메뉴 건너뛰기




Volumn 21, Issue 9, 2015, Pages 874.e9-874.e21

Accurate genotyping of hepatitis C virus through nucleotide sequencing and identification of new HCV subtypes in China population

Author keywords

Genotype; Hepatitis C virus; Ns5b; Sequencing; Subtype

Indexed keywords

NONSTRUCTURAL PROTEIN 5B; VIRUS DNA; VIRUS RNA; NS-5 PROTEIN, HEPATITIS C VIRUS; PRIMER DNA; VIRUS PROTEIN;

EID: 84940614829     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2015.05.034     Document Type: Article
Times cited : (14)

References (49)
  • 1
    • 84880313007 scopus 로고    scopus 로고
    • Global control of hepatitis c: where challenge meets opportunity
    • Thomas D.L. Global control of hepatitis c: where challenge meets opportunity. Nat Med 2013, 19:850-858.
    • (2013) Nat Med , vol.19 , pp. 850-858
    • Thomas, D.L.1
  • 2
    • 84876149257 scopus 로고    scopus 로고
    • Global epidemiology of hepatitis C virus infection: new estimates of age-specific antibody to HCV seroprevalence
    • Mohd Hanafiah K., Groeger J., Flaxman A.D., Wiersma S.T. Global epidemiology of hepatitis C virus infection: new estimates of age-specific antibody to HCV seroprevalence. Hepatology 2013, 57:1333-1342.
    • (2013) Hepatology , vol.57 , pp. 1333-1342
    • Mohd Hanafiah, K.1    Groeger, J.2    Flaxman, A.D.3    Wiersma, S.T.4
  • 3
    • 78751621217 scopus 로고    scopus 로고
    • Evolving epidemiology of hepatitis c virus
    • Lavanchy D. Evolving epidemiology of hepatitis c virus. Clin Microbiol Infect 2011, 17:107-115.
    • (2011) Clin Microbiol Infect , vol.17 , pp. 107-115
    • Lavanchy, D.1
  • 4
    • 79952277505 scopus 로고    scopus 로고
    • The incidence and epidemiology of hepatocellular carcinoma: a global and regional perspective
    • Venook A.P., Papandreou C., Furuse J., de Guevara L.L. The incidence and epidemiology of hepatocellular carcinoma: a global and regional perspective. Oncologist 2010, 15(Suppl.4):5-13.
    • (2010) Oncologist , vol.15 , pp. 5-13
    • Venook, A.P.1    Papandreou, C.2    Furuse, J.3    de Guevara, L.L.4
  • 5
    • 79958717571 scopus 로고    scopus 로고
    • The global health burden of hepatitis C virus infection
    • Negro F., Alberti A. The global health burden of hepatitis C virus infection. Liver Int 2011, 31(Suppl.2):1-3.
    • (2011) Liver Int , vol.31 , pp. 1-3
    • Negro, F.1    Alberti, A.2
  • 6
    • 0033429088 scopus 로고    scopus 로고
    • Viral heterogeneity of the hepatitis C virus
    • Simmonds P. Viral heterogeneity of the hepatitis C virus. JHepatol 1999, 31(Suppl.1):54-60.
    • (1999) JHepatol , vol.31 , pp. 54-60
    • Simmonds, P.1
  • 7
    • 79952480837 scopus 로고    scopus 로고
    • HCV-genotypes: a review on their origin, global status, assay system, pathogenecity and response to treatment
    • Irshad M., Ansari M.A., Singh A., Nag P., Raghvendra L., Singh S., et al. HCV-genotypes: a review on their origin, global status, assay system, pathogenecity and response to treatment. Hepato-gastroenterology 2010, 57:1529-1538.
    • (2010) Hepato-gastroenterology , vol.57 , pp. 1529-1538
    • Irshad, M.1    Ansari, M.A.2    Singh, A.3    Nag, P.4    Raghvendra, L.5    Singh, S.6
  • 8
    • 84873894047 scopus 로고    scopus 로고
    • Hepatitis C virus: types, subtypes, and beyond
    • Smith D.B., Simmonds P. Hepatitis C virus: types, subtypes, and beyond. Methods Mol Med 1999, 19:133-146.
    • (1999) Methods Mol Med , vol.19 , pp. 133-146
    • Smith, D.B.1    Simmonds, P.2
  • 11
    • 0028007736 scopus 로고
    • Sequence variability of hepatitis C virus and its clinical relevance
    • Dusheiko G., Simmonds P. Sequence variability of hepatitis C virus and its clinical relevance. JViral Hepat 1994, 1:3-15.
    • (1994) JViral Hepat , vol.1 , pp. 3-15
    • Dusheiko, G.1    Simmonds, P.2
  • 12
    • 0033404626 scopus 로고    scopus 로고
    • Clinical significance of hepatitis C virus genotypes
    • Mondelli M.U., Silini E. Clinical significance of hepatitis C virus genotypes. JHepatol 1999, 31(Suppl.1):65-70.
    • (1999) JHepatol , vol.31 , pp. 65-70
    • Mondelli, M.U.1    Silini, E.2
  • 13
    • 84890180372 scopus 로고    scopus 로고
    • Advances in the management of hepatitis C
    • Croagh C.M., Lubel J. Advances in the management of hepatitis C. Intern Med J 2013, 43:1265-1271.
    • (2013) Intern Med J , vol.43 , pp. 1265-1271
    • Croagh, C.M.1    Lubel, J.2
  • 14
    • 80051676859 scopus 로고    scopus 로고
    • Global epidemiology of hepatitis B and hepatitis C in people who inject drugs: results of systematic reviews
    • Nelson P.K., Mathers B.M., Cowie B., Hagan H., Des Jarlais D., Horyniak D., et al. Global epidemiology of hepatitis B and hepatitis C in people who inject drugs: results of systematic reviews. Lancet 2011, 378:571-583.
    • (2011) Lancet , vol.378 , pp. 571-583
    • Nelson, P.K.1    Mathers, B.M.2    Cowie, B.3    Hagan, H.4    Des Jarlais, D.5    Horyniak, D.6
  • 15
    • 84455182283 scopus 로고    scopus 로고
    • What is killing people with hepatitis C virus infection?
    • Grebely J., Dore G.J. What is killing people with hepatitis C virus infection?. Semin Liver Dis 2011, 31:331-339.
    • (2011) Semin Liver Dis , vol.31 , pp. 331-339
    • Grebely, J.1    Dore, G.J.2
  • 17
    • 84876471176 scopus 로고    scopus 로고
    • Systematic review: Asian patients with chronic hepatitis C infection
    • Nguyen L.H., Nguyen M.H. Systematic review: Asian patients with chronic hepatitis C infection. Aliment Pharmacol Ther 2013, 37:921-936.
    • (2013) Aliment Pharmacol Ther , vol.37 , pp. 921-936
    • Nguyen, L.H.1    Nguyen, M.H.2
  • 19
    • 84882774764 scopus 로고    scopus 로고
    • Sequencing assays for failed genotyping with the versant hepatitis C virus genotype assay (lipa), version 2.0
    • Larrat S., Poveda J.D., Coudret C., Fusillier K., Magnat N., Signori-Schmuck A., et al. Sequencing assays for failed genotyping with the versant hepatitis C virus genotype assay (lipa), version 2.0. JClin Microbiol 2013, 51:2815-2821.
    • (2013) JClin Microbiol , vol.51 , pp. 2815-2821
    • Larrat, S.1    Poveda, J.D.2    Coudret, C.3    Fusillier, K.4    Magnat, N.5    Signori-Schmuck, A.6
  • 20
    • 84877799681 scopus 로고    scopus 로고
    • Validation of a solid-phase electrochemical array for genotyping hepatitis C virus
    • Sam S.S., Steinmetz H.B., Tsongalis G.J., Tafe L.J., Lefferts J.A. Validation of a solid-phase electrochemical array for genotyping hepatitis C virus. Exp Mol Pathol 2013, 95:18-22.
    • (2013) Exp Mol Pathol , vol.95 , pp. 18-22
    • Sam, S.S.1    Steinmetz, H.B.2    Tsongalis, G.J.3    Tafe, L.J.4    Lefferts, J.A.5
  • 21
    • 0025742836 scopus 로고
    • Typing of hepatitis C virus genomes by restriction fragment length polymorphism
    • Nakao T., Enomoto N., Takada N., Takada A., Date T. Typing of hepatitis C virus genomes by restriction fragment length polymorphism. JGen Virol 1991, 72(Pt 9):2105-2112.
    • (1991) JGen Virol , vol.72 , pp. 2105-2112
    • Nakao, T.1    Enomoto, N.2    Takada, N.3    Takada, A.4    Date, T.5
  • 22
    • 22044441155 scopus 로고    scopus 로고
    • Molecular methods of hepatitis C genotyping
    • Weck K. Molecular methods of hepatitis C genotyping. Exp Rev Mol Diagn 2005, 5:507-520.
    • (2005) Exp Rev Mol Diagn , vol.5 , pp. 507-520
    • Weck, K.1
  • 23
    • 84894707183 scopus 로고    scopus 로고
    • Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource
    • Smith D.B., Bukh J., Kuiken C., Muerhoff A.S., Rice C.M., Stapleton J.T., et al. Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource. Hepatology 2014, 59:318-327.
    • (2014) Hepatology , vol.59 , pp. 318-327
    • Smith, D.B.1    Bukh, J.2    Kuiken, C.3    Muerhoff, A.S.4    Rice, C.M.5    Stapleton, J.T.6
  • 24
    • 20844441405 scopus 로고    scopus 로고
    • Comparison of hepatitis C virus NS5B and 5' noncoding gene sequencing methods in a multicenter study
    • Laperche S., Lunel F., Izopet J., Alain S., Dény P., Duverlie G., et al. Comparison of hepatitis C virus NS5B and 5' noncoding gene sequencing methods in a multicenter study. JClin Microbiol 2005, 43:733-739.
    • (2005) JClin Microbiol , vol.43 , pp. 733-739
    • Laperche, S.1    Lunel, F.2    Izopet, J.3    Alain, S.4    Dény, P.5    Duverlie, G.6
  • 25
    • 84855544169 scopus 로고    scopus 로고
    • An updated analysis of hepatitis C virus genotypes and subtypes based on the complete coding region
    • Nakano T., Lau G.M., Sugiyama M., Mizokami M. An updated analysis of hepatitis C virus genotypes and subtypes based on the complete coding region. Liver Int 2012, 32:339-345.
    • (2012) Liver Int , vol.32 , pp. 339-345
    • Nakano, T.1    Lau, G.M.2    Sugiyama, M.3    Mizokami, M.4
  • 26
    • 84893579968 scopus 로고    scopus 로고
    • Hepatitis C virus diversification in Argentina: comparative analysis between the large city of Buenos Aires and the small rural town of O'Brien
    • Golemba M.D., Culasso A.C., Villamil F.G., Bare P., Gadano A., Ridruejo E., et al. Hepatitis C virus diversification in Argentina: comparative analysis between the large city of Buenos Aires and the small rural town of O'Brien. PloS One 2013, 8:e84007.
    • (2013) PloS One , vol.8 , pp. e84007
    • Golemba, M.D.1    Culasso, A.C.2    Villamil, F.G.3    Bare, P.4    Gadano, A.5    Ridruejo, E.6
  • 27
    • 80053442210 scopus 로고    scopus 로고
    • Comparative performance evaluation of hepatitis C virus genotyping based on the 5' untranslated region versus partial sequencing of the NS5B region of Brazilian patients with chronic hepatitis C
    • Nakatani S.M., Santos C.A., Riediger I.N., Krieger M.A., Duarte C.A., do Carmo Debur M., et al. Comparative performance evaluation of hepatitis C virus genotyping based on the 5' untranslated region versus partial sequencing of the NS5B region of Brazilian patients with chronic hepatitis C. Virol J 2011, 8:459.
    • (2011) Virol J , vol.8 , pp. 459
    • Nakatani, S.M.1    Santos, C.A.2    Riediger, I.N.3    Krieger, M.A.4    Duarte, C.A.5    do Carmo Debur, M.6
  • 28
    • 84890529532 scopus 로고    scopus 로고
    • Hepatitis C virus NS5B sequence-based genotyping analysis of patients from the Sharkia governorate
    • Elsadek Fakhr A., Pourkarim M.R., Maes P., Atta A.H., Marei A., Azab M., et al. Hepatitis C virus NS5B sequence-based genotyping analysis of patients from the Sharkia governorate. Egypt Hepat Monthly 2013, 13:e12706.
    • (2013) Egypt Hepat Monthly , vol.13 , pp. e12706
    • Elsadek Fakhr, A.1    Pourkarim, M.R.2    Maes, P.3    Atta, A.H.4    Marei, A.5    Azab, M.6
  • 29
    • 0030477741 scopus 로고    scopus 로고
    • Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity
    • Simmonds P., Mellor J., Sakuldamrongpanich T., Nuchaprayoon C., Tanprasert S., Holmes E.C., et al. Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity. JGen Virol 1996, 77(Pt 12):3013-3024.
    • (1996) JGen Virol , vol.77 , pp. 3013-3024
    • Simmonds, P.1    Mellor, J.2    Sakuldamrongpanich, T.3    Nuchaprayoon, C.4    Tanprasert, S.5    Holmes, E.C.6
  • 30
    • 33745136792 scopus 로고    scopus 로고
    • Analysis of the 5' noncoding region versus the NS5B region in genotyping hepatitis C virus isolates from blood donors in France
    • Cantaloube J.F., Laperche S., Gallian P., Bouchardeau F., de Lamballerie X., de Micco P. Analysis of the 5' noncoding region versus the NS5B region in genotyping hepatitis C virus isolates from blood donors in France. JClin Microbiol 2006, 44:2051-2056.
    • (2006) JClin Microbiol , vol.44 , pp. 2051-2056
    • Cantaloube, J.F.1    Laperche, S.2    Gallian, P.3    Bouchardeau, F.4    de Lamballerie, X.5    de Micco, P.6
  • 32
    • 77955439878 scopus 로고    scopus 로고
    • Development and evaluation of an automated hepatitis C virus NS5B sequence-based subtyping assay
    • Koletzki D., Dumont S., Vermeiren H., Fevery B., De Smet P., Stuyver L.J. Development and evaluation of an automated hepatitis C virus NS5B sequence-based subtyping assay. Clin Chem Lab Med 2010, 48:1095-1102.
    • (2010) Clin Chem Lab Med , vol.48 , pp. 1095-1102
    • Koletzki, D.1    Dumont, S.2    Vermeiren, H.3    Fevery, B.4    De Smet, P.5    Stuyver, L.J.6
  • 33
    • 34247186434 scopus 로고    scopus 로고
    • Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to c/e1 and 5' untranslated region sequences
    • Murphy D.G., Willems B., Deschenes M., Hilzenrat N., Mousseau R., Sabbah S. Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to c/e1 and 5' untranslated region sequences. JClin Microbiol 2007, 45:1102-1112.
    • (2007) JClin Microbiol , vol.45 , pp. 1102-1112
    • Murphy, D.G.1    Willems, B.2    Deschenes, M.3    Hilzenrat, N.4    Mousseau, R.5    Sabbah, S.6
  • 35
    • 84914150658 scopus 로고    scopus 로고
    • Global epidemiology and genotype distribution of the hepatitis C virus infection
    • Gower E., Estes C., Blach S., Razavi-Shearer K., Razavi H. Global epidemiology and genotype distribution of the hepatitis C virus infection. JHepatol 2014, 61:S45-S57.
    • (2014) JHepatol , vol.61 , pp. S45-S57
    • Gower, E.1    Estes, C.2    Blach, S.3    Razavi-Shearer, K.4    Razavi, H.5
  • 37
    • 0034120427 scopus 로고    scopus 로고
    • Clinical significance of hepatitis C virus genotypes
    • Zein N.N. Clinical significance of hepatitis C virus genotypes. Clin Microbiol Rev 2000, 13:223-235.
    • (2000) Clin Microbiol Rev , vol.13 , pp. 223-235
    • Zein, N.N.1
  • 38
    • 37849187664 scopus 로고    scopus 로고
    • Hepatitis C virus 1b(ii) infection and development of chronic hepatitis, liver cirrhosis and hepatocellular carcinoma: a case-control study in Japan
    • Tanaka H., Tsukuma H., Yamano H., Okubo Y., Inoue A., Kasahara A., et al. Hepatitis C virus 1b(ii) infection and development of chronic hepatitis, liver cirrhosis and hepatocellular carcinoma: a case-control study in Japan. JEpidemiol 1998, 8:244-249.
    • (1998) JEpidemiol , vol.8 , pp. 244-249
    • Tanaka, H.1    Tsukuma, H.2    Yamano, H.3    Okubo, Y.4    Inoue, A.5    Kasahara, A.6
  • 39
    • 0038359448 scopus 로고    scopus 로고
    • The influence of viral genotypes and rejection episodes on the recurrence of hepatitis C after liver transplantation
    • Sugo H., Balderson G.A., Crawford D.H., Fawcett J., Lynch S.V., Strong R.W., et al. The influence of viral genotypes and rejection episodes on the recurrence of hepatitis C after liver transplantation. Surg Today 2003, 33:421-425.
    • (2003) Surg Today , vol.33 , pp. 421-425
    • Sugo, H.1    Balderson, G.A.2    Crawford, D.H.3    Fawcett, J.4    Lynch, S.V.5    Strong, R.W.6
  • 40
    • 0033372976 scopus 로고    scopus 로고
    • Correlation of clinicopathologic features of resected hepatocellular carcinoma with hepatitis C virus genotype
    • Murase J., Kubo S., Nishiguchi S., Hirohashi K., Shuto T., Ikebe T., et al. Correlation of clinicopathologic features of resected hepatocellular carcinoma with hepatitis C virus genotype. Jpn J Cancer Res 1999, 90:1293-1300.
    • (1999) Jpn J Cancer Res , vol.90 , pp. 1293-1300
    • Murase, J.1    Kubo, S.2    Nishiguchi, S.3    Hirohashi, K.4    Shuto, T.5    Ikebe, T.6
  • 41
    • 37749010468 scopus 로고    scopus 로고
    • Distinct hepatitis C virus core and f protein quasispecies in tumoral and nontumoral hepatocytes isolated via microdissection
    • Sobesky R., Feray C., Rimlinger F., Derian N., Dos Santos A., Roque-Afonso A.M., et al. Distinct hepatitis C virus core and f protein quasispecies in tumoral and nontumoral hepatocytes isolated via microdissection. Hepatology 2007, 46:1704-1712.
    • (2007) Hepatology , vol.46 , pp. 1704-1712
    • Sobesky, R.1    Feray, C.2    Rimlinger, F.3    Derian, N.4    Dos Santos, A.5    Roque-Afonso, A.M.6
  • 43
    • 84879778430 scopus 로고    scopus 로고
    • Apolipoprotein E mediates attachment of clinical hepatitis C virus to hepatocytes by binding to cell surface heparan sulfate proteoglycan receptors
    • Jiang J., Wu X., Tang H., Luo G. Apolipoprotein E mediates attachment of clinical hepatitis C virus to hepatocytes by binding to cell surface heparan sulfate proteoglycan receptors. PloS One 2013, 8:e67982.
    • (2013) PloS One , vol.8 , pp. e67982
    • Jiang, J.1    Wu, X.2    Tang, H.3    Luo, G.4
  • 44
    • 84906596715 scopus 로고    scopus 로고
    • Distribution pattern of hepatitis C virus genotypes and correlation with viral load and risk factors in chronic positive patients
    • Petruzziello A., Coppola N., Loquercio G., Marigliano S., Giordano M., Azzaro R., et al. Distribution pattern of hepatitis C virus genotypes and correlation with viral load and risk factors in chronic positive patients. Intervirology 2014, 57:311-318.
    • (2014) Intervirology , vol.57 , pp. 311-318
    • Petruzziello, A.1    Coppola, N.2    Loquercio, G.3    Marigliano, S.4    Giordano, M.5    Azzaro, R.6
  • 47
    • 33750828434 scopus 로고    scopus 로고
    • Evidence of recombination in quasispecies populations of a hepatitis C virus patient undergoing anti-viral therapy
    • Moreno M.P., Casane D., Lopez L., Cristina J. Evidence of recombination in quasispecies populations of a hepatitis C virus patient undergoing anti-viral therapy. Virol J 2006, 3:87.
    • (2006) Virol J , vol.3 , pp. 87
    • Moreno, M.P.1    Casane, D.2    Lopez, L.3    Cristina, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.