'Flatten plus': A recent implementation in WSxM for biological research

Bioinformatics

Volumn 31, Issue 17, 2015, Pages 2918-2920

  Gimeno, Alejandro ^a,b   Ares, Pablo ^a   Horcas, Ignacio ^b   Gil, Adriana ^c   Gómez Rodríguez, José M ^a   Colchero, Jaime ^d   Gómez Herrero, Julio ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^b WSxM solutions   (Spain)

^c Nanotec Electronica SL   (Spain)

^d UNIVERSITY OF MURCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CYCLE PROTEIN; DNA; NONHISTONE PROTEIN; STRUCTURAL MAINTENANCE OF CHROMOSOME PROTEIN 1;

ALGORITHM; CHEMISTRY; HUMAN; IMAGE ENHANCEMENT; IMAGE PROCESSING; MEDICAL RESEARCH; PROCEDURES; SCANNING PROBE MICROSCOPY; SOFTWARE; ULTRASTRUCTURE;

ALGORITHMS; BIOMEDICAL RESEARCH; CELL CYCLE PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA; HUMANS; IMAGE ENHANCEMENT; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, SCANNING PROBE; SOFTWARE;

EID: 84940783982     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv278     Document Type: Article

References (25)

1. Baro A.M., et al. (1985). Determination of surface topography of biological specimens at high-resolution by scanning tunnelling microscopy. Nature, 315, 253-254
2. Binnig G., et al. (1982). Surface studies by scanning tunneling microscopy. Phys. Rev. Lett., 49, 57-61
3. Binnig G., et al. (1986). Atomic force microscope. Phys. Rev. Lett., 56, 930-933
4. Burnham N.A., et al. (1993). Interpretation of force curves in force microscopy. Nanotechnology, 4, 64-80
5. Eigler D.M., and Schweizer E.K. (1990). Positioning single atoms with a scanning tunneling microscope. Nature, 344, 524-526
6. Endo M., et al. (2014). Helical DNA Origami tubular structures with various sizes, and arrangements. Angew. Chem. Int. Ed., 53, 7484-7490
7. Fisicaro E., et al. (2014). Nonviral gene delivery: gemini bispyridinium surfactant- based DNA nanoparticles. J. Phys. Chem. B, 118, 13183-13191
8. Fogarty D.P., et al. (2006). Minimizing image-processing artifacts in scanning tunnelingmicroscopy using linear-regression fitting. Rev. Sci. Instrum., 77, 126104
9. Gould S., et al. (1988). Molecular resolution images of amino-acid crystals with the atomic force microscope. Nature, 332, 332-334
10. Hansma H.G., et al. (1992). Reproducible imaging, and dissection of plasmid DNA under liquid with the atomic force microscope. Science, 256, 1180-1184
11. Horcas I., et al. (2007). WSXM: a software for scanning probe microscopy, and a tool for nanotechnology. Rev. Sci. Instrum., 78, 013705
12. Ivanovska I.L., et al. (2004). Bacteriophage capsids: tough nanoshells with complex elastic properties. Proc. Natl Acad. Sci. US A, 101, 7600-7605
13. Jaksa G., et al. (2014). Influence of different solvents on the morphology of APTMS-modified silicon surfaces. Appl. Surf. Sci., 315, 516-522
14. Kim B., et al. (2014). Ternary, and senary representations using DNA doublecrossover tiles. Nanotechnology, 25, 105601
15. Marchi A.N., et al
16. Miles P., and Frankel D. (2014). Lipid directed assembly of the HIV capsid protein. Soft Matter, 10, 9562-9567
17. Moon Y., et al. (2014). Nanoscale topographical replication of graphene architecture by artificial DNA nanostructures. Appl. Phys. Lett., 104, 231904
18. Radmacher M., et al. (1996). Measuring the viscoelastic properties of human platelets with the atomic force microscope. Biophys. J., 70, 556-567
19. Rief M., et al. (1997). Reversible unfolding of individual titin immunoglobulin domains by AFM. Science, 276, 1109-1112
20. Schouterden K., et al. (1996). Optimal filtering of scanning probe microscope images for wear analysis of smooth surfaces. J. Vac. Sci. Technol. B, 14, 3445-3451
21. Uprety B., et al. (2014). Site-specific metallization of multiple metals on a single DNA Origami template. Langmuir, 30, 1134-1141
22. Villarrubia J.S. (1997). Algorithms for scanned probe microscope image simulation, surface reconstruction, and tip estimation. J. Res. Natl Inst. Stand. Technol., 102, 425-454
23. Wagner P. (1998). Immobilization strategies for biological scanning probe microscopy. FEBS Lett., 430, 112-115
24. Wang Y., et al. (2014). Single molecular investigation of DNA looping, and aggregation by restriction endonuclease BspMI. Sci. Rep., 4, 5897
25. Yamamoto S., et al. (2014). Single Molecule Visualization, and Characterization of Sox2-Pax6 Complex Formation on A Regulatory DNA Element Using A DNA Origami Frame. Nano Lett., 14, 2286-2292