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Volumn 370, Issue 1678, 2015, Pages

Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

Author keywords

Archaea; Eukaryogenesis; Metagenomics; Microbial diversity; Single cell genomics; Tree of life

Indexed keywords

ANCESTRY; BACTERIUM; CELLS AND CELL COMPONENTS; ENDOSYMBIONT; EUKARYOTE; GENOMICS; MICROBIAL COMMUNITY; ORIGIN OF LIFE; SPECIES DIVERSITY;

EID: 84940706935     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2014.0328     Document Type: Article
Times cited : (40)

References (79)
  • 1
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley TM, Martin W. 2006 Eukaryotic evolution, changes and challenges. Nature 440, 623–630. (doi:10.1038/nature04546)
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 2
    • 77957134043 scopus 로고    scopus 로고
    • The origin of eukaryotes and their relationship with the Archaea: Are we at a phylogenomic impasse? Nat
    • Gribaldo S, Poole AM, Daubin V, Forterre P, Brochier-Armanet C. 2010 The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? Nat. Rev. Microbiol. 8, 743–752. (doi:10.1038/nrmicro2426)
    • (2010) Rev. Microbiol , vol.8 , pp. 743-752
    • Gribaldo, S.1    Poole, A.M.2    Daubin, V.3    Forterre, P.4    Brochier-Armanet, C.5
  • 3
    • 84903388029 scopus 로고    scopus 로고
    • The archaeal legacy of eukaryotes: A phylogenomic perspective. Cold Spring Harbor Perspect
    • Guy L, Saw JH, Ettema TJ. 2014 The archaeal legacy of eukaryotes: a phylogenomic perspective. Cold Spring Harbor Perspect. Biol. 6, a016022. (doi:10.1101/cshperspect.a016022)
    • (2014) Biol , vol.6
    • Guy, L.1    Saw, J.H.2    Ettema, T.J.3
  • 4
    • 77955039174 scopus 로고    scopus 로고
    • The origin and early evolution of eukaryotes in the light of phylogenomics
    • Koonin EV. 2010 The origin and early evolution of eukaryotes in the light of phylogenomics. Genome Biol. 11, 209. (doi:10.1186/gb-2010-11-5-209)
    • (2010) Genome Biol , vol.11
    • Koonin, E.V.1
  • 5
    • 27844490046 scopus 로고    scopus 로고
    • Archaebacteria (Archaea) and the origin of the eukaryotic nucleus
    • Martin W. 2005 Archaebacteria (Archaea) and the origin of the eukaryotic nucleus. Curr. Opin. Microbiol. 8, 630–637. (doi:10.1016/j.mib.2005.10.004)
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 630-637
    • Martin, W.1
  • 6
    • 0035197418 scopus 로고    scopus 로고
    • An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (Mitochondria and hydrogenosomes), and their heterotrophic lifestyle
    • Martin W, Hoffmeister M, Rotte C, Henze K. 2001 An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle. Biol. Chem. 382, 1521–1539. (doi:10.1515/BC.2001.187)
    • (2001) Biol. Chem , vol.382 , pp. 1521-1539
    • Martin, W.1    Hoffmeister, M.2    Rotte, C.3    Henze, K.4
  • 7
    • 78751579092 scopus 로고    scopus 로고
    • Reconciling an archaeal origin of eukaryotes with engulfment: A biologically plausible update of the Eocyte hypothesis
    • Poole AM, Neumann N. 2011 Reconciling an archaeal origin of eukaryotes with engulfment: a biologically plausible update of the Eocyte hypothesis. Res. Microbiol. 162, 71–76. (doi:10.1016/j.resmic.2010.10.002)
    • (2011) Res. Microbiol , vol.162 , pp. 71-76
    • Poole, A.M.1    Neumann, N.2
  • 8
    • 0034913239 scopus 로고    scopus 로고
    • The origin and early evolution of mitochondria
    • REVIEWS1018
    • Gray MW, Burger G, Lang BF. 2001 The origin and early evolution of mitochondria. Genome Biol. 2, pREVIEWS1018.
    • (2001) Genome Biol
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 9
    • 82355180998 scopus 로고    scopus 로고
    • The archaeal ’TACK’ superphylum and the origin of eukaryotes
    • Guy L, Ettema TJ. 2011 The archaeal ’TACK’ superphylum and the origin of eukaryotes. Trends Microbiol. 19, 580–587. (doi:10.1016/j.tim.2011.09.002)
    • (2011) Trends Microbiol , vol.19 , pp. 580-587
    • Guy, L.1    Ettema, T.J.2
  • 10
    • 84905513696 scopus 로고    scopus 로고
    • The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes
    • Koonin EV, Yutin N. 2014 The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes. Cold Spring Harbor Perspect. Biol. 6, a016188. (doi:10.1101/cshperspect.a016188)
    • (2014) Cold Spring Harbor Perspect. Biol
    • Koonin, E.V.1    Yutin, N.2
  • 11
    • 84873164495 scopus 로고    scopus 로고
    • From archaeon to eukaryote: The evolutionary dark ages of the eukaryotic cell
    • Martijn J, Ettema TJ. 2013 From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell. Biochem. Soc. Trans. 41, 451–457. (doi:10.1042/BST20120292)
    • (2013) Biochem. Soc. Trans , vol.41 , pp. 451-457
    • Martijn, J.1    Ettema, T.J.2
  • 12
    • 84890355580 scopus 로고    scopus 로고
    • An archaeal origin of eukaryotes supports only two primary domains of life
    • Williams TA, Foster PG, Cox CJ, Embley TM. 2013 An archaeal origin of eukaryotes supports only two primary domains of life. Nature 504, 231–236. (doi:10.1038/nature12779)
    • (2013) Nature , vol.504 , pp. 231-236
    • Williams, T.A.1    Foster, P.G.2    Cox, C.J.3    Embley, T.M.4
  • 13
    • 84869133972 scopus 로고    scopus 로고
    • A congruent phylogenomic signal places eukaryotes within the Archaea
    • Williams TA, Foster PG, Nye TM, Cox CJ, Embley TM. 2012 A congruent phylogenomic signal places eukaryotes within the Archaea. Proc. R. Soc. B 279, 4870–4879. (doi:10.1098/rspb.2012.1795)
    • (2012) Proc. R. Soc. B , vol.279 , pp. 4870-4879
    • Williams, T.A.1    Foster, P.G.2    Nye, T.M.3    Cox, C.J.4    Embley, T.M.5
  • 14
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
    • Cavalier-Smith T. 2002 The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int. J. Syst. Evol. Microbiol. 52, 297–354.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 297-354
    • Cavalier-Smith, T.1
  • 15
    • 84890035918 scopus 로고    scopus 로고
    • The common ancestor of archaea and eukarya was not an archaeon
    • Forterre P. 2013 The common ancestor of archaea and eukarya was not an archaeon. Archaea 2013, 372396. (doi:10.1155/2013/372396)
    • (2013) Archaea , vol.2013
    • Forterre, P.1
  • 16
    • 84929329445 scopus 로고    scopus 로고
    • Complex Archaea that bridge the gap between prokaryotes and eukaryotes
    • Spang A et al. 2015 Complex Archaea that bridge the gap between prokaryotes and eukaryotes. Nature 521, 173–179. (doi:10.1038/nature14447)
    • (2015) Nature , vol.521 , pp. 173-179
    • Spang, A.1
  • 17
    • 62349137215 scopus 로고    scopus 로고
    • The origins of phagocytosis and eukaryogenesis
    • Yutin N, Wolf MY, Wolf YI, Koonin EV. 2009 The origins of phagocytosis and eukaryogenesis. Biol. Direct. 4, 9. (doi:10.1186/1745-6150-4-9)
    • (2009) Biol. Direct , vol.4
    • Yutin, N.1    Wolf, M.Y.2    Wolf, Y.I.3    Koonin, E.V.4
  • 18
    • 84867649459 scopus 로고    scopus 로고
    • Archaea in organic-lean and organic-rich marine subsurface sediments: An environmental gradient reflected in distinct phylogenetic lineages
    • Durbin AM, Teske A. 2012 Archaea in organic-lean and organic-rich marine subsurface sediments: an environmental gradient reflected in distinct phylogenetic lineages. Front. Microbiol. 3, 168. (doi:10.3389/fmicb.2012.00168)
    • (2012) Front. Microbiol , vol.3
    • Durbin, A.M.1    Teske, A.2
  • 19
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: Application of genomics to uncultured microorganisms
    • Handelsman J. 2004 Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. MMBR 68, 669–685. (doi:10.1128/MMBR.68.4.669-685.2004)
    • (2004) Microbiol. Mol. Biol. Rev. MMBR , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 20
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • Huson DH, Auch AF, Qi J, Schuster SC. 2007 MEGAN analysis of metagenomic data. Genome Res. 17, 377–386. (doi:10.1101/gr.5969107)
    • (2007) Genome Res , vol.17 , pp. 377-386
    • Huson, D.H.1    Auch, A.F.2    Qi, J.3    Schuster, S.C.4
  • 23
    • 84862697946 scopus 로고    scopus 로고
    • The PhyloPythiaS web server for taxonomic assignment of metagenome sequences
    • Patil KR, Roune L, McHardy AC. 2012 The PhyloPythiaS web server for taxonomic assignment of metagenome sequences. PLoS ONE 7, e38581. (doi:10.1371/journal.pone.0038581)
    • (2012) Plos ONE , vol.7
    • Patil, K.R.1    Roune, L.2    McHardy, A.C.3
  • 26
    • 79955611184 scopus 로고    scopus 로고
    • PhymmBL expanded: Confidence scores, custom databases, parallelization and more. Nat
    • Brady A, Salzberg S. 2011 PhymmBL expanded: confidence scores, custom databases, parallelization and more. Nat. Methods 8, 367. (doi:10.1038/nmeth0511-367)
    • (2011) Methods , vol.8
    • Brady, A.1    Salzberg, S.2
  • 27
    • 69549135124 scopus 로고    scopus 로고
    • Phymm and PhymmBL: Metagenomic phylogenetic classification with interpolated Markov models
    • Brady A, Salzberg SL. 2009 Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat. Methods 6, 673–676. (doi:10.1038/nmeth.1358)
    • (2009) Nat. Methods , vol.6 , pp. 673-676
    • Brady, A.1    Salzberg, S.L.2
  • 28
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson GW et al. 2004 Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37–43. (doi:10.1038/nature02340)
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1
  • 29
    • 84863049441 scopus 로고    scopus 로고
    • MetaCluster 4.0: A novel binning algorithm for NGS reads and huge number of species
    • Wang Y, Leung HC, Yiu SM, Chin FY. 2012 MetaCluster 4.0: a novel binning algorithm for NGS reads and huge number of species. J. Comput. Biol. 19, 241–249. (doi:10.1089/cmb.2011.0276)
    • (2012) J. Comput. Biol , vol.19 , pp. 241-249
    • Wang, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 30
    • 84925636192 scopus 로고    scopus 로고
    • MaxBin: An automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
    • Wu YW, Tang YH, Tringe SG, Simmons BA, Singer SW. 2014 MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. Microbiome 2, 26. (doi:10.1186/2049-2618-2-26)
    • (2014) Microbiome , vol.2
    • Wu, Y.W.1    Tang, Y.H.2    Tringe, S.G.3    Simmons, B.A.4    Singer, S.W.5
  • 31
    • 84875832926 scopus 로고    scopus 로고
    • The binning of metagenomic contigs for microbial physiology of mixed cultures. Front
    • Strous M, Kraft B, Bisdorf R, Tegetmeyer HE. 2012 The binning of metagenomic contigs for microbial physiology of mixed cultures. Front. Microbiol. 3, 410. (doi:10.3389/fmicb.2012.00410)
    • (2012) Microbiol , vol.3
    • Strous, M.1    Kraft, B.2    Bisdorf, R.3    Tegetmeyer, H.E.4
  • 32
    • 84879678051 scopus 로고    scopus 로고
    • Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
    • Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. 2013 Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat. Biotechnol. 31, 533–538. (doi:10.1038/nbt.2579)
    • (2013) Nat. Biotechnol , vol.31 , pp. 533-538
    • Albertsen, M.1    Hugenholtz, P.2    Skarshewski, A.3    Nielsen, K.L.4    Tyson, G.W.5    Nielsen, P.H.6
  • 33
    • 84908597294 scopus 로고    scopus 로고
    • Binning metagenomic contigs by coverage and composition
    • Alneberg J et al. 2014 Binning metagenomic contigs by coverage and composition. Nat. Methods 11, 1144–1146. (doi:10.1038/nmeth.3103)
    • (2014) Nat. Methods , vol.11 , pp. 1144-1146
    • Alneberg, J.1
  • 34
    • 84907682734 scopus 로고    scopus 로고
    • GroopM: An automated tool for the recovery of population genomes from related metagenomes
    • Imelfort M, Parks D, Woodcroft BJ, Dennis P, Hugenholtz P, Tyson GW. 2014 GroopM: an automated tool for the recovery of population genomes from related metagenomes. PeerJ 2, e603. (doi:10.7717/peerj.603)
    • (2014) Peerj , vol.2
    • Imelfort, M.1    Parks, D.2    Woodcroft, B.J.3    Dennis, P.4    Hugenholtz, P.5    Tyson, G.W.6
  • 36
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. 2013 Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res. 23, 111–120. (doi:10.1101/gr.142315.112)
    • (2013) Genome Res , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 37
    • 80755168360 scopus 로고    scopus 로고
    • Genomic analysis at the single-cell level
    • Kalisky T, Blainey P, Quake SR. 2011 Genomic analysis at the single-cell level. Annu. Rev. Genet. 45, 431–445. (doi:10.1146/annurev-genet-102209-163607)
    • (2011) Annu. Rev. Genet , vol.45 , pp. 431-445
    • Kalisky, T.1    Blainey, P.2    Quake, S.R.3
  • 38
    • 84906317195 scopus 로고    scopus 로고
    • Recent advances in genomic DNA sequencing of microbial species from single cells
    • Lasken RS, McLean JS. 2014 Recent advances in genomic DNA sequencing of microbial species from single cells. Nat. Rev. Genet. 15, 577–584. (doi:10.1038/nrg3785)
    • (2014) Nat. Rev. Genet , vol.15 , pp. 577-584
    • Lasken, R.S.1    McLean, J.S.2
  • 39
    • 84868098266 scopus 로고    scopus 로고
    • Single cell genomics: An individual look at microbes
    • Stepanauskas R. 2012 Single cell genomics: an individual look at microbes. Curr. Opin. Microbiol. 15, 613–620. (doi:10.1016/j.mib.2012.09.001)
    • (2012) Curr. Opin. Microbiol , vol.15 , pp. 613-620
    • Stepanauskas, R.1
  • 40
    • 79952050667 scopus 로고    scopus 로고
    • Genome of a low-salinity ammoniaoxidizing archaeon determined by single-cell and metagenomic analysis
    • Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR. 2011 Genome of a low-salinity ammoniaoxidizing archaeon determined by single-cell and metagenomic analysis. PLoS ONE 6, e16626. (doi:10.1371/journal.pone.0016626)
    • (2011) Plos ONE , vol.6
    • Blainey, P.C.1    Mosier, A.C.2    Potanina, A.3    Francis, C.A.4    Quake, S.R.5
  • 41
    • 34547540925 scopus 로고    scopus 로고
    • Dissecting biological ‘dark matter’ with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
    • Marcy Y et al. 2007 Dissecting biological ‘dark matter’ with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl Acad. Sci. USA 104, 11 889–11 894. (doi:10.1073/pnas.0704662104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , Issue.11
    • Marcy, Y.1
  • 42
    • 84901996995 scopus 로고    scopus 로고
    • Microfluidics expanding the frontiers of microbial ecology
    • Rusconi R, Garren M, Stocker R. 2014 Microfluidics expanding the frontiers of microbial ecology. Annu. Rev. Biophys. 43, 65–91. (doi:10.1146/annurevbiophys-051013-022916)
    • (2014) Annu. Rev. Biophys , vol.43 , pp. 65-91
    • Rusconi, R.1    Garren, M.2    Stocker, R.3
  • 45
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • Rinke C et al. 2013 Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431–437. (doi:10.1038/nature12352)
    • (2013) Nature , vol.499 , pp. 431-437
    • Rinke, C.1
  • 46
    • 84888774923 scopus 로고    scopus 로고
    • Microbiology. Genomes from metagenomics
    • Sharon I, Banfield JF. 2013 Microbiology. Genomes from metagenomics. Science 342, 1057–1058. (doi:10.1126/science.1247023)
    • (2013) Science , vol.342 , pp. 1057-1058
    • Sharon, I.1    Banfield, J.F.2
  • 47
    • 84920678390 scopus 로고    scopus 로고
    • Reconstructing each cell’s genome within complex microbial communities: Dream or reality? Front
    • Clingenpeel S, Clum A, Schwientek P, Rinke C, Woyke T. 2014 Reconstructing each cell’s genome within complex microbial communities: dream or reality? Front. Microbiol. 5, 771. (doi:10.3389/fmicb.2014.00771)
    • (2014) Microbiol , vol.5
    • Clingenpeel, S.1    Clum, A.2    Schwientek, P.3    Rinke, C.4    Woyke, T.5
  • 48
    • 84869998312 scopus 로고    scopus 로고
    • Current opportunities and challenges in microbial metagenome analysis: A bioinformatic perspective
    • Teeling H, Glockner FO. 2012 Current opportunities and challenges in microbial metagenome analysis: a bioinformatic perspective. Brief. Bioinform. 13, 728–742. (doi:10.1093/bib/bbs039)
    • (2012) Brief. Bioinform , vol.13 , pp. 728-742
    • Teeling, H.1    Glockner, F.O.2
  • 49
    • 84878724342 scopus 로고    scopus 로고
    • Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. Nat
    • Dodsworth JA et al. 2013 Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. Nat. Commun. 4, 1854. (doi:10.1038/ncomms2884)
    • (2013) Commun , vol.4
    • Dodsworth, J.A.1
  • 50
    • 65449134335 scopus 로고    scopus 로고
    • Assembling the marine metagenome, one cell at a time
    • Woyke T et al. 2009 Assembling the marine metagenome, one cell at a time. PLoS ONE 4, e5299. (doi:10.1371/journal.pone.0005299)
    • (2009) Plos ONE , vol.4
    • Woyke, T.1
  • 51
    • 84883870098 scopus 로고    scopus 로고
    • Omic approaches in microbial ecology: Charting the unknown
    • Baker BJ, Dick GJ. 2013 Omic approaches in microbial ecology: charting the unknown. Microbe 8, 353–360. (doi:10.1128/microbe.8.353.1)
    • (2013) Microbe , vol.8 , pp. 353-360
    • Baker, B.J.1    Dick, G.J.2
  • 52
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns SM, Fundyga RE, Jeffries MW, Pace NR. 1994 Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl Acad. Sci. USA 91, 1609–1613. (doi:10.1073/pnas.91.5.1609)
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 53
    • 0015385518 scopus 로고
    • Ecology of sulfuroxidizing bacteria in hot acid soils
    • Fliermans CB, Brock TD. 1972 Ecology of sulfuroxidizing bacteria in hot acid soils. J. Bacteriol. 111, 343–350.
    • (1972) J. Bacteriol , vol.111 , pp. 343-350
    • Fliermans, C.B.1    Brock, T.D.2
  • 54
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns SM, Delwiche CF, Palmer JD, Pace NR. 1996 Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl Acad. Sci. USA 93, 9188–9193. (doi:10.1073/pnas.93.17.9188)
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 56
    • 14044264258 scopus 로고    scopus 로고
    • Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
    • Spear JR, Walker JJ, McCollom TM, Pace NR. 2005 Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc. Natl Acad. Sci. USA 102, 2555–2560. (doi:10.1073/pnas.0409574102)
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 2555-2560
    • Spear, J.R.1    Walker, J.J.2    McCollom, T.M.3    Pace, N.R.4
  • 57
    • 84894363922 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated MCG Archaea assessed by metagenome and gene expression analyses
    • Meng J, Xu J, Qin D, He Y, Xiao X, Wang F. 2014 Genetic and functional properties of uncultivated MCG Archaea assessed by metagenome and gene expression analyses. ISME J. 8, 650–659. (doi:10.1038/ismej.2013.174)
    • (2014) ISME J , vol.8 , pp. 650-659
    • Meng, J.1    Xu, J.2    Qin, D.3    He, Y.4    Xiao, X.5    Wang, F.6
  • 58
    • 84876291747 scopus 로고    scopus 로고
    • Predominant Archaea in marine sediments degrade detrital proteins
    • Lloyd KG et al. 2013 Predominant Archaea in marine sediments degrade detrital proteins. Nature 496, 215–218. (doi:10.1038/nature12033)
    • (2013) Nature , vol.496 , pp. 215-218
    • Lloyd, K.G.1
  • 59
    • 78650051812 scopus 로고    scopus 로고
    • Discovery of a black smoker vent field and vent fauna at the Arctic Mid-Ocean Ridge
    • Pedersen RB et al. 2010 Discovery of a black smoker vent field and vent fauna at the Arctic Mid-Ocean Ridge. Nat. Commun. 1, 126. (doi:10.1038/ncomms1124)
    • (2010) Nat. Commun , vol.1
    • Pedersen, R.B.1
  • 60
  • 61
    • 35648962896 scopus 로고    scopus 로고
    • Supertrees and symbiosis in eukaryote genome evolution
    • Esser C, Martin W. 2007 Supertrees and symbiosis in eukaryote genome evolution. Trends Microbiol. 15, 435–437. (doi:10.1016/j.tim.2007.09.001)
    • (2007) Trends Microbiol , vol.15 , pp. 435-437
    • Esser, C.1    Martin, W.2
  • 62
    • 4344618574 scopus 로고    scopus 로고
    • Ancestral lipid biosynthesis and early membrane evolution
    • Pereto J, Lopez-Garcia P, Moreira D. 2004 Ancestral lipid biosynthesis and early membrane evolution. Trends Biochem. Sci. 29, 469–477. (doi:10.1016/j.tibs.2004.07.002)
    • (2004) Trends Biochem. Sci , vol.29 , pp. 469-477
    • Pereto, J.1    Lopez-Garcia, P.2    Moreira, D.3
  • 63
    • 34547751897 scopus 로고    scopus 로고
    • Supertrees disentangle the chimerical origin of eukaryotic genomes
    • Pisani D, Cotton JA, McInerney JO. 2007 Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol. Biol. Evol. 24, 1752–1760. (doi:10.1093/molbev/msm095)
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1752-1760
    • Pisani, D.1    Cotton, J.A.2    McInerney, J.O.3
  • 64
    • 0032568587 scopus 로고    scopus 로고
    • Genomic evidence for two functionally distinct gene classes
    • Rivera MC, Jain R, Moore JE, Lake JA. 1998 Genomic evidence for two functionally distinct gene classes. Proc. Natl Acad. Sci. USA 95, 6239–6244. (doi:10.1073/pnas.95.11.6239)
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 6239-6244
    • Rivera, M.C.1    Jain, R.2    Moore, J.E.3    Lake, J.A.4
  • 65
    • 84897859298 scopus 로고    scopus 로고
    • Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes
    • Rochette NC, Brochier-Armanet C, Gouy M. 2014 Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes. Mol. Biol. Evol. 31, 832–845. (doi:10.1093/molbev/mst272)
    • (2014) Mol. Biol. Evol , vol.31 , pp. 832-845
    • Rochette, N.C.1    Brochier-Armanet, C.2    Gouy, M.3
  • 66
    • 84862562185 scopus 로고    scopus 로고
    • An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin
    • Thiergart T, Landan G, Schenk M, Dagan T, Martin WF. 2012 An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol. Evol. 4, 466–485. (doi:10.1093/gbe/evs018)
    • (2012) Genome Biol. Evol , vol.4 , pp. 466-485
    • Thiergart, T.1    Landan, G.2    Schenk, M.3    Dagan, T.4    Martin, W.F.5
  • 67
    • 10644271631 scopus 로고    scopus 로고
    • Archaeal genetics—the third way
    • Allers T, Mevarech M. 2005 Archaeal genetics—the third way. Nat. Rev. Genet. 6, 58–73. (doi:10.1038/nrg1504)
    • (2005) Nat. Rev. Genet , vol.6 , pp. 58-73
    • Allers, T.1    Mevarech, M.2
  • 68
    • 0038575389 scopus 로고    scopus 로고
    • Archaeal chromatin and transcription
    • Reeve JN. 2003 Archaeal chromatin and transcription. Mol. Microbiol. 48, 587–598. (doi:10.1046/j.1365-2958.2003.03439.x)
    • (2003) Mol. Microbiol , vol.48 , pp. 587-598
    • Reeve, J.N.1
  • 69
    • 58249106878 scopus 로고    scopus 로고
    • A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya
    • Brochier-Armanet C, Gribaldo S, Forterre P. 2008 A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya. Biol. Direct 3, 54. (doi:10.1186/1745-6150-3-54)
    • (2008) Biol. Direct , vol.3
    • Brochier-Armanet, C.1    Gribaldo, S.2    Forterre, P.3
  • 70
    • 67650641167 scopus 로고    scopus 로고
    • Cell division and the ESCRT complex: A surprise from the Archaea
    • Ettema TJ, Bernander R. 2009 Cell division and the ESCRT complex: A surprise from the Archaea. Commun. Integr. Biol. 2, 86–88. (doi:10.4161/cib.7523)
    • (2009) Commun. Integr. Biol , vol.2 , pp. 86-88
    • Ettema, T.J.1    Bernander, R.2
  • 72
    • 58149230938 scopus 로고    scopus 로고
    • A role for the ESCRT system in cell division in Archaea
    • Samson RY, Obita T, Freund SM, Williams RL, Bell SD. 2008 A role for the ESCRT system in cell division in Archaea. Science 322, 1710–1713. (doi:10.1126/science.1165322)
    • (2008) Science , vol.322 , pp. 1710-1713
    • Samson, R.Y.1    Obita, T.2    Freund, S.M.3    Williams, R.L.4    Bell, S.D.5
  • 73
    • 84868624185 scopus 로고    scopus 로고
    • An archaeal origin for the actin cytoskeleton: Implications for eukaryogenesis
    • Bernander R, Lind AE, Ettema TJ. 2011 An archaeal origin for the actin cytoskeleton: implications for eukaryogenesis. Commun. Integr. Biol. 4, 664–667. (doi:10.4161/cib.16974)
    • (2011) Commun. Integr. Biol , vol.4 , pp. 664-667
    • Bernander, R.1    Lind, A.E.2    Ettema, T.J.3
  • 74
    • 79955706693 scopus 로고    scopus 로고
    • An actin-based cytoskeleton in Archaea
    • Ettema TJ, Lindas AC, Bernander R. 2011 An actin-based cytoskeleton in Archaea. Mol. Microbiol. 80, 1052–1061. (doi:10.1111/j.1365-2958.2011.07635.x)
    • (2011) Mol. Microbiol , vol.80 , pp. 1052-1061
    • Ettema, T.J.1    Lindas, A.C.2    Bernander, R.3
  • 75
    • 84858968457 scopus 로고    scopus 로고
    • Archaeal origin of tubulin
    • Yutin N, Koonin EV. 2012 Archaeal origin of tubulin. Biol. Direct 7, 10. (doi:10.1186/1745-6150-7-10)
    • (2012) Biol. Direct , vol.7
    • Yutin, N.1    Koonin, E.V.2
  • 76
    • 39049143397 scopus 로고    scopus 로고
    • Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and ‘Korarchaeota’
    • Koonin EV, Makarova KS, Elkins JG. 2007 Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and ‘Korarchaeota’. Biol. Direct. 2, 38. (doi:10.1186/1745-6150-2-38)
    • (2007) Biol. Direct , vol.2
    • Koonin, E.V.1    Makarova, K.S.2    Elkins, J.G.3
  • 77
    • 79955598535 scopus 로고    scopus 로고
    • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
    • Nunoura T et al. 2011 Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res. 39, 3204–3223. (doi:10.1093/nar/gkq1228)
    • (2011) Nucleic Acids Res , vol.39 , pp. 3204-3223
    • Nunoura, T.1
  • 78
    • 84867745042 scopus 로고    scopus 로고
    • Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
    • Kubo K, Lloyd KG, Biddle JF, Amann R, Teske A, Knittel K. 2012 Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J. 6, 1949–1965. (doi:10.1038/ismej.2012.37)
    • (2012) ISME J , vol.6 , pp. 1949-1965
    • Kubo, K.1    Lloyd, K.G.2    Biddle, J.F.3    Amann, R.4    Teske, A.5    Knittel, K.6
  • 79
    • 0024293322 scopus 로고
    • Nucleotide sequence of pig plasma gelsolin. Comparison of protein sequence with human gelsolin and other actin-severing proteins shows strong homologies and evidence for large internal repeats
    • Way M, Weeds A. 1988 Nucleotide sequence of pig plasma gelsolin. Comparison of protein sequence with human gelsolin and other actin-severing proteins shows strong homologies and evidence for large internal repeats. J. Mol. Biol. 203, 1127–1133. (doi:10.1016/0022-2836(88)90132-5)
    • (1988) J. Mol. Biol , vol.203 , pp. 1127-1133
    • Way, M.1    Weeds, A.2


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