The phylogenetic analysis of fungi associated with lichenized ascomycete genus Bryoria reveals new lineages in the Tremellales including a new species Tremella huuskonenii hyperparasitic on Phacopsis huuskonenii

Fungal Biology

Volumn 119, Issue 9, 2015, Pages 844-856

  Lindgren, Hanna ^a   Diederich, Paul ^b   Goward, Trevor ^c   Myllys, Leena ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b MUSÉE NATIONAL D HISTOIRE NATURELLE   (Luxembourg)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Endolichenic fungi; Host specificity; Lichenicolous fungi; Secondary chemistry

Indexed keywords

FUNGUS; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; HOST SPECIFICITY; LICHEN; NEW SPECIES; PARASITE; PHYLOGENETICS;

EUROPE; NORTH AMERICA;

BRYORIA; FUNGI; PHACOPSIS HUUSKONENII; TREMELLA; TREMELLALES;

FUNGAL DNA; RIBOSOMAL SPACER DNA;

ASCOMYCETES; BASIDIOMYCETES; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; ISOLATION AND PURIFICATION; LICHEN (ORGANISM); MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY;

ASCOMYCOTA; BASIDIOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; GENETIC VARIATION; HAPLOTYPES; LICHENS; MOLECULAR SEQUENCE DATA; PHYLOGENY;

EID: 84940794450     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2015.06.005     Document Type: Article

References (47)

1. Arnold A.E., Miadlikowska J., Higgins K.L., Sarvate S.D., Gugger P., Way A., Hofstetter V., Kauff F., Lutzoni F. A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?. Systematic Biology 2009, 58:283-297.
2. Baloch E., Gilenstam G., Wedin M. The relationship of Odontotrema (Odontotremataceae) and the resurrected Sphaeropezia (Stictidaceae)-new combinations and three new Sphaeropezia species. Mycologia 2013, 105:384-397.
3. Clement M., Posada D., Crandall K. TCS: a computer program to estimate gene genealogies. Molecular Ecology 2000, 9:1657-1660.
4. Crespo A., Kauff F., Divakar P.K., Amo G., Arguello A., Blanco O., Cubas P., del Prado R., Elix J.A., Esslinger T.L., et al. Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 2010, 59:1735-1753.
5. Crespo A., Lumbsch T., Mattson J.-E., Blanco O., Divakar P.K., Articus K., Wiklund E., Bawingan P.A., Wedin M. Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene. Molecular Phylogenetics and Evolution 2007, 44:812-824.
6. Darriba D., Taboada G.L., Doallo R., Posada D. JmodelTest2: More models, new heuristics and parallel computing. Nature Methods 2012, 9:772.
7. Diederich P. The lichenicolous heterobasidiomycetes. Bibliotheca Lichenologica 1996, 61:1-198.
8. Diederich P. New or interesting lichenicolous heterobasidiomycetes. Opuscula Philolichenum 2007, 4:11-22.
9. Diederich P., Zhurbenko M., Etayo J. The lichenicolous species of Odontotrema (syn. Lethariicola) (Ascomycota, Ostropales). Lichenologist 2002, 34:479-501.
10. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 2004, 32:1792-1797.
11. Ekman S. PCR optimization and troubleshooting with special reference to the amplification of ribosomal DNA in lichenized fungi. Lichenologist 1999, 31:517-531.
12. Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
13. Gargas A., DePriest P.T. A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA. Mycologia 1996, 88:745-748.
14. Gargas A., Taylor J.W. Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi. Mycologia 1992, 84:589-592.
15. Guindon S., Gascuel O. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 2003, 52:696-704.
16. Hafellner J. Studien über lichenicole Pilze und Flechten V. Über die Gattung Phacopsis Tul. emend 1987, vol. 7:343-352. Körber (Lecanorales). Herzogia.
17. Hafellner J. Beiträge zu einem Prodromus der lichenicolen Pilze Österreichs und angrenzender Gebiete. I. Einige neue oder seltene Arten. Herzogia 1994, vol. 10:1-28.
18. Hawksworth D.L. Secondary fungi in lichen symbioses: parasites, saprophytes and parasymbionts. Journal of Hattori Botanical Laboratory 1982, 52:357-366.
19. Holien H. The genus Bryoria sect. Implexae in Norway. Lichenologist 1989, 21:243-258.
20. Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
21. Kirschner R., Sampaio J.P., Gadanho M., Weiß M., Oberwinkler F. Cuniculitrema polymorpha (Tremellales, gen. nov. and sp. nov.), a heterobasidiomycete vectored by bark beetles, which is the teleomorph of Sterigmatosporidium polymorphum. Antonie van Leeuwenhoek 2001, 80:149-161.
22. Lawrey J.D., Diederich P. Lichenicolous fungi: interactions, evolution and biodiversity. Bryologist 2003, 106:80-120.
23. Lawrey J.D., Diederich P. Lichenicolous Fungi - worldwide checklist, including isolated cultures and sequences available 2011, URL, [1/7/2014]. http://www.lichenicolous.net.
24. Leavitt S.D. Assessing Traditional Morphology- and Chemistry-based Species Circumscriptions in Lichenized Ascomycetes: character evolution and species delimitation in common western North American lichens 2010, Ph.D. Dissertation, Brigham Young University, Provo, Utah, USA.
25. Lindgren H., Velmala S., Högnabba F., Goward T., Holien H., Myllys L. High fungal selectivity for algal symbionts in the genus Bryoria. Lichenologist 2014, 46:681-695.
26. Lohtander K., Myllys L., Sundin R., Källersjö M., Tehler A. The species pair concept in the lichen Dendrographa leucophaea (Arthoniales) analyses based on ITS sequences. Bryologist 1998, 101:404-411.
27. Maddison D.R., Maddison W.P. MacClade 4: analysis of phylogeny and character evolution 2005, Sinauer Associates, Sunderland, MA, USA.
28. Millanes A.M., Diederich P., Ekman S., Wedin M. Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi). Molecular Phylogenetics and Evolution 2011, 61:12-28.
29. Millanes A.M., Truong C., Westberg M., Diederich P., Wedin M. Host switching promotes diversity in host-specialized mycoparasitic fungi: uncoupled evolution in the Biatoropsis-Usnea system. Evolution 2014, 68:1576-1593.
30. Millanes A.M., Westberg M., Wedin M., Diederich P. Tremella diploschistina (Tremellales, Basidiomycota, Fungi). Lichenologist 2012, 44:321-332.
31. Myllys L., Lohtander K., Källersjö M., Tehler A. Sequence insertions and ITS data provide congruent information on Roccella canariensis and R. tuberculata (Arthoniales, Euascomycetes) phylogeny. Molecular Phylogenetics and Evolution 1999, 12:295-309.
32. Myllys L., Stenroos S., Thell A. New genes for phylogenetic studies of lichenized fungi: glyceraldehyde-3-phosphate dehydrogenase and beta-tubulin genes. Lichenologist 2002, 34:237-246.
33. Myllys L., Velmala S., Holien H., Halonen P., Wang L.-S., Goward T. Phylogeny of the genus Bryoria. Lichenologist 2011, 43:617-638.
34. Orange A., James P.W., White F.J. Microchemical Methods for the Identification of Lichens 2001, British Lichen Society, London.
35. Pegler D.N. Agaric flora of the Lesser Antilles. Kew Bulletin Additional Series 1982, vol. 9:1-668.
36. Peršoh D., Rambold G. Phacopsis - a lichenicolous genus of the family Parmeliaceae. Mycological Progress 2002, 1:43-55.
37. Santesson R., Moberg R., Nordin A., Tønsberg T., Vitikainen O. Lichen-forming and Lichenicolous Fungi of Fennoscandia 2004, Museum of Evolution, Uppsala University.
38. Schmitt I., Crespo A., Divakar P.K., Frankhauser J.D., Herman-Sackett E., Kalb K., Nelsen M.P., Nelson N.A., Rivas-Plata E., Shimp A.D., Widhelm T., Lumbsch H.T. New primers for promising single-copy genes in fungal phylogenetics and systematics. Persoonia 2009, 23:35-40.
39. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014, 30:1312-1313.
40. Triebel D., Rambold G. A conspectus of the genus Phacopsis (Lecanorales). Bryologist 1995, 98:71-83.
41. U'Ren J.M., Lutzoni F., Miadlikowska J., Arnold A.E. Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens. Microbial Ecology 2010, 60:340-353.
42. U'Ren J.M., Lutzoni F., Miadlikowska J., Laetsch A.D., Arnold A.E. Host end geographic structure of endophytic and endolichenic fungi at continental scale. American Journal of Botany 2012, 99:898-914.
43. Velmala S., Myllys L., Goward T., Holien H., Halonen P. Taxonomy of Bryoria section Implexae (Parmeliaceae, Lecanorales) in North America and Europe, based on chemical, morphological and molecular data. Annales Botanici Fennici 2014, 51:345-371.
44. Vilgalys R., Hester M. Rapid genetic identifcation and mapping of enzymatically amplifed ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 1990, 172:4238-4246.
45. Werth S., Millanes A.M., Wedin M., Scheidegger C. Lichenicolous fungi show population subdivision by host species but do not share population history with their hosts. Fungal Biology 2013, 117:71-84.
46. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal DNA genes for phylogenetics. PCR Protocols: a guide to methods and applications 1990, 315-322. Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
47. Zhurbenko M.P., Vershinina S.E. Opegrapha bryoriae sp. nov. and other lichenicolous fungi from Asian Russia. Herzogia 2014, 27:93-109.