High-Throughput Screening of One-Bead-One-Compound Peptide Libraries Using Intact Cells ACS Comb. Sci. 2013, 15, 393-400 10.1021/co4000584
    • (2013) ACS Comb. Sci. , vol.15 , pp. 393-400
    • Cho, C.-F.1    Azad, B.B.2    Luyt, L.G.3    Lewis, J.D.4
  • 23
    • 75149135954 scopus 로고    scopus 로고
    • Seamless bead to microarray screening: Rapid identification of the highest affinity protein ligands from large combinatorial libraries
    • Astle, J. M.; Simpson, L. S.; Huang, Y.; Reddy, M. M.; Wilson, R.; Connell, S.; Wilson, J.; Kodadek, T. Seamless bead to microarray screening: Rapid identification of the highest affinity protein ligands from large combinatorial libraries Chem. Biol. 2010, 17, 38-45 10.1016/j.chembiol.2009.12.015
    • (2010) Chem. Biol. , vol.17 , pp. 38-45
    • Astle, J.M.1    Simpson, L.S.2    Huang, Y.3    Reddy, M.M.4    Wilson, R.5    Connell, S.6    Wilson, J.7    Kodadek, T.8
  • 24
    • 84924346690 scopus 로고    scopus 로고
    • Direct comparison of linear and macrocyclic compound libraries as a source of protein ligands
    • Gao, Y.; Kodadek, T. Direct comparison of linear and macrocyclic compound libraries as a source of protein ligands ACS Comb. Sci. 2015, 17 (3) 190-5 10.1021/co500161c
    • (2015) ACS Comb. Sci. , vol.17 , Issue.3 , pp. 190-195
    • Gao, Y.1    Kodadek, T.2
  • 25
    • 84921027940 scopus 로고    scopus 로고
    • Rapid Lead Discovery Through Iterative Screening of One Bead One Compound Libraries
    • Gao, Y.; Amar, S.; Pahwa, S.; Fields, G.; Kodadek, T. Rapid Lead Discovery Through Iterative Screening of One Bead One Compound Libraries ACS Comb. Sci. 2015, 17, 49-59 10.1021/co500154e
    • (2015) ACS Comb. Sci. , vol.17 , pp. 49-59
    • Gao, Y.1    Amar, S.2    Pahwa, S.3    Fields, G.4    Kodadek, T.5
  • 26
    • 84902213551 scopus 로고    scopus 로고
    • The utility of redundant combinatorial libraries in distinguishing high and low quality screening hits
    • Doran, T. M.; Gao, Y.; Mendes, K.; Dean, S.; Simanski, S.; Kodadek, T. The utility of redundant combinatorial libraries in distinguishing high and low quality screening hits ACS Comb. Sci. 2014, 16, 259-270 10.1021/co500030f
    • (2014) ACS Comb. Sci. , vol.16 , pp. 259-270
    • Doran, T.M.1    Gao, Y.2    Mendes, K.3    Dean, S.4    Simanski, S.5    Kodadek, T.6
  • 27
    • 84909586866 scopus 로고    scopus 로고
    • Chemical tools to monitor and manipulate the adaptive immune system
    • Kodadek, T. Chemical tools to monitor and manipulate the adaptive immune system Chem. Biol. 2014, 21, 1066-1074 10.1016/j.chembiol.2014.07.009
    • (2014) Chem. Biol. , vol.21 , pp. 1066-1074
    • Kodadek, T.1
  • 28
    • 78650938957 scopus 로고    scopus 로고
    • Identification of candidate IgG biomarkers for Alzheimer's Disease via combinatorial library screening
    • Reddy, M. M.; Wilson, R.; Wilson, J.; Connell, S.; Gocke, A.; Hynan, L.; German, D.; Kodadek, T. Identification of candidate IgG biomarkers for Alzheimer's Disease via combinatorial library screening Cell 2011, 144, 132-142 10.1016/j.cell.2010.11.054
    • (2011) Cell , vol.144 , pp. 132-142
    • Reddy, M.M.1    Wilson, R.2    Wilson, J.3    Connell, S.4    Gocke, A.5    Hynan, L.6    German, D.7    Kodadek, T.8
  • 30
    • 84923377113 scopus 로고    scopus 로고
    • Discovery of native autoantigens via antigen surrogate technology: Application to Type i diabetes
    • Doran, T. M.; Simanski, S.; Kodadek, T. Discovery of native autoantigens via antigen surrogate technology: Application to Type I diabetes ACS Chem. Biol. 2015, 10, 401-412 10.1021/cb5007618
    • (2015) ACS Chem. Biol. , vol.10 , pp. 401-412
    • Doran, T.M.1    Simanski, S.2    Kodadek, T.3
  • 31
    • 67749119955 scopus 로고    scopus 로고
    • Single bead labeling method for combining confocal fluorescence on-bead screening and solution validation of tagged one-bead one-compound libraries
    • Hintersteiner, M.; Kimmerlin, T.; Kalthoff, F.; Stoeckli, M.; Garavel, G.; Seifert, J. M.; Meisner, N. C.; Uhl, V.; Buehler, C.; Weidemann, T.; Auer, M. Single bead labeling method for combining confocal fluorescence on-bead screening and solution validation of tagged one-bead one-compound libraries Chem. Biol. 2009, 16 (7) 724-35 10.1016/j.chembiol.2009.06.011
    • (2009) Chem. Biol. , vol.16 , Issue.7 , pp. 724-735
    • Hintersteiner, M.1    Kimmerlin, T.2    Kalthoff, F.3    Stoeckli, M.4    Garavel, G.5    Seifert, J.M.6    Meisner, N.C.7    Uhl, V.8    Buehler, C.9    Weidemann, T.10    Auer, M.11
  • 32
    • 33748486747 scopus 로고    scopus 로고
    • Structure of anti-FLAG M2 Fab domain and its use in the stabilization of engineered membrane proteins
    • Roosild, T. P.; Castronovo, S.; Choe, S. Structure of anti-FLAG M2 Fab domain and its use in the stabilization of engineered membrane proteins Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 2006, 62 (9) 835-839 10.1107/S1744309106029125
    • (2006) Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. , vol.62 , Issue.9 , pp. 835-839
    • Roosild, T.P.1    Castronovo, S.2    Choe, S.3
  • 33
    • 84896711798 scopus 로고    scopus 로고
    • A Liquid Array Platform for the Multiplexed Analysis of Synthetic Molecule-Protein Interactions
    • Doran, T. M.; Kodadek, T. A Liquid Array Platform for the Multiplexed Analysis of Synthetic Molecule-Protein Interactions ACS Chem. Biol. 2014, 9, 339-346 10.1021/cb400806r
    • (2014) ACS Chem. Biol. , vol.9 , pp. 339-346
    • Doran, T.M.1    Kodadek, T.2
  • 34
    • 84859267263 scopus 로고    scopus 로고
    • A Cleavable Scaffold Strategy for the Synthesis of One-Bead One-Compound Cyclic Peptoid Libraries That Can Be Sequenced by Tandem Mass Spectrometry
    • Simpson, L. S.; Kodadek, T. A Cleavable Scaffold Strategy for the Synthesis of One-Bead One-Compound Cyclic Peptoid Libraries That Can Be Sequenced By Tandem Mass Spectrometry Tetrahedron Lett. 2012, 53 (18) 2341-2344 10.1016/j.tetlet.2012.02.112
    • (2012) Tetrahedron Lett. , vol.53 , Issue.18 , pp. 2341-2344
    • Simpson, L.S.1    Kodadek, T.2
  • 35
    • 0000908874 scopus 로고
    • Efficient method for the preparation of peptoids (oligo(N-substituted glycines)) by sub-monomer solid-phase synthesis
    • Zuckermann, R. N.; Kerr, J. M.; Kent, S. B. H.; Moos, W. H. Efficient method for the preparation of peptoids (oligo(N-substituted glycines)) by sub-monomer solid-phase synthesis J. Am. Chem. Soc. 1992, 114, 10646-10647 10.1021/ja00052a076
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 10646-10647
    • Zuckermann, R.N.1    Kerr, J.M.2    Kent, S.B.H.3    Moos, W.H.4


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