Target-driven self-assembly of stacking deoxyribonucleic acids for highly sensitive assay of proteins

Analytica Chimica Acta

Volumn 890, Issue , 2015, Pages 1-6

  Cao, Ya ^a   Chen, Weiwei ^a   Han, Peng ^a   Wang, Zhuxin ^a   Li, Genxi ^a,b  

^a SHANGHAI UNIVERSITY   (China)

^b NANJING UNIVERSITY   (China)

Author keywords

Aptamer; Electrochemical; Interferon gamma; Self assembly; Signal amplification

Indexed keywords

ANTIBIOTICS; DIAGNOSIS; DNA; ELECTRODES; ENZYME ELECTRODES; ENZYMES; GLYCOPROTEINS; SIGNAL PROCESSING; SILVER NANOPARTICLES;

APTAMERS; ELECTROCHEMICAL; ELECTROCHEMICAL SIGNALS; ELECTRODE SURFACES; HIGHLY SENSITIVE DETECTIONS; INTERFERON-GAMMA; SIGNAL AMPLIFICATIONS; SIGNAL ENHANCEMENT;

SELF ASSEMBLY;

APTAMER; DNA; GAMMA INTERFERON; SILVER NANOPARTICLE; NANOPARTICLE; SILVER;

ANALYTIC METHOD; ARTICLE; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DNA HAIRPIN; DNA HYBRIDIZATION; DNA PROBE; ELECTROCHEMICAL DETECTION; FEASIBILITY STUDY; HUMAN; LIMIT OF DETECTION; NUCLEIC ACID AMPLIFICATION; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN TARGETING; REGENERATION; REPRODUCIBILITY; SENSITIVITY ANALYSIS; SIGNAL DETECTION; STACKING DNA TARGET DRIVEN SELF ASSEMBLY; CHEMISTRY; ELECTROCHEMICAL ANALYSIS; ELECTRODE; GENETIC PROCEDURES; METABOLISM; SYNTHESIS;

APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; DNA; ELECTROCHEMICAL TECHNIQUES; ELECTRODES; INTERFERON-GAMMA; LIMIT OF DETECTION; NANOPARTICLES; SILVER;

EID: 84940793800     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2015.05.023     Document Type: Article

References (42)

1. Luo X., Davis J.J. Electrical biosensors and the label free detection of protein disease biomarkers. Chem. Soc. Rev. 2013, 42:5944-5962.
2. Alberti D., van't Erve M., Stefania R., Ruggiero M.R., Tapparo M., Geninatti Crich S., Aime S. A quantitative relaxometric version of the ELISA test for the measurement of cell surface biomarkers. Angew. Chem. Int. Ed. 2014, 53:3488-3491.
3. Chikkaveeraiah B.V., Bhirde A.A., Morgan N.Y., Eden H.S., Chen X.Y. Electrochemical immunosensors for detection of cancer protein biomarkers. ACS Nano 2012, 6:6546-6561.
4. Lee J.R., Lee J., Kim S.K., Kim K.P., Park H.S., Yeo W.S. Mass spectrometry signal amplification method for attomolar detection of antigens using small-molecule-tagged gold microparticles. Angew. Chem. Int. Ed. 2008, 47:9518-9521.
5. Liu D.B., Yang J., Wang H.F., Wang Z.L., Huang X.L., Wang Z.T., Niu G., Hight Walker A.R., Chen X.Y. Glucose oxidase-catalyzed growth of gold nanoparticles enables quantitative detection of attomolar cancer biomarkers. Anal. Chem. 2014, 86:5800-5806.
6. Cao Y., Chen D.H., Chen W.W., Yu J.C., Chen Z., Li G.X. Aptamer-based homogeneous protein detection using cucurbit[7]uril functionalized electrode. Anal. Chim. Acta 2014, 812:45-49.
7. Chen Y.L., Corn R.M. DNAzyme footprinting: detecting protein-aptamer complexation on surfaces by blocking DNAzyme cleavage activity. J. Am. Chem. Soc. 2013, 135:2072-2075.
8. Li C., Wang Z.Y., Gao T., Duan A.P., Li G.X. Fabrication of hand-in-hand nanostructure for one-step protein detection. Chem. Commun. 2013, 49:3760-3762.
9. Garai-Ibabe G., Möller M., Saa L., Grinyte R., Pavlov V. Peroxidase-mimicking DNAzyme modulated growth of CdS nanocrystalline structures in situ through redox reaction: application to development of genosensors and aptasensor. Anal. Chem. 2014, 86:10059-10064.
10. Monsur Ali M., Li F., Zhang Z.Q., Zhang K.X., Kang D.K., Ankrum J.A., Chris Le X., Zhao W.A. Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine. Chem. Soc. Rev. 2014, 43:3324-3341.
11. Qiu L.P., Wu Z.S., Shen G.L., Yu R.Q. Highly sensitive and selective bifunctional oligonucleotide probe for homogeneous parallel fluorescence detection of protein and nucleotide sequence. Anal. Chem. 2011, 83:3050-3057.
12. Miao P., Tang Y., Wang B., Han K., Chen X., Sun H. An aptasensor for detection of potassium ions based on RecJf exonuclease mediated signal amplification. Analyst 2014, 139:5695-5699.
13. Liu S.F., Wang Y., Zhang C.X., Lin Y., Li F. Homogeneous electrochemical aptamer-based ATP assay with signal amplification by exonuclease III assisted target recycling. Chem. Commun. 2013, 49:2335-2337.
14. Zhao J., Hu S.S., Zhong W.D., Wu J.G., Shen Z.M., Chen Z., Li G.X. Highly sensitive electrochemical aptasensor based on a ligase-assisted exonuclease III-catalyzed degradation reaction. ACS Appl. Mater. Interfaces 2014, 6:7070-7075.
15. Fu B., Cao J.C., Jiang W., Wang L. A novel enzyme-free and label-free fluorescence aptasensor for amplified detection of adenosine. Biosens. Bioelectron. 2013, 44:52-56.
16. Li H.L., Ren J.T., Liu Y.Q., Wang E.K. Application of DNA machine in amplified DNA detection. Chem. Commun. 2014, 50:704-706.
17. Li F., Zhang H.Q., Wang Z.X., Li X.K., Li X.F., Chris Le X. Dynamic DNA assemblies mediated by binding-induced DNA strand displacement. J. Am. Chem. Soc. 2013, 135:2443-2446.
18. Wang F., Lu C.H., Willner I. From cascaded catalytic nucleic acids to enzyme-DNA nanostructures: controlling reactivity, sensing, logic operations, and assembly of complex structures. Chem. Rev. 2014, 114:2881-2941.
19. Qing Z.H., He X.X., Huang J., Wang K.M., Zou Z., Qing T.P., Mao Z.G., Shi H., He D.G. Target-catalyzed dynamic assembly-based pyrene excimer switching for enzyme-free nucleic acid amplified detection. Anal. Chem. 2014, 86:10059-10064.
20. Wang G.F., He X.P., Wang L., Zhang X.J. A folate receptor electrochemical sensor based on terminal protection and supersandwich DNAzyme amplification. Biosens. Bioelectron. 2013, 42:337-341.
21. Liu S.F., Lin Y., Liu T., Cheng C.B., Wei W.J., Wang L., Li F. Enzyme-free and label-free ultrasensitive electrochemical detection of DNA and adenosine triphosphate by dendritic DNA concatamer-based signal amplification. Biosens. Bioelectron. 2014, 56:12-18.
22. Yurke B., Turberfield A.J., Mills A.P., Simmel F.C., Neumann J.L. A DNA-fuelled molecular machine made of DNA. Nature 2000, 406:605-608.
23. Zhang D.Y., Seelig G. Dynamic DNA nanotechnology using strand-displacement reactions. Nat. Chem. 2011, 3:103-113.
24. Zhang D.Y., Turberfield A.J., Yurke B., Winfree E. Engineering entropy-driven reactions and networks catalyzed by DNA. Science 2007, 318:1121-1125.
25. Dirks R.M., Pierce N.A. Triggered amplification by hybridization chain reaction. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:15275-15278.
26. Li B.L., Ellington A.D., Chen X. Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic Acids Res. 2011, 39:e110.
27. Jung C., Ellington A.D. Diagnostic applications of nucleic acid circuits. Acc. Chem. Res. 2014, 47:1825-1835.
28. Choi J., Love K.R., Gong Y., Gierahn T.M., Love J.C. Immuno-hybridization chain reaction for enhancing detection of individual cytokine-secreting human peripheral mononuclear cells. Anal. Chem. 2011, 83:6890-6895.
29. Xu Y.Y., Zhou W.J., Zhou M., Xiang Y., Yuan R., Chai Y.Q. Toehold strand displacement-driven assembly of G-quadruplex DNA for enzyme-free and non-label sensitive fluorescent detection of thrombin. Biosens. Bioelectron. 2015, 64:306-310.
30. Hou T., Wang X.Z., Liu X.J., Lu T.T., Liu S.F., Li F. Amplified detection of T4 polynucleotide kinase activity by the coupled λ exonuclease cleavage reaction and catalytic assembly of bimolecular beacons. Anal. Chem. 2014, 86:884-890.
31. Liu S.F., Wang Y., Ming J.J., Lin Y., Cheng C.B., Li F. Enzyme-free and ultrasensitive electrochemical detection of nucleic acids by target catalyzed hairpin assembly followed with hybridization chain reaction. Biosens. Bioelectron. 2013, 49:472-477.
32. Farrar M.A., Schreiber R.D. The molecular cell biology of interferon-gamma and its receptor. Annu. Rev. Immunol. 1993, 11:571-661.
33. Liu Y., Tuleouva N., Ramanculov E., Revzin A. Aptamer-based electrochemical biosensor for interferon gamma detection. Anal. Chem. 2010, 82:8131-8136.
34. Peng C.Y., Song Y.H., Wei G., Zhang W.X., Li Z., Dong W.F. Self-assembly of lambda-DNA networks/Ag nanoparticles: hybrid architecture and active-SERS substrate. J. Colloid Interface Sci. 2008, 317:183-190.
35. Lai G.S., Yan F., Wu J., Leng C., Ju H.X. Ultrasensitive multiplexed immunoassay with electrochemical stripping analysis of silver nanoparticles catalytically deposited by gold nanoparticles and enzymatic reaction. Anal. Chem. 2011, 83:2726-2732.
36. Zhuang J.Y., Fu L.B., Xu M.D., Yang H.H., Chen G.N., Tang D.P. Sensitive electrochemical monitoring of nucleic acids coupling DNA nanostructures with hybridization chain reaction. Anal. Chim. Acta 2013, 783:17-23.
37. Cao Y., Zhu S., Yu J.C., Zhu X.J., Yin Y.M., Li G.X. Protein detection based on small molecule-linked DNA. Anal. Chem. 2012, 84:4314-4320.
38. Centi S., Tombelli S., Minunni M., Mascini M. Aptamer-based detection of plasma proteins by an electrochemical assay coupled to magnetic beads. Anal. Chem. 2007, 79:1466-1473.
39. Zhao J.J., Chen C.F., Zhang L.G., Jiang J.H., Yu R.Q. An electrochemical aptasensor based on hybridization chain reaction with enzyme-signal amplification for interferon-gamma detection. Biosens. Bioelectron. 2012, 36:129-134.
40. Zhang H.X., Jiang B.Y., Xiang Y., Chai Y.Q., Yuan R. Label-free and amplified electrochemical detection of cytokine based on hairpin aptamer and catalytic DNAzyme. Analyst 2012, 137:1020-1023.
41. Zhou W.J., Gong X., Xiang Y., Yuan R., Chai Y.Q. Target-triggered quadratic amplification for label-free and sensitive visual detection of cytokines based on hairpin aptamer DNAzyme probes. Anal. Chem. 2014, 86:953-958.
42. Zhang K., Ren T.L., Wang K., Zhu X., Wu H., Xie M.H. Sensitive and selective amplified visual detection of cytokines based on exonuclease III-aided target recycling. Chem. Commun. 2014, 50:13342-13345.