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Volumn 48, Issue 11, 2010, Pages 3910-3917

Hepatitis C virus genotyping using an oligonucleotide microarray based on the NS5B sequence

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 5B; OLIGONUCLEOTIDE;

EID: 78049498155     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01265-10     Document Type: Article
Times cited : (16)

References (51)
  • 2
    • 33745136792 scopus 로고    scopus 로고
    • Analysis of the 5′ noncoding region versus the NS5b region in genotyping hepatitis C virus isolates from blood donors in France
    • Cantaloube, J. F., S. Laperche, P. Gallian, F. Bouchardeau, X. de Lamballerie, and P. de Micco. 2006. Analysis of the 5′ noncoding region versus the NS5b region in genotyping hepatitis C virus isolates from blood donors in France. J. Clin. Microbiol. 44:2051-2056.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 2051-2056
    • Cantaloube, J.F.1    Laperche, S.2    Gallian, P.3    Bouchardeau, F.4    De Lamballerie, X.5    De Micco, P.6
  • 3
    • 0036708295 scopus 로고    scopus 로고
    • Hepatitis C virus genotyping: Interrogation of the 5′ untranslated region cannot accurately distinguish genotypes 1a and 1b
    • Chen, Z., and K. E. Weck. 2002. Hepatitis C virus genotyping: interrogation of the 5′ untranslated region cannot accurately distinguish genotypes 1a and 1b. J. Clin. Microbiol. 40:3127-3134.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3127-3134
    • Chen, Z.1    Weck, K.E.2
  • 4
    • 77949514845 scopus 로고    scopus 로고
    • Hepatitis C virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice
    • Chevaliez, S., M. Bouvier-Alias, R. Brillet, and J. M. Pawlotsky. 2009. Hepatitis C virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice. PLoS One 4:e8209.
    • (2009) PLoS One , vol.4
    • Chevaliez, S.1    Bouvier-Alias, M.2    Brillet, R.3    Pawlotsky, J.M.4
  • 9
    • 51749084677 scopus 로고    scopus 로고
    • Chronic hepatitis C virus genotype 6 infection: Response to pegylated interferon and ribavirin
    • Fung, J., C. L. Lai, I. Hung, J. Young, C. Cheng, D. Wong, and M. F. Yuen. 2008. Chronic hepatitis C virus genotype 6 infection: response to pegylated interferon and ribavirin. J. Infect. Dis. 198:808-812.
    • (2008) J. Infect. Dis. , vol.198 , pp. 808-812
    • Fung, J.1    Lai, C.L.2    Hung, I.3    Young, J.4    Cheng, C.5    Wong, D.6    Yuen, M.F.7
  • 10
    • 0141992896 scopus 로고    scopus 로고
    • Evaluation of the TRUGENE HCV 5′NC genotyping kit with the new GeneLibrarian module 3.1.2 for genotyping of hepatitis C virus from clinical specimens
    • Germer, J. J., D. W. Majewski, M. Rosser, A. Thompson, P. S. Mitchell, T. F. Smith, S. Elagin, and J. D. Yao. 2003. Evaluation of the TRUGENE HCV 5′NC genotyping kit with the new GeneLibrarian module 3.1.2 for genotyping of hepatitis C virus from clinical specimens. J. Clin. Microbiol. 41:4855-4857.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4855-4857
    • Germer, J.J.1    Majewski, D.W.2    Rosser, M.3    Thompson, A.4    Mitchell, P.S.5    Smith, T.F.6    Elagin, S.7    Yao, J.D.8
  • 11
    • 2942635076 scopus 로고    scopus 로고
    • Differences in epidemiology, liver disease and treatment response among HCV genotypes
    • Hadziyannis, S. J., and J. S. Koskinas. 2004. Differences in epidemiology, liver disease and treatment response among HCV genotypes. Hepatol. Res. 29:129-135.
    • (2004) Hepatol. Res. , vol.29 , pp. 129-135
    • Hadziyannis, S.J.1    Koskinas, J.S.2
  • 12
    • 33846209513 scopus 로고    scopus 로고
    • Comparative analysis of hepatitis C virus phylogenies from coding and noncoding regions: The 5′ untranslated region (UTR) fails to classify subtypes
    • Hraber, P. T., W. Fischer, W. J. Bruno, T. Leitner, and C. Kuiken. 2006. Comparative analysis of hepatitis C virus phylogenies from coding and noncoding regions: the 5′ untranslated region (UTR) fails to classify subtypes. Virol. J. 3:103.
    • (2006) Virol. J. , vol.3 , pp. 103
    • Hraber, P.T.1    Fischer, W.2    Bruno, W.J.3    Leitner, T.4    Kuiken, C.5
  • 13
    • 34548758435 scopus 로고    scopus 로고
    • Telaprevir and pegylated interferon-alpha-2a inhibit wild-type and resistant genotype 1 hepatitis C virus replication in patients
    • DOI 10.1002/hep.21781
    • Kieffer, T. L., C. Sarrazin, J. S. Miller, M. W. Welker, N. Forestier, H. W. Reesink, A. D. Kwong, and S. Zeuzem. 2007. Telaprevir and pegylated interferon-alpha-2a inhibit wild-type and resistant genotype 1 hepatitis C virus replication in patients. Hepatology 46:631-639. (Pubitemid 47436107)
    • (2007) Hepatology , vol.46 , Issue.3 , pp. 631-639
    • Kieffer, T.L.1    Sarrazin, C.2    Miller, J.S.3    Welker, M.W.4    Forestier, N.5    Reesink, H.W.6    Kwong, A.D.7    Zeuzem, S.8
  • 14
    • 38549138983 scopus 로고    scopus 로고
    • The hepatitis C sequence database in Los Alamos
    • DOI 10.1093/nar/gkm962
    • Kuiken, C., P. Hraber, J. Thurmond, and K. Yusim. 2008. The hepatitis C sequence database in Los Alamos. Nucleic Acids Res. 36:D512-D516. (Pubitemid 351149775)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Kuiken, C.1    Hraber, P.2    Thurmond, J.3    Yusim, K.4
  • 19
    • 2142826560 scopus 로고    scopus 로고
    • Hepatitis C virus genotype 5: Epidemiological characteristics and sensitivity to combination therapy with interferon-alpha plus ribavirin
    • Legrand-Abravanel, F., K. Sandres-Saune, K. Barange, L. Alric, J. Moreau, P. Desmorat, J. P. Vinel, and J. Izopet. 2004. Hepatitis C virus genotype 5: epidemiological characteristics and sensitivity to combination therapy with interferon-alpha plus ribavirin. J. Infect. Dis. 189:1397-1400.
    • (2004) J. Infect. Dis. , vol.189 , pp. 1397-1400
    • Legrand-Abravanel, F.1    Sandres-Saune, K.2    Barange, K.3    Alric, L.4    Moreau, J.5    Desmorat, P.6    Vinel, J.P.7    Izopet, J.8
  • 21
    • 33747797031 scopus 로고    scopus 로고
    • Treating viral hepatitis C: Efficacy, side effects, and complications
    • Manns, M. P., H. Wedemeyer, and M. Cornberg. 2006. Treating viral hepatitis C: efficacy, side effects, and complications. Gut 55:1350-1359.
    • (2006) Gut , vol.55 , pp. 1350-1359
    • Manns, M.P.1    Wedemeyer, H.2    Cornberg, M.3
  • 22
    • 72649088367 scopus 로고    scopus 로고
    • Clinical evaluation of a colorimetric oligonucleotide chip for genotyping hepatitis C virus
    • Mao, H., H. Zhang, J. Zhao, Z. Lu, G. Jin, S. Gu, H. Wang, and Y. Wang. 2010. Clinical evaluation of a colorimetric oligonucleotide chip for genotyping hepatitis C virus. Clin. Biochem. 43:214-219.
    • (2010) Clin. Biochem. , vol.43 , pp. 214-219
    • Mao, H.1    Zhang, H.2    Zhao, J.3    Lu, Z.4    Jin, G.5    Gu, S.6    Wang, H.7    Wang, Y.8
  • 23
    • 38149136310 scopus 로고    scopus 로고
    • Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 5′ noncoding and nonstructural 5b genomic regions
    • Martro, E., V. Gonzalez, A. J. Buckton, V. Saludes, G. Fernandez, L. Matas, R. Planas, and V. Ausina. 2008. Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 5′ noncoding and nonstructural 5b genomic regions. J. Clin. Microbiol. 46:192-197.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 192-197
    • Martro, E.1    Gonzalez, V.2    Buckton, A.J.3    Saludes, V.4    Fernandez, G.5    Matas, L.6    Planas, R.7    Ausina, V.8
  • 24
    • 66149128046 scopus 로고    scopus 로고
    • GT-1a or GT-1b subtype-specific resistance profiles for hepatitis C virus inhibitors telaprevir and HCV-796
    • McCown, M. F., S. Rajyaguru, S. Kular, N. Cammack, and I. Najera. 2009. GT-1a or GT-1b subtype-specific resistance profiles for hepatitis C virus inhibitors telaprevir and HCV-796. Antimicrob. Agents Chemother. 53:2129-2132.
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 2129-2132
    • McCown, M.F.1    Rajyaguru, S.2    Kular, S.3    Cammack, N.4    Najera, I.5
  • 27
    • 34247186434 scopus 로고    scopus 로고
    • Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to C/E1 and 5′ untranslated region sequences
    • Murphy, D. G., B. Willems, M. Deschenes, N. Hilzenrat, R. Mousseau, and S. Sabbah. 2007. Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to C/E1 and 5′ untranslated region sequences. J. Clin. Microbiol. 45:1102-1112.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 1102-1112
    • Murphy, D.G.1    Willems, B.2    Deschenes, M.3    Hilzenrat, N.4    Mousseau, R.5    Sabbah, S.6
  • 32
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 34
    • 73249152960 scopus 로고    scopus 로고
    • Development and clinical evaluation of a microarray for hepatitis C virus genotyping
    • Park, J. C., J. M. Kim, O. J. Kwon, K. R. Lee, Y. G. Chai, and H. B. Oh. 2010. Development and clinical evaluation of a microarray for hepatitis C virus genotyping. J. Virol. Methods 163:269-275.
    • (2010) J. Virol. Methods , vol.163 , pp. 269-275
    • Park, J.C.1    Kim, J.M.2    Kwon, O.J.3    Lee, K.R.4    Chai, Y.G.5    Oh, H.B.6
  • 35
    • 39049126397 scopus 로고    scopus 로고
    • Towards a better resolution of hepatitis C virus variants: CLIP sequencing of an HCV core fragment and automated assignment of genotypes and subtypes
    • Ross, R. S., S. Viazov, B. Wolters, and M. Roggendorf. 2008. Towards a better resolution of hepatitis C virus variants: CLIP sequencing of an HCV core fragment and automated assignment of genotypes and subtypes. J. Virol. Methods 148:25-33.
    • (2008) J. Virol. Methods , vol.148 , pp. 25-33
    • Ross, R.S.1    Viazov, S.2    Wolters, B.3    Roggendorf, M.4
  • 41
    • 75149151884 scopus 로고    scopus 로고
    • Resistance to direct antiviral agents in patients with hepatitis C virus infection
    • Sarrazin, C., and S. Zeuzem. 2010. Resistance to direct antiviral agents in patients with hepatitis C virus infection. Gastroenterology 138:447-462.
    • (2010) Gastroenterology , vol.138 , pp. 447-462
    • Sarrazin, C.1    Zeuzem, S.2
  • 42
    • 7444256169 scopus 로고    scopus 로고
    • Genetic diversity and evolution of hepatitis C virus - 15 years on
    • Simmonds, P. 2004. Genetic diversity and evolution of hepatitis C virus - 15 years on. J. Gen. Virol. 85:3173-3188.
    • (2004) J. Gen. Virol. , vol.85 , pp. 3173-3188
    • Simmonds, P.1
  • 44
    • 77949870919 scopus 로고    scopus 로고
    • Performance evaluation of the Abbott RealTime HCV Genotype II for hepatitis C virus genotyping
    • Sohn, Y. H., S. Y. Ko, M. H. Kim, and H. B. Oh. 2010. Performance evaluation of the Abbott RealTime HCV Genotype II for hepatitis C virus genotyping. Clin. Chem. Lab. Med. 48:469-474.
    • (2010) Clin. Chem. Lab. Med. , vol.48 , pp. 469-474
    • Sohn, Y.H.1    Ko, S.Y.2    Kim, M.H.3    Oh, H.B.4
  • 45
    • 0028061454 scopus 로고
    • Classification of hepatitis C viruses based on phylogenetic analysis of the envelope 1 and nonstructural 5B regions and identification of five additional subtypes
    • Stuyver, L., W. van Arnhem, A. Wyseur, F. Hernandez, E. Delaporte, and G. Maertens. 1994. Classification of hepatitis C viruses based on phylogenetic analysis of the envelope 1 and nonstructural 5B regions and identification of five additional subtypes. Proc. Natl. Acad. Sci. U. S. A. 91:10134-10138.
    • (1994) Proc. Natl. Acad. Sci. U. S. A. , vol.91 , pp. 10134-10138
    • Stuyver, L.1    Van Arnhem, W.2    Wyseur, A.3    Hernandez, F.4    Delaporte, E.5    Maertens, G.6
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 50
    • 22044441155 scopus 로고    scopus 로고
    • Molecular methods of hepatitis C genotyping
    • Weck, K. 2005. Molecular methods of hepatitis C genotyping. Expert Rev. Mol. Diagn. 5:507-520.
    • (2005) Expert Rev. Mol. Diagn. , vol.5 , pp. 507-520
    • Weck, K.1
  • 51
    • 33947425672 scopus 로고    scopus 로고
    • The effects of HCV infection and management on health-related quality of life
    • DOI 10.1002/hep.21565
    • Younossi, Z., J. Kallman, and J. Kincaid. 2007. The effects of HCV infection and management on health-related quality of life. Hepatology 45:806-816. (Pubitemid 46450632)
    • (2007) Hepatology , vol.45 , Issue.3 , pp. 806-816
    • Younossi, Z.1    Kallman, J.2    Kincaid, J.3


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