Analysis of global gene expression profile of rice in response to methylglyoxal indicates its possible role as a stress signal molecule

Frontiers in Plant Science

Volumn 6, Issue september, 2015, Pages

  Kaur, Charanpreet ^a   Kushwaha, Hemant R ^a   Mustafiz, Ananda ^a,c   Pareek, Ashwani ^b   Sopory, Sudhir K ^a   Singla Pareek, Sneh L ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b JAWAHARLAL NEHRU UNIVERSITY   (India)

^c SOUTH ASIAN UNIVERSITY   (India)

Author keywords

Methylglyoxal; Rice; SIgnal transduction; Signaling; Transcriptome

Indexed keywords

EID: 84940998805     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00682     Document Type: Article

References (42)

1. Bailey, T. L., Boden, M., Buske, F. A., Frith, M., Grant, C. E., Clementi, L., et al. (2009). MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208. doi: 10.1093/nar/gkp335
2. Booth, I. R., Ferguson, G. P., Miller, S., Li, C., Gunasekera, B., and Kinghorn, S. (2003). Bacterial production of methylglyoxal: a survival strategy or death by misadventure? Biochem. Soc. Trans. 31, 1406-1408. doi: 10.1042/bst0311406
3. 2+transients and inhibit growth in E. coli. Arch. Biochem. Biophys. 468, 107-113. doi: 10.1016/j.abb.2007.09.006
4. Chandler, P., and Robertson, M. (1994). Gene expression regulated by abscisic acid and its relation to stress tolerance. Ann. Rev. Plant Physiol. Plant Mol. Biol. 45, 113-141. doi: 10.1146/annurev.pp.45.060194.000553
5. Chang, T., Wang, R., Olson, D. J., Mousseau, D. D., Ross, A. R., and Wu, L. (2011). Modification of Akt1 by methylglyoxal promotes the proliferation of vascular smooth muscle cells. FASEB J. 25, 1746-1757. doi: 10.1096/fj.10-178053
6. Chen, L., Song, Y., Li, S., Zhang, L., Zou, C., and Yu, D. (2012). The role of WRKY transcription factors in plant abiotic stresses. Biochim. Biophys. Acta 1819, 120-128. doi: 10.1016/j.bbagrm.2011.09.002
7. Cho, Y. H., Hong, J. W., Kim, E. C., and Yoo, S. D. (2012). Regulatory functions of SnRK1 in stress-responsive gene expression and in plant growth and development.Plant Physiol. 158, 1955-1964. doi: 10.1104/pp.111.189829
8. Ferguson, G. P., Totemeyer, S., MacLean, M. J., and Booth, I. R. (1998). Methylglyoxal production in bacteria: suicide or survival? Arch. Microbiol. 170, 209-218. doi: 10.1007/s002030050635
9. Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., et al. (2004). A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39, 863-876. doi: 10.1111/j.1365-313X.2004.02171.x
10. Gao, L. L., and Xue, H. W. (2012). Global analysis of expression profiles of rice receptor-like kinase genes. Mol. Plant 5, 143-153. doi: 10.1093/mp/ssr062
11. Ghosh, A., Pareek, A., Sopory, S. K., and Singla-Pareek, S. L. (2014). A glutathione responsive rice glyoxalase II, OsGLYII-2, functions in salinity adaptation by maintaining better photosynthesis efficiency and anti-oxidant pool. Plant J. 80, 93-105. doi: 10.1111/tpj.12621
12. He, Z. H., He, D., and Kohorn, B. D. (1998). Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. Plant J. 14, 55-63. doi: 10.1046/j.1365-313X.1998.00092.x
13. Hoque, T. S., Uraji, M., Tuya, A., Nakamura, Y., and Murata, Y. (2012). Methylglyoxal inhibits seed germination and root elongation and up-regulates transcription of stress-responsive genes in ABA-dependent pathway in Arabidopsis. Plant Biol. (Stuttg) 14, 854-858. doi: 10.1111/j.1438-8677.2012.00607.x
14. Hossain, M. A., Hossain, M. Z., and Fujita, M. (2009). Stress- induced changes of methylglyoxal level and glyoxalase. I activity in pumpkin seedlings and cDNA cloning of glyoxalase I gene. Aust. J. Crop Sci. 3, 53-64.
15. Kalapos, M. P. (1999). Methylglyoxal in living organisms: chemistry, biochemistry, toxicology and biological implications. Toxicol. Lett. 110, 145-175. doi: 10.1016/S0378-4274(99)00160-5
16. Kaur, C., Ghosh, A., Pareek, A., Sopory, S. K., and Singla-Pareek, S. L. (2014b). Glyoxalases and stress tolerance in plants. Biochem. Soc. Trans. 42, 485-490. doi: 10.1042/BST20130242
17. Kaur, C., Singla-Pareek, S. L., and Sopory, S. K. (2014a). Glyoxalase and methylglyoxal as biomarkers for plant stress tolerance. Crit. Rev. Plant Sci. 33, 429-456. doi: 10.1080/07352689.2014.904147
18. Kaur, C., Vishnoi, A., Ariyadasa, T. U., Bhattacharya, A., Singla-Pareek, S. L., and Sopory, S. K. (2013). Episodes of horizontal gene-transfer and genefusion led to co-existence of different metal-ion specific glyoxalase I. Sci. Rep. 3, 3076. doi: 10.1038/srep03076
19. 2-typezincfinger transcription factors in stress responses. Plant Sci. 185-186, 78-85. doi: 10.1016/j.plantsci.2011.11.015
20. Lally, D., Ingmire, P., Tong, H. Y., and He, Z. H. (2001). Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology.Plant Cell 13, 1317-1331. doi: 10.1105/tpc.13.6.1317
21. Lee, S. E., Yang, H., Jeong, S. I., Jin, Y. H., Park, C. S., and Park, Y. S. (2011). Methylglyoxal-mediated alteration of gene expression in human endothelial cells.Biochip J. 5, 220-228. doi: 10.1007/s13206-011-5305-y
22. Maeta, K., Izawa, S., and Inoue, Y. (2005). Methylglyoxal, a metabolite derived from glycolysis, functions as a signal initiator of the high osmolarity glycerol-mitogen-activated protein kinase cascade and calcineurin/Crz1-mediated pathway in Saccharomyces cerevisiae. J. Biol. Chem. 280, 253-260. doi: 10.1074/jbc.M408061200
23. Maeta, K., Izawa, S., Okazaki, S., Kuge, S., and Inoue, Y. (2004). Activity of the Yap1 transcription factor in Saccharomyces cerevisiae is modulated by methylglyoxal, a metabolite derived from glycolysis. Mol. Cell Biol. 24, 8753-8764. doi: 10.1128/MCB.24.19.8753-8764.2004
24. Miyata, S., Miyazaki, H., Liu, B. F., Fukunaga, M., Hamada, Y., Ueyama, S., et al. (2002). Activation of MAP kinase superfamily signaling pathways by methylglyoxal.Int. Congr. Ser. 1245, 87-89. doi: 10.1016/s0531-5131(02)00913-5
25. Mizoguchi, T., Ichimura, K., and Shinozaki, K. (1997). Environmental stress response in plants: the role of mitogen-activated protein kinases. Trends Biotechnol. 15, 15-19. doi: 10.1016/S0167-7799(96)10074-3
26. Mukhopadhyay, P., Reddy, M. K., Singla-Pareek, S. L., and Sopory, S. K. (2011). Transcriptional downregulation of rice rpL32 gene under abiotic stress is associated with removal of transcription factors within the promoter region. PLoS ONE6:e28058. doi: 10.1371/journal.pone.0028058
27. Mustafiz, A., Singh, A. K., Pareek, A., Sopory, S. K., and Singla-Pareek, S. L. (2011). Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses. Funct. Integr. Genomics 11, 293-305. doi: 10.1007/s10142-010-0203-2
28. Neill, S. J., Desikan, R., Clarke, A., Hurst, R. D., and Hancock, J. T. (2002). Hydrogen peroxide and nitric oxide as signaling molecules in plants. J. Exp. Bot. 53, 1237-1247. doi: 10.1093/jexbot/53.372.1237
29. Rabbani, N., and Thornalley, P. J. (2012). Methylglyoxal, glyoxalase 1 and the dicarbonyl proteome. Amino Acids 42, 1133-1142. doi: 10.1007/s00726-010-0783-0
30. Rabbani, N., and Thornalley, P. J. (2014). Dicarbonyl proteome and genome damage in metabolic and vascular disease. Biochem. Soc. Trans. 42, 425-432. doi: 10.1042/BST20140018
31. Ramasamy, R., Yan, S. F., and Schmidt, A. M. (2006). Methylglyoxal comes of AGE.Cell 124, 258-260. doi: 10.1016/j.cell.2006.01.002
32. Ray, S., Dutta, S., Halder, J., and Ray, M. (1994). Inhibition of electron flow through complex I of the mitochondrial respiratory chain of Ehrlich ascites carcinoma cells by methylglyoxal. Biochem. J. 303, 69-72. doi: 10.1042/bj3030069
33. Singla-Pareek, S. L., Reddy, M. K., and Sopory, S. K. (2003). Genetic engineering of the glyoxalase pathway in tobacco leads to enhanced salinity tolerance. Proc. Natl. Acad. Sci. U.S.A. 100, 14672-14677. doi: 10.1073/pnas.2034667100
34. Singla-Pareek, S. L., Yadav, S. K., Pareek, A., Reddy, M. K., and Sopory, S. K. (2006). Transgenic tobacco overexpressing glyoxalase pathway enzymes grow and set viable seeds in zinc-spiked soils. Plant Physiol. 140, 613-623. doi: 10.1104/pp.105.073734
35. Sivaguru, M., Ezaki, B., He, Z. H., Tong, H., Osawa, H., Baluska, F., et al. (2003). Aluminum-induced gene expression and protein localization of a cell wall-associated receptor kinase in Arabidopsis. Plant Physiol. 132, 2256-2266. doi: 10.1104/pp.103.022129
36. Smékalová, V., Doskočilová, A., Komis, G., and Samaj, J. (2014). Crosstalk between secondary messengers, hormones and MAPK modules during abiotic stress signalling in plants. Biotechnol. Adv. 32, 2-11. doi: 10.1016/j.biotechadv.2013.07.009
37. Sun, S. J., Guo, S. Q., Yang, X., Bao, Y. M., Tang, H. J., Sun, H., et al. (2010). Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. J. Exp. Bot. 61, 2807-2818. doi: 10.1093/jxb/erq120
38. Thornalley, P. J. (2008). Protein and nucleotide damage by glyoxal and methylglyoxal in physiological systems-role in ageing and disease. Drug Metabol. Drug Interact. 23, 125-150. doi: 10.1515/DMDI.2008.23.1-2.125
39. Yadav, S. K., Singla-Pareek, S. L., Ray, M., Reddy, M. K., and Sopory, S. K. (2005a). Methylglyoxal levels in plants under salinity stress are dependent on glyoxalase I and glutathione. Biochem. Biophys. Res. Commun. 337, 61-67. doi: 10.1016/j.bbrc.2005.08.263
40. Yadav, S. K., Singla-Pareek, S. L., Reddy, M. K., and Sopory, S. K. (2005b). Transgenic tobacco plants overexpressing glyoxalase enzymes resist an increase in methylglyoxal and maintain higher reduced glutathione levels under salinity stress.FEBS Lett. 579, 6265-6271. doi: 10.1016/j.febslet.2005.10.006
41. Yoshiba, Y., Kiyosue, T., Nakashima, K., Yamaguchi-Shinozaki, K., and Shinozaki, K. (1997). Regulation of levels of proline as an osmolyte in plants under water stress.Plant Cell Physiol. 38, 1095-1102. doi: 10.1093/oxfordjournals.pcp.a029093
42. Yoshida, S., Forno, D. A., Cock, J. H., and Gomez, K. A. (1972). Laboratory Manual for Physiological Studies of Rice. Manila: International Rice Research Institute.