메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

GACT: A Genome build and Allele definition Conversion Tool for SNP imputation and meta-analysis in genetic association studies

Author keywords

Allele definition (nomenclature); Genome build; Genome wide association study (GWAS); Imputation; Meta analysis

Indexed keywords

ALLELE; ARTICLE; COHORT ANALYSIS; COMPUTER PROGRAM; FACTORIAL ANALYSIS; GENE FREQUENCY; GENETIC ASSOCIATION; GENETIC SCREENING; GENOME; GENOME ANALYSIS; GENOTYPE; INFORMATION PROCESSING; META ANALYSIS (TOPIC); PREDICTION; QUALITY CONTROL; SINGLE NUCLEOTIDE POLYMORPHISM; GENOMICS; HUMAN; PROCEDURES;

EID: 84907294937     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-610     Document Type: Article
Times cited : (6)

References (17)
  • 1
  • 2
    • 77958097816 scopus 로고    scopus 로고
    • Genome-wide significant associations for variants with minor allele frequency of 5% or less-an overview: a HuGE review
    • 20876667
    • Panagiotou OA, Evangelou E, Ioannidis JP. Genome-wide significant associations for variants with minor allele frequency of 5% or less-an overview: a HuGE review. Am J Epidemiol 2010, 172(8):869-889. 10.1093/aje/kwq234, 20876667.
    • (2010) Am J Epidemiol , vol.172 , Issue.8 , pp. 869-889
    • Panagiotou, O.A.1    Evangelou, E.2    Ioannidis, J.P.3
  • 4
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 3042601, 20981092
    • Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA, . Genomes Project C A map of human genome variation from population-scale sequencing. Nature 2010, 467(7319):1061-1073. 10.1038/nature09534, 3042601, 20981092, Genomes Project C.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1061-1073
    • Abecasis, G.R.1    Altshuler, D.2    Auton, A.3    Brooks, L.D.4    Durbin, R.M.5    Gibbs, R.A.6    Hurles, M.E.7    McVean, G.A.8
  • 5
    • 84863874689 scopus 로고    scopus 로고
    • Is 'forward' the same as 'plus'?...and other adventures in SNP allele nomenclature
    • 22658725
    • Nelson SC, Doheny KF, Laurie CC, Mirel DB. Is 'forward' the same as 'plus'?...and other adventures in SNP allele nomenclature. Trends Genet 2012, 28(8):361-363. 10.1016/j.tig.2012.05.002, 22658725.
    • (2012) Trends Genet , vol.28 , Issue.8 , pp. 361-363
    • Nelson, S.C.1    Doheny, K.F.2    Laurie, C.C.3    Mirel, D.B.4
  • 6
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • 20517342
    • Marchini J, Howie B. Genotype imputation for genome-wide association studies. Nat Rev Genet 2010, 11(7):499-511. 10.1038/nrg2796, 20517342.
    • (2010) Nat Rev Genet , vol.11 , Issue.7 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 8
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • 23269371
    • Delaneau O, Zagury JF, Marchini J. Improved whole-chromosome phasing for disease and population genetic studies. Nat Methods 2013, 10(1):5-6. 10.1038/nchembio.1414, 23269371.
    • (2013) Nat Methods , vol.10 , Issue.1 , pp. 5-6
    • Delaneau, O.1    Zagury, J.F.2    Marchini, J.3
  • 9
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • 2689936, 19543373
    • Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 2009, 5(6):e1000529. 10.1371/journal.pgen.1000529, 2689936, 19543373.
    • (2009) PLoS Genet , vol.5 , Issue.6 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 10
    • 78649508578 scopus 로고    scopus 로고
    • MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • 3175618, 21058334
    • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 2010, 34(8):816-834. 10.1002/gepi.20533, 3175618, 21058334.
    • (2010) Genet Epidemiol , vol.34 , Issue.8 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 11
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • 2265661, 17924348
    • Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet 2007, 81(5):1084-1097. 10.1086/521987, 2265661, 17924348.
    • (2007) Am J Hum Genet , vol.81 , Issue.5 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 13
    • 79957951017 scopus 로고    scopus 로고
    • Low-coverage sequencing: implications for design of complex trait association studies
    • 3106327, 21460063
    • Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR. Low-coverage sequencing: implications for design of complex trait association studies. Genome Res 2011, 21(6):940-951. 10.1101/gr.117259.110, 3106327, 21460063.
    • (2011) Genome Res , vol.21 , Issue.6 , pp. 940-951
    • Li, Y.1    Sidore, C.2    Kang, H.M.3    Boehnke, M.4    Abecasis, G.R.5
  • 14
    • 77952714079 scopus 로고    scopus 로고
    • GWAMA: software for genome-wide association meta-analysis
    • 2893603, 20509871
    • Magi R, Morris AP. GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288. 10.1186/1471-2105-11-288, 2893603, 20509871.
    • (2010) BMC Bioinformatics , vol.11 , pp. 288
    • Magi, R.1    Morris, A.P.2
  • 15
    • 77955894071 scopus 로고    scopus 로고
    • METAL: fast and efficient meta-analysis of genomewide association scans
    • 2922887, 20616382
    • Willer CJ, Li Y, Abecasis GR. METAL: fast and efficient meta-analysis of genomewide association scans. Bioinformatics 2010, 26(17):2190-2191. 10.1093/bioinformatics/btq340, 2922887, 20616382.
    • (2010) Bioinformatics , vol.26 , Issue.17 , pp. 2190-2191
    • Willer, C.J.1    Li, Y.2    Abecasis, G.R.3
  • 16
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip
    • 2688469, 19492015
    • Spencer CC, Su Z, Donnelly P, Marchini J. Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 2009, 5(5):e1000477. 10.1371/journal.pgen.1000477, 2688469, 19492015.
    • (2009) PLoS Genet , vol.5 , Issue.5 , pp. e1000477
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3    Marchini, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.