-
1
-
-
84867148740
-
Poly(ADP-ribosyl)ation acts in the DNA demethylation of mouse primordial germ cells also with DNA damage-independent roles
-
F. Ciccarone, F.G. Klinger, A. Catizone, R. Calabrese, M. Zampieri, M.G. Bacalini, M. De Felici, and P. Caiafa Poly(ADP-ribosyl)ation acts in the DNA demethylation of mouse primordial germ cells also with DNA damage-independent roles PLoS ONE 7 2012 e46927
-
(2012)
PLoS ONE
, vol.7
, pp. e46927
-
-
Ciccarone, F.1
Klinger, F.G.2
Catizone, A.3
Calabrese, R.4
Zampieri, M.5
Bacalini, M.G.6
De Felici, M.7
Caiafa, P.8
-
2
-
-
59849095153
-
A self-renewal program controls the expansion of genetically unstable cancer stem cells in pluripotent stem cell-derived tumors
-
A.E. Conway, A. Lindgren, Z. Galic, A.D. Pyle, H. Wu, J.A. Zack, M. Pelligrini, M.A. Teitell, and A.T. Clark A self-renewal program controls the expansion of genetically unstable cancer stem cells in pluripotent stem cell-derived tumors Stem Cells 27 2009 18 28
-
(2009)
Stem Cells
, vol.27
, pp. 18-28
-
-
Conway, A.E.1
Lindgren, A.2
Galic, Z.3
Pyle, A.D.4
Wu, H.5
Zack, J.A.6
Pelligrini, M.7
Teitell, M.A.8
Clark, A.T.9
-
3
-
-
24144442798
-
Growth factors sustain primordial germ cell survival, proliferation and entering into meiosis in the absence of somatic cells
-
D. Farini, M.L. Scaldaferri, S. Iona, G. La Sala, and M. De Felici Growth factors sustain primordial germ cell survival, proliferation and entering into meiosis in the absence of somatic cells Dev. Biol. 285 2005 49 56
-
(2005)
Dev. Biol.
, vol.285
, pp. 49-56
-
-
Farini, D.1
Scaldaferri, M.L.2
Iona, S.3
La Sala, G.4
De Felici, M.5
-
4
-
-
84859519339
-
Global profiling of DNA methylation erasure in mouse primordial germ cells
-
S. Guibert, T. Forné, and M. Weber Global profiling of DNA methylation erasure in mouse primordial germ cells Genome Res. 22 2012 633 641
-
(2012)
Genome Res.
, vol.22
, pp. 633-641
-
-
Guibert, S.1
Forné, T.2
Weber, M.3
-
5
-
-
84872770694
-
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
-
J.A. Hackett, R. Sengupta, J.J. Zylicz, K. Murakami, C. Lee, T.A. Down, and M.A. Surani Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine Science 339 2013 448 452
-
(2013)
Science
, vol.339
, pp. 448-452
-
-
Hackett, J.A.1
Sengupta, R.2
Zylicz, J.J.3
Murakami, K.4
Lee, C.5
Down, T.A.6
Surani, M.A.7
-
6
-
-
0036768615
-
Epigenetic reprogramming in mouse primordial germ cells
-
P. Hajkova, S. Erhardt, N. Lane, T. Haaf, O. El-Maarri, W. Reik, J. Walter, and M.A. Surani Epigenetic reprogramming in mouse primordial germ cells Mech. Dev. 117 2002 15 23
-
(2002)
Mech. Dev.
, vol.117
, pp. 15-23
-
-
Hajkova, P.1
Erhardt, S.2
Lane, N.3
Haaf, T.4
El-Maarri, O.5
Reik, W.6
Walter, J.7
Surani, M.A.8
-
7
-
-
84931476499
-
The aorta-gonad-mesonephros organ culture recapitulates 5hmC reorganization and replication-dependent and independent loss of DNA methylation in the germline
-
J. Hargan-Calvopina, H. Cook, J.J. Vincent, K. Nee, and A.T. Clark The aorta-gonad-mesonephros organ culture recapitulates 5hmC reorganization and replication-dependent and independent loss of DNA methylation in the germline Stem Cells Dev. 24 2015 1536 1545
-
(2015)
Stem Cells Dev.
, vol.24
, pp. 1536-1545
-
-
Hargan-Calvopina, J.1
Cook, H.2
Vincent, J.J.3
Nee, K.4
Clark, A.T.5
-
8
-
-
80052022935
-
Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells
-
K. Hayashi, H. Ohta, K. Kurimoto, S. Aramaki, and M. Saitou Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells Cell 146 2011 519 532
-
(2011)
Cell
, vol.146
, pp. 519-532
-
-
Hayashi, K.1
Ohta, H.2
Kurimoto, K.3
Aramaki, S.4
Saitou, M.5
-
9
-
-
84869139022
-
Offspring from oocytes derived from in vitro primordial germ cell-like cells in mice
-
K. Hayashi, S. Ogushi, K. Kurimoto, S. Shimamoto, H. Ohta, and M. Saitou Offspring from oocytes derived from in vitro primordial germ cell-like cells in mice Science 338 2012 971 975
-
(2012)
Science
, vol.338
, pp. 971-975
-
-
Hayashi, K.1
Ogushi, S.2
Kurimoto, K.3
Shimamoto, S.4
Ohta, H.5
Saitou, M.6
-
10
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
W. Huang da, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 2009 44 57
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
11
-
-
84873570094
-
Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice
-
S. Kagiwada, K. Kurimoto, T. Hirota, M. Yamaji, and M. Saitou Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice EMBO J. 32 2013 340 353
-
(2013)
EMBO J.
, vol.32
, pp. 340-353
-
-
Kagiwada, S.1
Kurimoto, K.2
Hirota, T.3
Yamaji, M.4
Saitou, M.5
-
12
-
-
84892606041
-
Active DNA demethylation is required for complete imprint erasure in primordial germ cells
-
Y. Kawasaki, J. Lee, A. Matsuzawa, T. Kohda, T. Kaneko-Ishino, and F. Ishino Active DNA demethylation is required for complete imprint erasure in primordial germ cells Sci. Rep. 4 2014 3658
-
(2014)
Sci. Rep.
, vol.4
, pp. 3658
-
-
Kawasaki, Y.1
Lee, J.2
Matsuzawa, A.3
Kohda, T.4
Kaneko-Ishino, T.5
Ishino, F.6
-
13
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
D. Kim, G. Pertea, C. Trapnell, H. Pimentel, R. Kelley, and S.L. Salzberg TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Genome Biol. 14 2013 R36
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
14
-
-
0027942245
-
Mouse embryonic germ (EG) cell lines: Transmission through the germline and differences in the methylation imprint of insulin-like growth factor 2 receptor (Igf2r) gene compared with embryonic stem (ES) cell lines
-
P.A. Labosky, D.P. Barlow, and B.L. Hogan Mouse embryonic germ (EG) cell lines: Transmission through the germline and differences in the methylation imprint of insulin-like growth factor 2 receptor (Igf2r) gene compared with embryonic stem (ES) cell lines Development 120 1994 3197 3204
-
(1994)
Development
, vol.120
, pp. 3197-3204
-
-
Labosky, P.A.1
Barlow, D.P.2
Hogan, B.L.3
-
15
-
-
84875201183
-
Naive pluripotency is associated with global DNA hypomethylation
-
H.G. Leitch, K.R. McEwen, A. Turp, V. Encheva, T. Carroll, N. Grabole, W. Mansfield, B. Nashun, J.G. Knezovich, A. Smith, and et al. Naive pluripotency is associated with global DNA hypomethylation Nat. Struct. Mol. Biol. 20 2013 311 316
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 311-316
-
-
Leitch, H.G.1
McEwen, K.R.2
Turp, A.3
Encheva, V.4
Carroll, T.5
Grabole, N.6
Mansfield, W.7
Nashun, B.8
Knezovich, J.G.9
Smith, A.10
-
16
-
-
84878280324
-
Rebuilding pluripotency from primordial germ cells
-
H.G. Leitch, J. Nichols, P. Humphreys, C. Mulas, G. Martello, C. Lee, K. Jones, M.A. Surani, and A. Smith Rebuilding pluripotency from primordial germ cells Stem Cell Reports 1 2013 66 78
-
(2013)
Stem Cell Reports
, vol.1
, pp. 66-78
-
-
Leitch, H.G.1
Nichols, J.2
Humphreys, P.3
Mulas, C.4
Martello, G.5
Lee, C.6
Jones, K.7
Surani, M.A.8
Smith, A.9
-
17
-
-
84876325712
-
Primordial germ-cell development and epigenetic reprogramming in mammals
-
H.G. Leitch, W.W. Tang, and M.A. Surani Primordial germ-cell development and epigenetic reprogramming in mammals Curr. Top. Dev. Biol. 104 2013 149 187
-
(2013)
Curr. Top. Dev. Biol.
, vol.104
, pp. 149-187
-
-
Leitch, H.G.1
Tang, W.W.2
Surani, M.A.3
-
18
-
-
34848874100
-
Oct4 expression is not required for mouse somatic stem cell self-renewal
-
C.J. Lengner, F.D. Camargo, K. Hochedlinger, G.G. Welstead, S. Zaidi, S. Gokhale, H.R. Scholer, A. Tomilin, and R. Jaenisch Oct4 expression is not required for mouse somatic stem cell self-renewal Cell Stem Cell 1 2007 403 415
-
(2007)
Cell Stem Cell
, vol.1
, pp. 403-415
-
-
Lengner, C.J.1
Camargo, F.D.2
Hochedlinger, K.3
Welstead, G.G.4
Zaidi, S.5
Gokhale, S.6
Scholer, H.R.7
Tomilin, A.8
Jaenisch, R.9
-
19
-
-
79551552689
-
Loss of Pten causes tumor initiation following differentiation of murine pluripotent stem cells due to failed repression of Nanog
-
A.G. Lindgren, K. Natsuhara, E. Tian, J.J. Vincent, X. Li, J. Jiao, H. Wu, U. Banerjee, and A.T. Clark Loss of Pten causes tumor initiation following differentiation of murine pluripotent stem cells due to failed repression of Nanog PLoS ONE 6 2011 e16478
-
(2011)
PLoS ONE
, vol.6
, pp. e16478
-
-
Lindgren, A.G.1
Natsuhara, K.2
Tian, E.3
Vincent, J.J.4
Li, X.5
Jiao, J.6
Wu, H.7
Banerjee, U.8
Clark, A.T.9
-
20
-
-
0036205914
-
Methylation dynamics of imprinted genes in mouse germ cells
-
D. Lucifero, C. Mertineit, H.J. Clarke, T.H. Bestor, and J.M. Trasler Methylation dynamics of imprinted genes in mouse germ cells Genomics 79 2002 530 538
-
(2002)
Genomics
, vol.79
, pp. 530-538
-
-
Lucifero, D.1
Mertineit, C.2
Clarke, H.J.3
Bestor, T.H.4
Trasler, J.M.5
-
21
-
-
0026699762
-
Derivation of pluripotential embryonic stem cells from murine primordial germ cells in culture
-
Y. Matsui, K. Zsebo, and B.L. Hogan Derivation of pluripotential embryonic stem cells from murine primordial germ cells in culture Cell 70 1992 841 847
-
(1992)
Cell
, vol.70
, pp. 841-847
-
-
Matsui, Y.1
Zsebo, K.2
Hogan, B.L.3
-
22
-
-
0035573650
-
Germ cells and pluripotent stem cells in the mouse
-
A. McLaren, and G. Durcova-Hills Germ cells and pluripotent stem cells in the mouse Reprod. Fertil. Dev. 13 2001 661 664
-
(2001)
Reprod. Fertil. Dev.
, vol.13
, pp. 661-664
-
-
McLaren, A.1
Durcova-Hills, G.2
-
23
-
-
33847621750
-
Methylation status of imprinting centers for H19/IGF2 and SNURF/SNRPN in primate embryonic stem cells
-
S. Mitalipov, L. Clepper, H. Sritanaudomchai, A. Fujimoto, and D. Wolf Methylation status of imprinting centers for H19/IGF2 and SNURF/SNRPN in primate embryonic stem cells Stem Cells 25 2007 581 588
-
(2007)
Stem Cells
, vol.25
, pp. 581-588
-
-
Mitalipov, S.1
Clepper, L.2
Sritanaudomchai, H.3
Fujimoto, A.4
Wolf, D.5
-
24
-
-
65649126708
-
Derivation of primordial germ cells from human embryonic and induced pluripotent stem cells is significantly improved by coculture with human fetal gonadal cells
-
T.S. Park, Z. Galic, A.E. Conway, A. Lindgren, B.J. van Handel, M. Magnusson, L. Richter, M.A. Teitell, H.K. Mikkola, W.E. Lowry, and et al. Derivation of primordial germ cells from human embryonic and induced pluripotent stem cells is significantly improved by coculture with human fetal gonadal cells Stem Cells 27 2009 783 795
-
(2009)
Stem Cells
, vol.27
, pp. 783-795
-
-
Park, T.S.1
Galic, Z.2
Conway, A.E.3
Lindgren, A.4
Van Handel, B.J.5
Magnusson, M.6
Richter, L.7
Teitell, M.A.8
Mikkola, H.K.9
Lowry, W.E.10
-
25
-
-
77249148019
-
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
-
C. Popp, W. Dean, S. Feng, S.J. Cokus, S. Andrews, M. Pellegrini, S.E. Jacobsen, and W. Reik Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency Nature 463 2010 1101 1105
-
(2010)
Nature
, vol.463
, pp. 1101-1105
-
-
Popp, C.1
Dean, W.2
Feng, S.3
Cokus, S.J.4
Andrews, S.5
Pellegrini, M.6
Jacobsen, S.E.7
Reik, W.8
-
26
-
-
0026669014
-
Long-term proliferation of mouse primordial germ cells in culture
-
J.L. Resnick, L.S. Bixler, L. Cheng, and P.J. Donovan Long-term proliferation of mouse primordial germ cells in culture Nature 359 1992 550 551
-
(1992)
Nature
, vol.359
, pp. 550-551
-
-
Resnick, J.L.1
Bixler, L.S.2
Cheng, L.3
Donovan, P.J.4
-
27
-
-
84871702441
-
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
-
S. Seisenberger, S. Andrews, F. Krueger, J. Arand, J. Walter, F. Santos, C. Popp, B. Thienpont, W. Dean, and W. Reik The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells Mol. Cell 48 2012 849 862
-
(2012)
Mol. Cell
, vol.48
, pp. 849-862
-
-
Seisenberger, S.1
Andrews, S.2
Krueger, F.3
Arand, J.4
Walter, J.5
Santos, F.6
Popp, C.7
Thienpont, B.8
Dean, W.9
Reik, W.10
-
28
-
-
36849072573
-
The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
-
J. Sharif, M. Muto, S. Takebayashi, I. Suetake, A. Iwamatsu, T.A. Endo, J. Shinga, Y. Mizutani-Koseki, T. Toyoda, K. Okamura, and et al. The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA Nature 450 2007 908 912
-
(2007)
Nature
, vol.450
, pp. 908-912
-
-
Sharif, J.1
Muto, M.2
Takebayashi, S.3
Suetake, I.4
Iwamatsu, A.5
Endo, T.A.6
Shinga, J.7
Mizutani-Koseki, Y.8
Toyoda, T.9
Okamura, K.10
-
29
-
-
34347238237
-
Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains
-
L.V. Sharova, A.A. Sharov, Y. Piao, N. Shaik, T. Sullivan, C.L. Stewart, B.L. Hogan, and M.S. Ko Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains Dev. Biol. 307 2007 446 459
-
(2007)
Dev. Biol.
, vol.307
, pp. 446-459
-
-
Sharova, L.V.1
Sharov, A.A.2
Piao, Y.3
Shaik, N.4
Sullivan, T.5
Stewart, C.L.6
Hogan, B.L.7
Ko, M.S.8
-
30
-
-
51049107311
-
Derivation of embryonic germ cells from post migratory primordial germ cells, and methylation analysis of their imprinted genes by bisulfite genomic sequencing
-
S.W. Shim, D.W. Han, J.H. Yang, B.Y. Lee, S.B. Kim, H. Shim, and H.T. Lee Derivation of embryonic germ cells from post migratory primordial germ cells, and methylation analysis of their imprinted genes by bisulfite genomic sequencing Mol. Cells 25 2008 358 367
-
(2008)
Mol. Cells
, vol.25
, pp. 358-367
-
-
Shim, S.W.1
Han, D.W.2
Yang, J.H.3
Lee, B.Y.4
Kim, S.B.5
Shim, H.6
Lee, H.T.7
-
31
-
-
37849034115
-
Heterogeneity in imprinted methylation patterns of pluripotent embryonic germ cells derived from pre-migratory mouse germ cells
-
T.C. Shovlin, G. Durcova-Hills, A. Surani, and A. McLaren Heterogeneity in imprinted methylation patterns of pluripotent embryonic germ cells derived from pre-migratory mouse germ cells Dev. Biol. 313 2008 674 681
-
(2008)
Dev. Biol.
, vol.313
, pp. 674-681
-
-
Shovlin, T.C.1
Durcova-Hills, G.2
Surani, A.3
McLaren, A.4
-
32
-
-
0028198189
-
Stem cells from primordial germ cells can reenter the germ line
-
C.L. Stewart, I. Gadi, and H. Bhatt Stem cells from primordial germ cells can reenter the germ line Dev. Biol. 161 1994 626 628
-
(1994)
Dev. Biol.
, vol.161
, pp. 626-628
-
-
Stewart, C.L.1
Gadi, I.2
Bhatt, H.3
-
33
-
-
0031893360
-
Epigenotype switching of imprintable loci in embryonic germ cells
-
T. Tada, M. Tada, K. Hilton, S.C. Barton, T. Sado, N. Takagi, and M.A. Surani Epigenotype switching of imprintable loci in embryonic germ cells Dev. Genes Evol. 207 1998 551 561
-
(1998)
Dev. Genes Evol.
, vol.207
, pp. 551-561
-
-
Tada, T.1
Tada, M.2
Hilton, K.3
Barton, S.C.4
Sado, T.5
Takagi, N.6
Surani, M.A.7
-
34
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
K. Takahashi, and S. Yamanaka Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors Cell 126 2006 663 676
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
35
-
-
0034191987
-
Expression and intracellular localization of mouse Vasa-homologue protein during germ cell development
-
Y. Toyooka, N. Tsunekawa, Y. Takahashi, Y. Matsui, M. Satoh, and T. Noce Expression and intracellular localization of mouse Vasa-homologue protein during germ cell development Mech. Dev. 93 2000 139 149
-
(2000)
Mech. Dev.
, vol.93
, pp. 139-149
-
-
Toyooka, Y.1
Tsunekawa, N.2
Takahashi, Y.3
Matsui, Y.4
Satoh, M.5
Noce, T.6
-
36
-
-
83455213279
-
Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells
-
J.J. Vincent, Z. Li, S.A. Lee, X. Liu, M.O. Etter, S.V. Diaz-Perez, S.K. Taylor, S. Gkountela, A.G. Lindgren, and A.T. Clark Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells PLoS ONE 6 2011 e28960
-
(2011)
PLoS ONE
, vol.6
, pp. e28960
-
-
Vincent, J.J.1
Li, Z.2
Lee, S.A.3
Liu, X.4
Etter, M.O.5
Diaz-Perez, S.V.6
Taylor, S.K.7
Gkountela, S.8
Lindgren, A.G.9
Clark, A.T.10
-
37
-
-
84875949201
-
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells
-
J.J. Vincent, Y. Huang, P.Y. Chen, S. Feng, J.H. Calvopiña, K. Nee, S.A. Lee, T. Le, A.J. Yoon, K. Faull, and et al. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells Cell Stem Cell 12 2013 470 478
-
(2013)
Cell Stem Cell
, vol.12
, pp. 470-478
-
-
Vincent, J.J.1
Huang, Y.2
Chen, P.Y.3
Feng, S.4
Calvopiña, J.H.5
Nee, K.6
Lee, S.A.7
Le, T.8
Yoon, A.J.9
Faull, K.10
-
38
-
-
84871438065
-
Tet1 controls meiosis by regulating meiotic gene expression
-
S. Yamaguchi, K. Hong, R. Liu, L. Shen, A. Inoue, D. Diep, K. Zhang, and Y. Zhang Tet1 controls meiosis by regulating meiotic gene expression Nature 492 2012 443 447
-
(2012)
Nature
, vol.492
, pp. 443-447
-
-
Yamaguchi, S.1
Hong, K.2
Liu, R.3
Shen, L.4
Inoue, A.5
Diep, D.6
Zhang, K.7
Zhang, Y.8
-
39
-
-
84890568163
-
Role of Tet1 in erasure of genomic imprinting
-
S. Yamaguchi, L. Shen, Y. Liu, D. Sendler, and Y. Zhang Role of Tet1 in erasure of genomic imprinting Nature 504 2013 460 464
-
(2013)
Nature
, vol.504
, pp. 460-464
-
-
Yamaguchi, S.1
Shen, L.2
Liu, Y.3
Sendler, D.4
Zhang, Y.5
-
40
-
-
44349170450
-
The ground state of embryonic stem cell self-renewal
-
Q.L. Ying, J. Wray, J. Nichols, L. Batlle-Morera, B. Doble, J. Woodgett, P. Cohen, and A. Smith The ground state of embryonic stem cell self-renewal Nature 453 2008 519 523
-
(2008)
Nature
, vol.453
, pp. 519-523
-
-
Ying, Q.L.1
Wray, J.2
Nichols, J.3
Batlle-Morera, L.4
Doble, B.5
Woodgett, J.6
Cohen, P.7
Smith, A.8
|