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Volumn 48, Issue 8, 2010, Pages 1095-1102

Development and evaluation of an automated hepatitis C virus NS5B sequence-based subtyping assay

Author keywords

hepatitis C virus; NS5B; sequencing; subtype

Indexed keywords

NONSTRUCTURAL PROTEIN 5B; VIRUS RNA;

EID: 77955439878     PISSN: 14346621     EISSN: 14374331     Source Type: Journal    
DOI: 10.1515/CCLM.2010.236     Document Type: Article
Times cited : (23)

References (41)
  • 1
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 1989;244:359-362
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 2
    • 25844523297 scopus 로고    scopus 로고
    • Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes
    • Simmonds P, Bukh J, Combet C, Deleage G, Enomoto N, Feinstone S, et. al. Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 2005;42:962-973
    • (2005) Hepatology , vol.42 , pp. 962-973
    • Simmonds, P.1    Bukh, J.2    Combet, C.3    Deleage, G.4    Enomoto, N.5    Feinstone, S.6
  • 3
    • 61549118827 scopus 로고    scopus 로고
    • Nomenclature and numbering of the hepatitis C virus
    • Kuiken C, Simmonds P. Nomenclature and numbering of the hepatitis C virus. Method Mol Biol 2009;510:33-53.
    • (2009) Method Mol. Biol. , vol.510 , pp. 33-53
    • Kuiken, C.1    Simmonds, P.2
  • 4
    • 2942635076 scopus 로고    scopus 로고
    • Differences in epidemiology liver disease and treatment response among HCV genotypes
    • Hadziyannis SJ, Koskinas JS. Differences in epidemiology, liver disease and treatment response among HCV genotypes. Hepatol Res 2004;29:129-135
    • (2004) Hepatol. Res. , vol.29 , pp. 129-135
    • Hadziyannis, S.J.1    Koskinas, J.S.2
  • 5
    • 0035934568 scopus 로고    scopus 로고
    • Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: A randomised trial
    • Manns MP, McHutchison JG, Gordon SC, Rustgi VK, Shiffman M, Reindollar R, et. al. Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: a randomised trial. Lancet 2001;358: 958-965
    • (2001) Lancet. , vol.358 , pp. 958-965
    • Manns, M.P.1    McHutchison, J.G.2    Gordon, S.C.3    Rustgi, V.K.4    Shiffman, M.5    Reindollar, R.6
  • 6
    • 0037784027 scopus 로고    scopus 로고
    • Mechanisms of antiviral treatment efficacy and failure in chronic hepatitis C
    • Pawlotsky JM. Mechanisms of antiviral treatment efficacy and failure in chronic hepatitis C. Antiviral Res 2003;59:1-11.
    • (2003) Antiviral. Res. , vol.59 , pp. 1-11
    • Pawlotsky, J.M.1
  • 7
    • 34247594930 scopus 로고    scopus 로고
    • Dynamic hepatitis C virus genotypic and phenotypic changes in patients treated with the protease inhibitor telaprevir
    • Sarrazin C, Kieffer TL, Bartels D, Hanzelka B, Muh U, Welker M, et. al. Dynamic hepatitis C virus genotypic and phenotypic changes in patients treated with the protease inhibitor telaprevir. Gastroenterology 2007;132:1767-1777
    • (2007) Gastroenterology , vol.132 , pp. 1767-1777
    • Sarrazin, C.1    Kieffer, T.L.2    Bartels, D.3    Hanzelka, B.4    Muh, U.5    Welker, M.6
  • 8
    • 0027522145 scopus 로고
    • Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region
    • Simmonds P, Holmes EC, Cha TA, Chan SW, McOmish F, Irvine B, et. al. Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol 1993;74(Pt 11):2391-2399
    • (1993) J. Gen. Virol. , vol.74 , Issue.PART 11 , pp. 2391-2399
    • Simmonds, P.1    Holmes, E.C.2    Cha, T.A.3    Chan, S.W.4    McOmish, F.5    Irvine, B.6
  • 9
    • 0028061454 scopus 로고
    • Classification of hepatitis C viruses based on phylogenetic analysis of the envelope 1 and nonstructural 5B regions and identification of five additional subtypes
    • USA
    • Stuyver L, van Arnhem W, Wyseur A, Hernandez F, Delaporte E, Maertens G. Classification of hepatitis C viruses based on phylogenetic analysis of the envelope 1 and nonstructural 5B regions and identification of five additional subtypes. Proc Natl Acad Sci USA 1994;91:10134-10138
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 10134-10138
    • Stuyver, L.1    Van Arnhem, W.2    Wyseur, A.3    Hernandez, F.4    Delaporte, E.5    Maertens, G.6
  • 11
    • 0026563204 scopus 로고
    • Typing hepatitis C virus by polymerase chain reaction with type-specific primers: Application to clinical surveys and tracing infectious sources
    • Okamoto H, Sugiyama Y, Okada S, Kurai K, Akahane Y, Sugai Y, et. al. Typing hepatitis C virus by polymerase chain reaction with type-specific primers: application to clinical surveys and tracing infectious sources. J Gen Virol 1992;73:673-679
    • (1992) J. Gen. Virol. , vol.73 , pp. 673-679
    • Okamoto, H.1    Sugiyama, Y.2    Okada, S.3    Kurai, K.4    Akahane, Y.5    Sugai, Y.6
  • 12
    • 0025742836 scopus 로고
    • Typing of hepatitis C virus genomes by restriction fragment length polymorphism
    • Nakao T, Enomoto N, Takada N, Takada A, Date T. Typing of hepatitis C virus genomes by restriction fragment length polymorphism. J Gen Virol 1991;72:2105-2112
    • (1991) J. Gen. Virol. , vol.72 , pp. 2105-2112
    • Nakao, T.1    Enomoto, N.2    Takada, N.3    Takada, A.4    Date, T.5
  • 14
    • 0033883640 scopus 로고    scopus 로고
    • Comparison and application of a novel genotyping method semiautomated primer-specific and mispair extension analysis and four other genotyping assays for detection of hepatitis C virus mixed-genotype infections
    • Hu YW, Balaskas E, Furione M, Yen PH, Kessler G, Scalia V, et. al. Comparison and application of a novel genotyping method, semiautomated primer-specific and mispair extension analysis, and four other genotyping assays for detection of hepatitis C virus mixed-genotype infections. J Clin Microbiol 2000;38: 2807-2813
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 2807-2813
    • Hu, Y.W.1    Balaskas, E.2    Furione, M.3    Yen, P.H.4    Kessler, G.5    Scalia, V.6
  • 15
    • 0036259893 scopus 로고    scopus 로고
    • Genotyping of hepatitis C virus types 1 2 3 and 4 by a one-step LightCycler method using three different pairs of hybridization probes
    • Schroter M, Zollner B, Schafer P, Landt O, Lass U, Laufs R, et. al. Genotyping of hepatitis C virus types 1, 2, 3, and 4 by a one-step LightCycler method using three different pairs of hybridization probes. J Clin Microbiol 2002;40:2046-2050
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2046-2050
    • Schroter, M.1    Zollner, B.2    Schafer, P.3    Landt, O.4    Lass, U.5    Laufs, R.6
  • 16
    • 0028818807 scopus 로고
    • Evaluation of a novel serotyping system for hepatitis C virus: strong correlation with standard genotyping methodologies
    • Dixit V, Quan S, Martin P, Larson D, Brezina M, DiNello R, et. al. Evaluation of a novel serotyping system for hepatitis C virus: strong correlation with standard genotyping methodologies. J Clin Microbiol 1995;33:2978-2983
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2978-2983
    • Dixit, V.1    Quan, S.2    Martin, P.3    Larson, D.4    Brezina, M.5    DiNello, R.6
  • 18
    • 0034189760 scopus 로고    scopus 로고
    • A multi-site study for detection of the factor V Leiden mutation from genomic DNA using a homogeneous invader microtiter plate fluorescence resonance energy transfer FRET assay
    • Ledford M, Friedman KD, Hessner MJ, Moehlenkamp C, Williams TM, Larson RS. A multi-site study for detection of the factor V (Leiden) mutation from genomic DNA using a homogeneous invader microtiter plate fluorescence resonance energy transfer (FRET) assay. J Mol Diagn 2000;2:97-104.
    • (2000) J. Mol. Diagn. , vol.2 , pp. 97-104
    • Ledford, M.1    Friedman, K.D.2    Hessner, M.J.3    Moehlenkamp, C.4    Williams, T.M.5    Larson, R.S.6
  • 19
    • 0028807064 scopus 로고
    • Hepatitis C virus genotyping by means of 59-UR/core line probe assays and molecular analysis of untypeable samples
    • Stuyver L, Wyseur A, van Arnhem W, Lunel F, Laurent-Puig P, Pawlotsky JM, et. al. Hepatitis C virus genotyping by means of 59-UR/core line probe assays and molecular analysis of untypeable samples. Virus Res 1995;38:137-157
    • (1995) Virus. Res. , vol.38 , pp. 137-157
    • Stuyver, L.1    Wyseur, A.2    Van Arnhem, W.3    Lunel, F.4    Laurent-Puig, P.5    Pawlotsky, J.M.6
  • 20
    • 0002756432 scopus 로고    scopus 로고
    • Genotypes and genetic variation of hepatitis C virus
    • Harrison TJ, Zuckerman AJ, editors. Chichester, England: Wiley
    • Maertens G, Stuyver L. Genotypes and genetic variation of hepatitis C virus. In: Harrison TJ, Zuckerman AJ, editors. The molecular medicine of viral hepatitis. Chichester, England: Wiley, 1997:182-233.
    • (1997) The Molecular Medicine of Viral Hepatitis , pp. 182-233
    • Maertens, G.1    Stuyver, L.2
  • 22
    • 0028218513 scopus 로고
    • Identification of genotypes of hepatitis C virus by sequence comparisons in the core E1 and NS-5 regions
    • Simmonds P, Smith DB, McOmish F, Yap PL, Kolberg J, Urdea MS, et. al. Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions. J Gen Virol 1994;75(Pt 5):1053-1061
    • (1994) J. Gen. Virol. , vol.75 , Issue.5 , pp. 1053-1061
    • Simmonds, P.1    Smith, D.B.2    McOmish, F.3    Yap, P.L.4    Kolberg, J.5    Urdea, M.S.6
  • 23
    • 33847102310 scopus 로고    scopus 로고
    • Determination of the hepatitis C virus subtype: comparison of sequencing and reverse hybridization assays
    • Stelzl E, van der Meer C, Gouw R, Beld M, Grahovac M, Marth E, et. al. Determination of the hepatitis C virus subtype: comparison of sequencing and reverse hybridization assays. Clin Chem Lab Med 2007;45:167-170
    • (2007) Clin. Chem. Lab. Med. , vol.45 , pp. 167-170
    • Stelzl, E.1    Van Der Meer, C.2    Gouw, R.3    Beld, M.4    Grahovac, M.5    Marth, E.6
  • 24
    • 0027968068 scopus 로고
    • Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res 1994;22:4673-4680
    • (1994) Nucleic. Acid. Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3    Clustal, W.4
  • 26
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis MEGA software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007;24:1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 27
    • 0032547944 scopus 로고    scopus 로고
    • Interferon alfa-2b alone or in combination with ribavirin for the treatment of relapse of chronic hepatitis C
    • International Hepatitis Interventional Therapy Group
    • Davis GL, Esteban-Mur R, Rustgi V, Hoefs J, Gordon SC, Trepo C, et. al. Interferon alfa-2b alone or in combination with ribavirin for the treatment of relapse of chronic hepatitis C. International Hepatitis Interventional Therapy Group. N Engl J Med 1998;339:1493-1499
    • (1998) N Engl J. Med. , vol.339 , pp. 1493-1499
    • Davis, G.L.1    Esteban-Mur, R.2    Rustgi, V.3    Hoefs, J.4    Gordon, S.C.5    Trepo, C.6
  • 28
    • 0031891408 scopus 로고    scopus 로고
    • Baseline level and early suppression of serum HCV RNA for predicting sustained complete response to alpha-interferon therapy
    • Izopet J, Payen JL, Alric L, Sandres K, Charlet JP, Vinel JP, et. al. Baseline level and early suppression of serum HCV RNA for predicting sustained complete response to alpha-interferon therapy. J Med Virol 1998;54:86-91.
    • (1998) J. Med. Virol. , vol.54 , pp. 86-91
    • Izopet, J.1    Payen, J.L.2    Alric, L.3    Sandres, K.4    Charlet, J.P.5    Vinel, J.P.6
  • 29
    • 0032547938 scopus 로고    scopus 로고
    • Interferon alfa-2b alone or in combination with ribavirin as initial treatment for chronic hepatitis C
    • Hepatitis Interventional Therapy Group
    • McHutchison JG, Gordon SC, Schiff ER, Shiffman ML, Lee WM, Rustgi VK, et. al. Interferon alfa-2b alone or in combination with ribavirin as initial treatment for chronic hepatitis C. Hepatitis Interventional Therapy Group. N Engl J Med 1998; 339:1485-1492
    • (1998) N Engl. J. Med. , vol.339 , pp. 1485-1492
    • McHutchison, J.G.1    Gordon, S.C.2    Schiff, E.R.3    Shiffman, M.L.4    Lee, W.M.5    Rustgi, V.K.6
  • 30
    • 0033965331 scopus 로고    scopus 로고
    • Is an a la carte combination interferon alfa-2b plus ribavirin regimen possible for the first line treatment in patients with chronic hepatitis C
    • The ALGOVIRC Project Group
    • Poynard T, McHutchison J, Goodman Z, Ling MH, Albrecht J. Is an "a la carte'' combination interferon alfa-2b plus ribavirin regimen possible for the first line treatment in patients with chronic hepatitis C? The ALGOVIRC Project Group. Hepatology 2000;31:211-218
    • (2000) Hepatology , vol.31 , pp. 211-218
    • Poynard, T.1    McHutchison, J.2    Goodman, Z.3    Ling, M.H.4    Albrecht, J.5
  • 31
    • 7444256169 scopus 로고    scopus 로고
    • Genetic diversity and evolution of hepatitis C virus - 15 years on
    • Simmonds P. Genetic diversity and evolution of hepatitis C virus - 15 years on. J Gen Virol 2004;85:3173-3188
    • (2004) J. Gen. Virol. , vol.85 , pp. 3173-3188
    • Simmonds, P.1
  • 33
    • 0037388634 scopus 로고    scopus 로고
    • Clinical evaluation of two methods for genotyping hepatitis C virus based on analysis of the 59 noncoding region
    • Nolte FS, Green AM, Fiebelkorn KR, Caliendo AM, Sturchio C, Grunwald A, et. al. Clinical evaluation of two methods for genotyping hepatitis C virus based on analysis of the 59 noncoding region. J Clin Microbiol 2003;41:1558-1564
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1558-1564
    • Nolte, F.S.1    Green, A.M.2    Fiebelkorn, K.R.3    Caliendo, A.M.4    Sturchio, C.5    Grunwald, A.6
  • 34
    • 77955451904 scopus 로고    scopus 로고
    • Development of an integrated platform to detect drug resistance mutations in the non-structural protein region of the hepatitis C virus genotypes 1 2 3 and 4
    • Koletzki D, Dumont S, Fevery B, De Smet P, Vermeiren H, Stuyver LJ. Development of an integrated platform to detect drug resistance mutations in the non-structural protein region of the hepatitis C virus genotypes 1, 2, 3, and 4. Rev Antivir Ther 2008;5:23.
    • (2008) Rev. Antivir. Ther. , vol.5 , pp. 23
    • Koletzki, D.1    Dumont, S.2    Fevery, B.3    De Smet, P.4    Vermeiren, H.5    Stuyver, L.J.6
  • 35
    • 0036702384 scopus 로고    scopus 로고
    • Qualitative detection of hepatitis C virus RNA: Comparison of analytical sensitivity clinical performance and workflow of the Cobas Amplicor HCV test version 2.0 and the HCV RNA transcription-mediated amplification qualitative assay
    • Krajden M, Ziermann R, Khan A, Mak A, Leung K, Hendricks D, et. al. Qualitative detection of hepatitis C virus RNA: comparison of analytical sensitivity, clinical performance, and workflow of the Cobas Amplicor HCV test version 2.0 and the HCV RNA transcription-mediated amplification qualitative assay. J Clin Microbiol 2002;40:2903-2907
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2903-2907
    • Krajden, M.1    Ziermann, R.2    Khan, A.3    Mak, A.4    Leung, K.5    Hendricks, D.6
  • 36
    • 0036708295 scopus 로고    scopus 로고
    • Hepatitis C virus genotyping: Interrogation of the 59 untranslated region cannot accurately distinguish genotypes 1a and 1b
    • Chen Z, Weck KE. Hepatitis C virus genotyping: interrogation of the 59 untranslated region cannot accurately distinguish genotypes 1a and 1b. J Clin Microbiol 2002;40:3127-3134
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3127-3134
    • Chen, Z.1    Weck, K.E.2
  • 37
    • 20844441405 scopus 로고    scopus 로고
    • Comparison of hepatitis C virus NS5b and 59 noncoding gene sequencing methods in a multicenter study
    • Laperche S, Lunel F, Izopet J, Alain S, Deny P, Duverlie G, et. al. Comparison of hepatitis C virus NS5b and 59 noncoding gene sequencing methods in a multicenter study. J Clin Microbiol 2005;43:733-739
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 733-739
    • Laperche, S.1    Lunel, F.2    Izopet, J.3    Alain, S.4    Deny, P.5    Duverlie, G.6
  • 38
    • 0028869799 scopus 로고
    • Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States
    • Lau JY, Mizokami M, Kolberg JA, Davis GL, Prescott LE, Ohno T, et. al. Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States. J Infect Dis 1995;171:281-289
    • (1995) J. Infect. Dis. , vol.171 , pp. 281-289
    • Lau, J.Y.1    Mizokami, M.2    Kolberg, J.A.3    Davis, G.L.4    Prescott, L.E.5    Ohno, T.6
  • 39
    • 38149136310 scopus 로고    scopus 로고
    • Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 59 noncoding and nonstructural 5b genomic regions
    • Martro E, Gonzalez V, Buckton AJ, Saludes V, Fernandez G, Matas L, et. al. Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 59 noncoding and nonstructural 5b genomic regions. J Clin Microbiol 2008;46:192-197
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 192-197
    • Martro, E.1    Gonzalez, V.2    Buckton, A.J.3    Saludes, V.4    Fernandez, G.5    Matas, L.6
  • 41
    • 33846209513 scopus 로고    scopus 로고
    • Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: The 59 untranslated region UTR fails to classify subtypes
    • Hraber PT, Fischer W, Bruno WJ, Leitner T, Kuiken C. Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: The 59 untranslated region (UTR) fails to classify subtypes. Virol J 2006;3:103.
    • (2006) Virol. J. , vol.3 , pp. 103
    • Hraber, P.T.1    Fischer, W.2    Bruno, W.J.3    Leitner, T.4    Kuiken, C.5


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