-
1
-
-
79960925372
-
Modernizing reference genome assemblies
-
Church, D.M., Schneider, V.A., Graves, T., Auger, K., Cunningham, F., Bouk, N., Chen, H.C., Agarwala, R., McLaren, W.M., Ritchie, G.R. et al. (2011) Modernizing reference genome assemblies. PLoS Biol., 9, e1001091.
-
(2011)
PLoS Biol.
, vol.9
-
-
Church, D.M.1
Schneider, V.A.2
Graves, T.3
Auger, K.4
Cunningham, F.5
Bouk, N.6
Chen, H.C.7
Agarwala, R.8
McLaren, W.M.9
Ritchie, G.R.10
-
2
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
Pruitt, K.D., Tatusova, T., Brown, G.R. and Maglott, D.R. (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res., 40, D130-D135.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
3
-
-
84875391572
-
Ensembl 2013
-
Flicek, P., Ahmed, I., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S. et al. (2013) Ensembl 2013. Nucleic Acids Res., 41, D48-D55.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
-
4
-
-
38549148703
-
The vertebrate genome annotation (Vega) database
-
Wilming, L.G., Gilbert, J.G., Howe, K., Trevanion, S., Hubbard, T. and Harrow, J.L. (2008) The vertebrate genome annotation (Vega) database. Nucleic Acids Res., 36, D753-D760.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wilming, L.G.1
Gilbert, J.G.2
Howe, K.3
Trevanion, S.4
Hubbard, T.5
Harrow, J.L.6
-
5
-
-
67650064594
-
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
-
Pruitt, K.D., Harrow, J., Harte, R.A., Wallin, C., Diekhans, M., Maglott, D.R., Searle, S., Farrell, C.M., Loveland, J.E., Ruef, B.J. et al. (2009) The consensus coding sequence (CCDS) project: identifying a common protein-coding gene set for the human and mouse genomes. Genome Res., 19, 1316-1323.
-
(2009)
Genome Res.
, vol.19
, pp. 1316-1323
-
-
Pruitt, K.D.1
Harrow, J.2
Harte, R.A.3
Wallin, C.4
Diekhans, M.5
Maglott, D.R.6
Searle, S.7
Farrell, C.M.8
Loveland, J.E.9
Ruef, B.J.10
-
6
-
-
84862258061
-
Tracking and coordinating an international curation effort for the CCDS Project
-
Harte, R.A., Farrell, C.M., Loveland, J.E., Suner, M.M., Wilming, L., Aken, B., Barrell, D., Frankish, A., Wallin, C., Searle, S. et al. (2012) Tracking and coordinating an international curation effort for the CCDS Project. Database J. Biol. Databases Curation, 2012, bas008.
-
(2012)
Database J. Biol. Databases Curation
, vol.2012
-
-
Harte, R.A.1
Farrell, C.M.2
Loveland, J.E.3
Suner, M.M.4
Wilming, L.5
Aken, B.6
Barrell, D.7
Frankish, A.8
Wallin, C.9
Searle, S.10
-
7
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE Project
-
Harrow, J., Frankish, A., Gonzalez, J.M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B.L., Barrell, D., Zadissa, A., Searle, S. et al. (2012) GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res., 22, 1760-1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
8
-
-
84870538715
-
The genetic landscape of mutations in Burkitt lymphoma
-
Love, C., Sun, Z., Jima, D., Li, G., Zhang, J., Miles, R., Richards, K.L., Dunphy, C.H., Choi, W.W., Srivastava, G. et al. (2012) The genetic landscape of mutations in Burkitt lymphoma. Nat. Genet., 44, 1321-1325.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1321-1325
-
-
Love, C.1
Sun, Z.2
Jima, D.3
Li, G.4
Zhang, J.5
Miles, R.6
Richards, K.L.7
Dunphy, C.H.8
Choi, W.W.9
Srivastava, G.10
-
9
-
-
84862777349
-
An analysis of exome sequencing for diagnostic testing of the genes associated with muscle disease and spastic paraplegia
-
Dias, C., Sincan, M., Cherukuri, P.F., Rupps, R., Huang, Y., Briemberg, H., Selby, K., Mullikin, J.C., Markello, T.C., Adams, D.R. et al. (2012) An analysis of exome sequencing for diagnostic testing of the genes associated with muscle disease and spastic paraplegia. Hum. Mutat., 33, 614-626.
-
(2012)
Hum. Mutat.
, vol.33
, pp. 614-626
-
-
Dias, C.1
Sincan, M.2
Cherukuri, P.F.3
Rupps, R.4
Huang, Y.5
Briemberg, H.6
Selby, K.7
Mullikin, J.C.8
Markello, T.C.9
Adams, D.R.10
-
10
-
-
84856306090
-
Genome-wide DNA methylation profiling using Infinium(R) assay
-
Bibikova, M., Le, J., Barnes, B., Saedinia-Melnyk, S., Zhou, L., Shen, R. and Gunderson, K.L. (2009) Genome-wide DNA methylation profiling using Infinium(R) assay. Epigenomics, 1, 177-200.
-
(2009)
Epigenomics
, vol.1
, pp. 177-200
-
-
Bibikova, M.1
Le, J.2
Barnes, B.3
Saedinia-Melnyk, S.4
Zhou, L.5
Shen, R.6
Gunderson, K.L.7
-
11
-
-
84879043343
-
Quantifying single nucleotide variant detection sensitivity in exome sequencing
-
Meynert, A.M., Bicknell, L.S., Hurles, M.E., Jackson, A.P. and Taylor, M.S. (2013) Quantifying single nucleotide variant detection sensitivity in exome sequencing. BMC Bioinformatics, 14, 195.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 195
-
-
Meynert, A.M.1
Bicknell, L.S.2
Hurles, M.E.3
Jackson, A.P.4
Taylor, M.S.5
-
12
-
-
84857990816
-
A comparative analysis of exome capture
-
Parla, J.S., Iossifov, I., Grabill, I., Spector, M.S., Kramer, M. and McCombie, W.R. (2011) A comparative analysis of exome capture. Genome Biol., 12, R97.
-
(2011)
Genome Biol.
, vol.12
-
-
Parla, J.S.1
Iossifov, I.2
Grabill, I.3
Spector, M.S.4
Kramer, M.5
McCombie, W.R.6
-
13
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Bernstein, B.E., Birney, E., Dunham, I., Green, E.D., Gunter, C. and Snyder, M. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
14
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
GTEx Consortium
-
GTEx Consortium (2013) The Genotype-Tissue Expression (GTEx) project. Nat. Genet., 45, 580-585.
-
(2013)
Nat. Genet.
, vol.45
, pp. 580-585
-
-
-
15
-
-
84876573388
-
The International Nucleotide Sequence Database Collaboration
-
Nakamura, Y., Cochrane, G. and Karsch-Mizrachi, I. (2013) The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res., 41, D21-D24.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Nakamura, Y.1
Cochrane, G.2
Karsch-Mizrachi, I.3
-
16
-
-
80053651587
-
GenBank
-
Benson, D.A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. and Sayers, E.W. (2013) GenBank. Nucleic Acids Res., 41, D36-D42.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
17
-
-
77954314621
-
Locus Reference Genomic sequences: An improved basis for describing human DNA variants
-
Dalgleish, R., Flicek, P., Cunningham, F., Astashyn, A., Tully, R.E., Proctor, G., Chen, Y., McLaren, W.M., Larsson, P., Vaughan, B.W. et al. (2010) Locus Reference Genomic sequences: an improved basis for describing human DNA variants. Genome Med., 2, 24.
-
(2010)
Genome Med.
, vol.2
, pp. 24
-
-
Dalgleish, R.1
Flicek, P.2
Cunningham, F.3
Astashyn, A.4
Tully, R.E.5
Proctor, G.6
Chen, Y.7
McLaren, W.M.8
Larsson, P.9
Vaughan, B.W.10
-
18
-
-
84880820841
-
Genome-wide annotation and quantitation of translation by ribosome profiling
-
Chapter 4, Unit 4 18
-
Ingolia, N.T., Brar, G.A., Rouskin, S., McGeachy, A.M. and Weissman, J.S. (2013) Genome-wide annotation and quantitation of translation by ribosome profiling. Curr. Protoc. Mol. Biol., Chapter 4, Unit 4 18.
-
(2013)
Curr. Protoc. Mol. Biol
-
-
Ingolia, N.T.1
Brar, G.A.2
Rouskin, S.3
McGeachy, A.M.4
Weissman, J.S.5
-
19
-
-
84866267681
-
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
-
Lee, S., Liu, B., Huang, S.X., Shen, B. and Qian, S.B. (2012) Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. Proc. Natl Acad.Sci. USA, 109, E2424-E2432.
-
(2012)
Proc. Natl Acad.Sci. USA
, vol.109
-
-
Lee, S.1
Liu, B.2
Huang, S.X.3
Shen, B.4
Qian, S.B.5
-
20
-
-
84861728180
-
5′ end-centered expression profiling using cap-analysis gene expression and next-generation sequencing
-
Takahashi, H., Lassmann, T., Murata, M. and Carninci, P. (2012) 5′ end-centered expression profiling using cap-analysis gene expression and next-generation sequencing. Nat. Protoc., 7, 542-561.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 542-561
-
-
Takahashi, H.1
Lassmann, T.2
Murata, M.3
Carninci, P.4
-
21
-
-
84871297843
-
Next-generation proteomics: Towards an integrative view of proteome dynamics
-
Altelaar, A.F., Munoz, J. and Heck, A.J. (2013) Next-generation proteomics: towards an integrative view of proteome dynamics. Nat. Rev. Genet., 14, 35-48.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 35-48
-
-
Altelaar, A.F.1
Munoz, J.2
Heck, A.J.3
-
22
-
-
34250219964
-
L1 elements, processed pseudogenes and retrogenes in mammalian genomes
-
Ding, W., Lin, L., Chen, B. and Dai, J. (2006) L1 elements, processed pseudogenes and retrogenes in mammalian genomes. IUBMB Life, 58, 677-685.
-
(2006)
IUBMB Life
, vol.58
, pp. 677-685
-
-
Ding, W.1
Lin, L.2
Chen, B.3
Dai, J.4
-
23
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
Uniprot Consortium.
-
Uniprot Consortium. (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res., 38, D142-D148.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
-
24
-
-
84867850145
-
NMD: A multifaceted response to premature translational termination
-
Kervestin, S. and Jacobson, A. (2012) NMD: a multifaceted response to premature translational termination. Nat. Rev. Mol. Cell Biol., 13, 700-712.
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 700-712
-
-
Kervestin, S.1
Jacobson, A.2
|