Ancestral lipid biosynthesis and early membrane evolution

Trends in Biochemical Sciences

Volumn 29, Issue 9, 2004, Pages 469-477

  Peretó, Juli ^a,b   López García, Purificación ^a   Moreira, David ^a  

^a UNIVERSITÉ PARIS DESCARTES   (France)

^b UNIVERSITY OF VALENCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ETHER DERIVATIVE; FATTY ACID ESTER; GLYCEROPHOSPHATE; ISOPRENOID; MEMBRANE LIPID; MEMBRANE PHOSPHOLIPID; OXIDOREDUCTASE;

ARCHAEBACTERIUM; BACTERIAL GENE; BACTERIAL MEMBRANE; CELL MEMBRANE; EUKARYOTE; EUKARYOTE EVOLUTION; FATTY ACID METABOLISM; FATTY ACID SYNTHESIS; LIPID MEMBRANE; LIPOGENESIS; MOLECULAR EVOLUTION; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN FAMILY; REVIEW; SEQUENCE HOMOLOGY; STEREOCHEMISTRY;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA;

EID: 4344618574     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibs.2004.07.002     Document Type: Article

References (40)

1. M. Kates The phytanyl ether-linked polar lipids and isoprenoid neutral lipids of extremely halophilic bacteria Prog. Chem. Fats Other Lipids 15 1978 301 342
2. M. Kates Membrane lipids of archaea M. Kates D.J. Kushner A.T. Matheson The Biochemistry of Archaea (Archaebacteria) 1993 Elsevier Science 261 295
3. H.K. Mangold, and F. Paltauf Ether Lipids: Biochemical and Biomedical Aspects 1983 Academic Press
4. R. Huber Aquifex pyrophilus gen. nov., sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxiding bacteria Syst. Appl. Microbiol. 15 1992 340 351
5. A. Gattinger Phospholipid etherlipid and phospholipid fatty acid fingerprints in selected euryarchaeotal monocultures for taxonomic profiling FEMS Microbiol. Lett. 213 2002 133 139
6. H. Daiyasu Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase Protein Eng. 15 2002 987 995
7. Y. Koga Did archaeal and bacterial cells arise independently from noncellular precursors? A hypothesis stating that the advent of membrane phospholipid with enantiomeric glycerophosphate backbones caused the separation of the two lines of descent J. Mol. Evol. 46 1998 54 63
8. G. Wächtershäusser Before enzymes and templates: theory of surface metabolism Microbiol. Rev. 52 1988 452 484
9. W. Martin, and M.J. Russell On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells Philos. Trans. R. Soc. London Ser. B 358 2003 59 83
10. M. Russell Pyrite and the origin of life Nature 344 1990 387
11. M. Russell, and A.J. Hall The emergence of life from iron monosulfide bubbles at a submarine hydrothermal redox and pH front J. Geol. Soc. Lond. 154 1997 377 402
12. G. Wächtershäuser From pre-cells to Eukarya - a tale of two lipids Mol. Microbiol. 47 2003 13 22
13. O. Kandler The early diversification of life S. Bengston Early Life on Earth (Nobel Symposium No. 84) 1994 Columbia University Press 152 160
14. O. Kandler Cell wall biochemistry in Archaea and its phylogenetic implications J. Biol. Phys. 20 1994 165 169
15. Kandler, O. (1998) The early diversification of life and the origin of the three domains: a proposal. In Thermophiles: The Keys To Molecular Evolution And The Origin Of Life (Wiegel, J. and Adams, M.W.W. eds), pp. 19-28, Taylor and Francis
16. Y. Boucher Lateral gene transfer and the origins of prokaryotic groups Annu. Rev. Genet. 37 2003 283 328
17. H. Philippe, and C.J. Douady Horizontal gene transfer and phylogenetics Curr. Opin. Microbiol. 6 2003 498 505
18. E.P. Carpenter Structure of dehydroquinate synthase reveals an active site capable of multistep catalysis Nature 394 1998 299 302
19. S.N. Ruzheinikov Glycerol dehydrogenase: structure, specificity, and mechanism of a family III polyol dehydrogenase Structure 9 2001 789 802
20. K.L. Kavanagh Crystal structure of Pseudomonas fluorescens mannitol 2-dehydrogenase: evidence for a very divergent long-chain dehydrogenase family Chem. Biol. Interact. 143 2003 551 558
21. R.E. Campbell The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation Biochemistry 39 2000 7012 7023
22. E.R. Olivera Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolon Proc. Natl. Acad. Sci. U. S. A. 95 1998 6419 6424
23. J.K. Hiltunen, and Y. Qin β-Oxidation - strategies for the metabolism of a wide variety of acyl-CoA esters Biochim. Biophys. Acta 1484 2000 117 128
24. J.S. Youngleson Homology between hydroxybutyryl and hydroxyacyl coenzyme A dehydrogenase enzymes from Clostridium acetobutylicum fermentation and vertebrate fatty acid β-oxidation pathways J. Bacteriol. 171 1989 6800 6807
25. M. Nishihara sn-glycerol-1-phosphate-forming activities in Archaea: separation of archaeal phospholipid biosynthesis and glycerol catabolism by glycerophosphate enantiomers J. Bacteriol. 181 1999 1330 1333
26. B.M. Lange Isoprenoid biosynthesis: The evolution of two ancient and distinct pathways across genomes Proc. Natl. Acad. Sci. U. S. A. 97 2000 13172 13177
27. +-ATPase: implications for the origin of eukaryotes Proc. Natl. Acad. Sci. U. S. A. 86 1989 6661 6665
28. S. Gribaldo, and P. Cammarano The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery J. Mol. Evol. 47 1998 508 516
29. G. Wächtershäuser Towards reconstruction of ancestral genomes by gene cluster alignment Syst. Appl. Microbiol. 21 1998 473 477
30. Q. She The complete genome of the crenarchaeon Sulfolobus solfataricus P2 Proc. Natl. Acad. Sci. U. S. A. 98 2001 7835 7840
31. J.W. Campbell, and J.E. Cronan Bacterial fatty acid biosynthesis: targets for antibacterial drug discovery Annu. Rev. Microbiol. 55 2001 305 332
32. A. Osterman, and R. Overbeek Missing genes in metabolic pathways: a comparative genomics approach Curr. Opin. Chem. Biol. 7 2003 238 251
33. G. Ourisson, and Y. Nakatani The terpenoid theory of the origin of cellular life: the evolution of terpenoids to cholesterol Chem. Biol. 1 1994 11 23
34. G. Wächtershäusser Groundworks for an evolutionary biochemistry: the iron-sulfur world Prog. Biophys. Mol. Biol. 58 1992 85 201
35. D. Deamer The first cell membranes Astrobiology 2 2002 371 381
36. D.D. Leipe Did DNA replication evolve twice independently? Nucleic Acids Res. 27 1999 3389 3401
37. G.J. Olsen, and C.R. Woese Archaeal genomics: an overview Cell 89 1997 991 994
38. E. Crooke Escherichia coli DnaA protein-phospholipid interactions: in vitro and in vivo Biochimie 83 2001 19 23
39. F. Ronquist, and J.P. Huelsenbeck MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 2003 1572 1574
40. S.F. Altschul Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402