-
1
-
-
77949917076
-
Evolution and phyletic distribution of two-component signal transduction systems
-
Wuichet, K., Cantwell, B. J. and Zhulin, I. B. (2010) Evolution and phyletic distribution of two-component signal transduction systems. Curr. Opin. Microbiol., 13, 219-225.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 219-225
-
-
Wuichet, K.1
Cantwell, B.J.2
Zhulin, I.B.3
-
2
-
-
84876971573
-
Two-component regulatory systems in prokaryotes
-
Filloux, A ed, Horizon Press, Caister
-
Whitworth, D. E. (2012) Two-component regulatory systems in prokaryotes. In: Filloux, A (ed). Bacterial Regulatory Networks. Horizon Press, Caister, pp. 191-222.
-
(2012)
Bacterial Regulatory Networks
, pp. 191-222
-
-
Whitworth, D.E.1
-
3
-
-
78650298750
-
The genetic organisation of prokaryotic two-component system signalling pathways
-
Williams, R. H. and Whitworth, D. E. (2010) The genetic organisation of prokaryotic two-component system signalling pathways. BMC Genomics, 11, 720.
-
(2010)
BMC Genomics
, vol.11
, pp. 720
-
-
Williams, R.H.1
Whitworth, D.E.2
-
4
-
-
77949911836
-
Diversity of structure and function of response regulator output domains
-
Galperin, M. Y. (2010) Diversity of structure and function of response regulator output domains. Curr. Opin. Microbiol., 13, 150-159.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 150-159
-
-
Galperin, M.Y.1
-
5
-
-
84945429158
-
Classification and organization of two-component systems
-
Gross, R and Beier, D eds, Horizon Scientific Press, Norfolk
-
Whitworth, D. E. (2012) Classification and organization of two-component systems. In: Gross, R and Beier, D (eds). Two-Component Systems. Horizon Scientific Press, Norfolk, pp. 1-20.
-
(2012)
Two-component Systems
, pp. 1-20
-
-
Whitworth, D.E.1
-
6
-
-
77949918665
-
Sensor domains of two-component regulatory systems
-
Cheung, J. and Hendrickson, W. A. (2010) Sensor domains of two-component regulatory systems. Curr. Opin. Microbiol., 13, 116-123.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 116-123
-
-
Cheung, J.1
Hendrickson, W.A.2
-
7
-
-
77957933198
-
Bacterial sensor kinases: Diversity in the recognition of environmental signals
-
Krell, T., Lacal, J., Busch, A., Silva-Jiménez, H., Guazzaroni, M.-E., and Ramos, J. L. (2010) Bacterial sensor kinases: diversity in the recognition of environmental signals. Ann. Rev. Microbiol., 64, 539-559.
-
(2010)
Ann. Rev. Microbiol.
, vol.64
, pp. 539-559
-
-
Krell, T.1
Lacal, J.2
Busch, A.3
Silva-Jiménez, H.4
Guazzaroni, M.-E.5
Ramos, J.L.6
-
8
-
-
77949910504
-
Orphan and hybrid two-component system proteins in health and disease
-
Raghavan, V. and Groisman, E. A. (2010) Orphan and hybrid two-component system proteins in health and disease. Curr. Opin. Microbiol., 13, 226-231.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 226-231
-
-
Raghavan, V.1
Groisman, E.A.2
-
9
-
-
68049092764
-
P2CS: A two-component system resource for prokaryotic signal transduction research
-
Barakat, M., Ortet, P., Jourlin-Castelli, C., Ansaldi, M., Mejean, V. and Whitworth, D. E. (2009) P2CS: a two-component system resource for prokaryotic signal transduction research. BMC Genomics, 10, 315.
-
(2009)
BMC Genomics
, vol.10
, pp. 315
-
-
Barakat, M.1
Ortet, P.2
Jourlin-Castelli, C.3
Ansaldi, M.4
Mejean, V.5
Whitworth, D.E.6
-
10
-
-
78651282059
-
P2CS: A database of prokaryotic two-component systems
-
Barakat, M., Ortet, P. and Whitworth, D. E. (2011) P2CS: a database of prokaryotic two-component systems. Nucleic Acids Res., 39, D771-D776.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D771-D776
-
-
Barakat, M.1
Ortet, P.2
Whitworth, D.E.3
-
11
-
-
84868688521
-
P2TF: A comprehensive resource for analysis of prokaryotic transcription factors
-
Ortet, P., De Luca, G., Whitworth, D. E. and Barakat, M. (2012) P2TF: a comprehensive resource for analysis of prokaryotic transcription factors. BMC Genomics, 13, 628.
-
(2012)
BMC Genomics
, vol.13
, pp. 628
-
-
Ortet, P.1
De Luca, G.2
Whitworth, D.E.3
Barakat, M.4
-
12
-
-
84876978729
-
P2RP: A web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes
-
Barakat, M., Ortet, P. and Whitworth, D. E. (2013) P2RP: a web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes. BMC Genomics, 14, 269.
-
(2013)
BMC Genomics
, vol.14
, pp. 269
-
-
Barakat, M.1
Ortet, P.2
Whitworth, D.E.3
-
13
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1991) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1991)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
14
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
65449188232
-
Jalview Version 2-A multiple sequence alignment editor and analysis workbench
-
Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M. and Barton, G. J. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
16
-
-
25444511538
-
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities
-
Bastien, O., Ortet, P., Roy, S. and Marechal, E. (2005) A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities. BMC Bioinformatics, 6, 49.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 49
-
-
Bastien, O.1
Ortet, P.2
Roy, S.3
Marechal, E.4
-
17
-
-
77957931761
-
Jsphylosvg: A javascript library for visualizing interactive and vector-based phylogenetic trees on the web
-
Smits, S. A. and Ouverney, C. C. (2010) jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. PLoS One, 5, e12267.
-
(2010)
PLoS One
, vol.5
, pp. e12267
-
-
Smits, S.A.1
Ouverney, C.C.2
-
18
-
-
33749597441
-
Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis
-
De Been, M., Francke, C., Moezelaar, R., Abee, T. and Siezen, R. J. (2006) Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis. Microbiology, 152, 3035-3048.
-
(2006)
Microbiology
, vol.152
, pp. 3035-3048
-
-
De Been, M.1
Francke, C.2
Moezelaar, R.3
Abee, T.4
Siezen, R.J.5
-
19
-
-
84874724662
-
Update on activities at the Universal Protein Resource (UniProt) in 2013
-
The Uniprot Consortium (2013) Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res., 41, D43-D47.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D43-D47
-
-
The Uniprot Consortium1
-
20
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
Franceschini, A., Szklarczyk, D., Frankild, S., Kuhn, M., Simonovic, M., Roth, A., Lin, J., Minguez, P., Bork, P., Von Mering, C. et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res., 41, D808-D815.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
Von Mering, C.10
-
21
-
-
84891782659
-
Pfam: The protein families database
-
Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J. et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
-
22
-
-
84871016428
-
Evolution of two-component signal transduction systems
-
Capra, E. J. and Laub, M. T. (2012) Evolution of two-component signal transduction systems. Ann. Rev. Microbiol., 66, 325-347.
-
(2012)
Ann. Rev. Microbiol.
, vol.66
, pp. 325-347
-
-
Capra, E.J.1
Laub, M.T.2
-
23
-
-
69249240168
-
Evolution of prokaryotic two-component systems: Insights from comparative genomics
-
Whitworth, D. E. and Cock, P. J. (2009) Evolution of prokaryotic two-component systems: insights from comparative genomics. Amino Acids, 37, 459-466.
-
(2009)
Amino Acids
, vol.37
, pp. 459-466
-
-
Whitworth, D.E.1
Cock, P.J.2
-
24
-
-
84874891810
-
CovR and VicRK regulate cell surface biogenesis genes required for biofilm formation in Streptococcus mutans
-
Stipp, R. N., Boisvert, H., Smith, D. J., Hofling, J. F., Duncan, M. J. and Mattos-Graner, R. O. (2013) CovR and VicRK regulate cell surface biogenesis genes required for biofilm formation in Streptococcus mutans. PLoS One, 8, e58271.
-
(2013)
PLoS One
, vol.8
, pp. e58271
-
-
Stipp, R.N.1
Boisvert, H.2
Smith, D.J.3
Hofling, J.F.4
Duncan, M.J.5
Mattos-Graner, R.O.6
-
25
-
-
39149114704
-
Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
-
Burger, L. and Van Nimwegen, E. (2008) Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method. Mol. Syst. Biol., 4, 165.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 165
-
-
Burger, L.1
Van Nimwegen, E.2
-
26
-
-
84893476565
-
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information
-
Cheng, R. R., Morcos, F., Levine, H. and Onuchic, J. N. (2014) Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information. Proc. Natl. Acad. Sci. U. S. A., 111, E563-E571.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. E563-E571
-
-
Cheng, R.R.1
Morcos, F.2
Levine, H.3
Onuchic, J.N.4
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