Biomacromolecular Logic Devices Based on Simultaneous Electrocatalytic and Electrochemiluminescence Responses of Ru(bpy)32+ at Molecularly Imprinted Polymer Film Electrodes

Journal of Physical Chemistry C

Volumn 119, Issue 34, 2015, Pages 20003-20010

  Lian, Wenjing ^a   Yu, Xue ^a   Wang, Lei ^a   Liu, Hongyun ^a  

^a BEIJING NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER CIRCUITS; DNA; ELECTRODES; EMITTER COUPLED LOGIC CIRCUITS; IRON COMPOUNDS; LOGIC GATES; ORGANOMETALLICS; POLYMER FILMS; SEMICONDUCTING FILMS;

BOOLEAN LOGIC DEVICES; CYCLIC VOLTAMMETRIC; ELECTROCATALYTIC; ELECTROCHEMILUMINESCENCE; FUNCTIONAL DEVICES; MOLECULARLY IMPRINTED POLYMER FILMS; O- PHENYLENEDIAMINE; TEMPLATE MOLECULES;

RUTHENIUM COMPOUNDS;

EID: 84940488008     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/acs.jpcc.5b06456     Document Type: Article

References (59)

1. Katz, E.; Privman, V. Enzyme-Based Logic Systems for Information Processing Chem. Soc. Rev. 2010, 39, 1835-1857 10.1039/b806038j
2. Wang, J.; Katz, E. Digital Biosensors with Built-in Logic for Biomedical Applications-Biosensors Based on a Biocomputing Concept Anal. Bioanal. Chem. 2010, 398, 1591-1603 10.1007/s00216-010-3746-0
3. Willner, I.; Shlyahovsky, B.; Zayats, M.; Willner, B. DNAzymes for Sensing, Nanobiotechnology and Logic Gate Applications Chem. Soc. Rev. 2008, 37, 1153-1165 10.1039/b718428j
4. Zhou, M.; Dong, S. Bioelectrochemical Interface Engineering: Toward the Fabrication of Electrochemical Biosensors, Biofuel Cells, and Self-Powered Logic Biosensors Acc. Chem. Res. 2011, 44, 1232-1243 10.1021/ar200096g
5. Miyamoto, T.; Razavi, S.; DeRose, R.; Inoue, T. Synthesizing Biomolecule-Based Boolean Logic Gates ACS Synth. Biol. 2013, 2, 72-82 10.1021/sb3001112
6. Ma, D.; He, H.; Ma, V. P.; Chan, D. S.; Leung, K.; Zhong, H.; Lu, L.; Mergny, J.; Leung, C. Label-Free Sensing of pH and Silver Nanoparticles Using an "OR" Logic Gate Anal. Chim. Acta 2012, 733, 78-83 10.1016/j.aca.2012.04.041
7. Ma, D.; He, H.; Chan, D. S.; Leung, C. Simple DNA-Based Logic Gates Responding to Biomolecules and Metal Ions Chem. Sci. 2013, 4, 3366-3380 10.1039/c3sc50924a
8. Ma, D.; Lin, S.; Lu, L.; Wang, M.; Hu, C.; Liu, L.; Ren, K.; Leung, C. G-Quadruplex-Based Logic Gates for HgII and AgI Ions Employing a Luminescent Iridium(III) Complex and Extension of Metal-Mediated Base Pairs by Polymerase J. Mater. Chem. B 2015, 3, 4780-4785 10.1039/C5TB00718F
9. Wang, M.; Zhang, G.; Zhang, D. Enzyme-Driven I-Motif DNA Folding for Logic Operations and Fluorescent Biosensing Chem. Commun. 2015, 51, 3812-3815 10.1039/C4CC09905B
10. Zadegan, R. M.; Jepsen, M. D. E.; Hildebrandt, L. L.; Birkedal, V.; Kjems, J. Construction of a Fuzzy and Boolean Logic Gates Based on DNA Small 2015, 11, 1811-1817 10.1002/smll.201402755
11. He, Y.; Chen, Y.; Li, C.; Cui, H. Molecular Encoder-Decoder Based on an Assembly of Graphene Oxide with Dye-Labelled DNA Chem. Commun. 2014, 50, 7994-7997 10.1039/c4cc01242a
12. Orbach, R.; Remacle, F.; Levine, R. D.; Willner, I. DNAzyme-Based 2:1 and 4:1 Multiplexers and 1:2 Demultiplexer Chem. Sci. 2014, 5, 1074-1081 10.1039/c3sc52752b
13. Arugula, M. A.; Bocharova, V.; Halámek, J.; Pita, M.; Katz, E. Enzyme-Based Multiplexer and Demultiplexer J. Phys. Chem. B 2010, 114, 5222-5226 10.1021/jp101101b
14. Jung, C.; Ellington, A. D. Diagnostic Applications of Nucleic Acid Circuits Acc. Chem. Res. 2014, 47, 1825-1835 10.1021/ar500059c
15. Amir, Y.; Ben-Ishay, E.; Levner, D.; Ittah, S.; Abu-Horowitz, A.; Bachelet, I. Universal Computing by DNA Origami Robots in a Living Animal Nat. Nanotechnol. 2014, 9, 353-357 10.1038/nnano.2014.58
16. Huang, W.; Luo, H.; Li, N. Boolean Logic Tree of Graphene-Based Chemical System for Molecular Computation and Intelligent Molecular Search Query Anal. Chem. 2014, 86, 4494-4500 10.1021/ac5004008
17. Zhou, S.; Du, X.; Cui, F.; Zhang, X. Multi-Responsive and Logic Controlled Release of DNA Gated Mesoporous Silica Vehicles Functionalized with Intercalators for Multiple Delivery Small 2014, 10, 980-988 10.1002/smll.201302312
18. Wu, L.; Ren, J.; Qu, X. Target-Responsive DNA-Capped Nanocontainer Used for Fabricating Universal Detector and Performing Logic Operations Nucleic Acids Res. 2014, 42, e160 10.1093/nar/gku858
19. Bhowmik, S.; Das, R. N.; Parasar, B.; Dash, J. pH Dependent Multifunctional and Multiplyconfigurable Logic Gate Systems Based on Small Molecule G-Quadruplex DNA Recognition Chem. Commun. 2013, 49, 1817-1819 10.1039/c3cc38888c
20. Chen, Y.; Song, Y.; Wu, F.; Liu, W.; Fu, B.; Feng, B.; Zhou, X. A. DNA Logic Gate Based on Strand Displacement Reaction and Rolling Circle Amplification, Responding to Multiple Low-Abundance DNA Fragment Input Signals, and Its Application in Detecting MiRNAs Chem. Commun. 2015, 51, 6980-6983 10.1039/C5CC01389E
21. Chen, J.; Zeng, L. Enzyme-Amplified Electronic Logic Gates Based on Split/Intact Aptamers Biosens. Bioelectron. 2013, 42, 93-99 10.1016/j.bios.2012.10.030
22. Janssen, B. M. G.; van Rosmalen, M.; van Beek, L.; Merkx, M. Antibody Activation Using DNA-Based Logic Gates Angew. Chem., Int. Ed. 2015, 54, 2530-2533 10.1002/anie.201410779
23. Gao, W.; Zhang, L.; Zhang, Y.; Liang, R.; Qiu, J. DNA Colorimetric Logic Gates Based on Triplex-Helix Molecular Switch J. Phys. Chem. C 2014, 118, 14410-14417 10.1021/jp503608t
24. Guo, J.; Han, L.; Bao, X.; Du, Z.; Wang, T.; Yang, R. Multiple Logic Functions Based on Small Molecular Fluorene Derivatives and Their Application in Cell Imaging J. Phys. Chem. C 2014, 118, 9368-9376 10.1021/jp501756t
25. Zhang, L.; Zhang, Y.; Liang, R.; Qiu, J. Colorimetric Logic Gates Based on Ion-Dependent DNAzymes J. Phys. Chem. C 2013, 117, 12352-12357 10.1021/jp4027892
26. Liu, S.; Wang, L.; Lian, W.; Liu, H.; Li, C.-Z. Logic Gate System with Three Outputs and Three Inputs Based on Switchable Electrocatalysis of Glucose by Glucose Oxidase Entrapped in Chitosan Films Chem.-Asian J. 2015, 10, 225-230 10.1002/asia.201402927
27. Li, T.; Ackermann, D.; Hall, A. M.; Famulok, M. Input-Dependent Induction of Oligonucleotide Structural Motifs for Performing Molecular Logic J. Am. Chem. Soc. 2012, 134, 3508-3516 10.1021/ja2108883
28. Orbach, R.; Remacle, F.; Levine, R. D.; Willner, I. Logic Reversibility and Thermodynamic Irreversibility Demonstrated by DNAzyme-Based Toffoli and Fredkin Logic Gates Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 21228-21233 10.1073/pnas.1219672110
29. Miao, W. J. Electrogenerated Chemiluminescence and Its Biorelated Applications Chem. Rev. 2008, 108, 2506-2553 10.1021/cr068083a
30. Li, X.; Sun, L.; Ding, T. Multiplexed Sensing of Mercury(II) and Silver(I) Ions: A New Class of DNA Electrochemiluminescent-Molecular Logic Gates Biosens. Bioelectron. 2011, 26, 3570-3576 10.1016/j.bios.2011.02.003
31. Liu, S.; Li, M.; Yu, X.; Li, C.-Z.; Liu, H. Biomacromolecular Logic Gate, Encoder/Decoder and Keypad Lock Based on DNA Damage with Electrochemiluminescence and Electrochemical Signals as Outputs Chem. Commun. 2015, 51, 13185-13188 10.1039/C5CC04412J
32. Haupt, K.; Mosbach, K. Molecularly Imprinted Polymers and Their Use in Biomimetic Sensors Chem. Rev. 2000, 100, 2495-2504 10.1021/cr990099w
33. Wu, B.; Wang, Z.; Xue, Z.; Zhou, X.; Du, J.; Liu, X.; Lu, X. A Novel Molecularly Imprinted Electrochemiluminescence Sensor for Isoniazid Detection Analyst 2012, 137, 3644-3652 10.1039/c2an35499c
34. Li, J.; Li, S.; Wei, X.; Tao, H.; Pan, H. Molecularly Imprinted Electrochemical Luminescence Sensor Based On Signal Amplification for Selective Determination of Trace Gibberellin A3 Anal. Chem. 2012, 84, 9951-9955 10.1021/ac302401s
35. Pilehvar, S.; Mehta, J.; Dardenne, F.; Robbens, J.; Blust, R.; De Wael, K. Aptasensing of Chloramphenicol in the Presence of Its Analogues: Reaching the Maximum Residue Limit Anal. Chem. 2012, 84, 6753-6758 10.1021/ac3012522
36. Rezaei, B.; Boroujeni, M. K.; Ensafi, A. A. Fabrication of DNA, o-phenylenediamine, and Gold Nanoparticle Bioimprinted Polymer Electrochemical Sensor for the Determination of Dopamine Biosens. Bioelectron. 2015, 66, 490-496 10.1016/j.bios.2014.12.009
37. 2+ as a Molecular Encoder-Decoder Angew. Chem., Int. Ed. 2009, 48, 8516-8518 10.1002/anie.200904764
38. Cao, W. D.; Ferrance, J. P.; Demas, J.; Landers, J. P. Quenching of the Electrochemiluminescence of Tris(2,2′-bipyridine)ruthenium(II) by Ferrocene and Its Potential Application to Quantitative DNA Detection J. Am. Chem. Soc. 2006, 128, 7572-7578 10.1021/ja060162g
39. 2+-Doped Silica Nanoparticles Electrochemiluminescence by Ferrocene Sens. Actuators, B 2014, 191, 377-383 10.1016/j.snb.2013.10.020
40. Wang, T.; Fan, S.; Erdmann, R.; Shannon, C. Detection of Ferrocenemethanol and Molecular Oxygen Based on Electrogenerated Chemiluminescence Quenching at a Bipolar Electrode Langmuir 2013, 29, 16040-16044 10.1021/la4037698
41. Malitesta, C.; Losito, I.; Zambonin, P. G. Molecularly Imprinted Electrosynthesized Polymers: New Materials for Biomimetic Sensors Anal. Chem. 1999, 71, 1366-1370 10.1021/ac980674g
42. Tiwari, A.; Deshpande, S. R.; Kobayashi, H.; Turner, A. P. F. Detection of P53 Gene Point Mutation Using Sequence-Specific Molecularly Imprinted PoPD Electrode Biosens. Bioelectron. 2012, 35, 224-229 10.1016/j.bios.2012.02.053
43. Karimian, N.; Vagin, M.; Zavar, M. H. A.; Chamsaz, M.; Turner, A. P. F.; Tiwari, A. An Ultrasensitive Molecularly-Imprinted Human Cardiac Troponin Sensor Biosens. Bioelectron. 2013, 50, 492-498 10.1016/j.bios.2013.07.013
44. Smith, B. C. Infrared Spectral Interpretation: A Systematic Approach; CRC Press: New York, 1999.
45. Stuart, B. H. Infrared Spectroscopy: Fundamentals and Applications; Wiley Press: New York, 2004.
46. Prunə, A.; Braînzoi, F. Electrochemical Activity and Microscopy of Electrosynthesised Poly(o-phenylenediamine) Nanotubes J. Polym. Res. 2012, 19, 9879-9886 10.1007/s10965-012-9879-4
47. Gu, B.; Zhong, H.; Zhang, L.; Cheng, Z.; Wang, Y.; Li, X.; Xu, J.; Yao, C. Attapulgite Clay Combined with Tris(2,2′-bipyridine)ruthenium(II) for the Enhancement of the Electrogenerated Chemiluminescence Sensing Int. J. Electrochem. Sci. 2012, 7, 6202-6213
48. Su, M.; Liu, S. Q. Solid-State Electrochemiluminescence Analysis with Coreactant of the Immobilized Tris(2,2′-bipyridine)ruthenium Anal. Biochem. 2010, 402, 1-12 10.1016/j.ab.2010.03.027
49. Wang, Q.; Paim, L. L.; Zhang, X.; Wang, S.; Stradiotto, N. R. An Electrochemical Sensor for Reducing Sugars Based on a Glassy Carbon Electrode Modified with Electropolymerized Molecularly Imprinted Poly-o-phenylenediamine Film Electroanalysis 2014, 26, 1612-1622 10.1002/elan.201400114
50. Lian, W.; Liu, S.; Wang, L.; Liu, H. A Novel Strategy to Improve the Sensitivity of Antibiotics Determination Based on Bioelectrocatalysis at Molecularly Imprinted Polymer Film Electrodes Biosens. Bioelectron. 2015, 73, 214-220 10.1016/j.bios.2015.06.006
51. Alexander, C. J.; Richter, M. M. Measurement of Fatty Amine Ethoxylate Surfactants Using Electrochemiluminescence Anal. Chim. Acta 1999, 402, 105-112 10.1016/S0003-2670(99)00535-8
52. 2+ and Oxalate or Organic Acids J. Am. Chem. Soc. 1981, 103, 512-516 10.1021/ja00393a006
53. Wei, H.; Du, Y.; Kang, J.; Wang, E. Label Free Electrochemiluminescence Protocol for Sensitive DNA Detection with a Tris(2,2′-bipyridine)ruthenium(II) Modified Electrode Based on Nucleic Acid Oxidation Electrochem. Commun. 2007, 9, 1474-1479 10.1016/j.elecom.2007.01.053
54. Bertoncello, P.; Forster, R. J. Nanostructured Materials for Electrochemiluminescence (ECL)-Based Detection Methods: Recent Advances and Future Perspectives Biosens. Bioelectron. 2009, 24, 3191-3200 10.1016/j.bios.2009.02.013
55. Cannes, C.; Kanoufi, F.; Bard, A. J. Cyclic Voltammetry and Scanning Electrochemical Microscopy of Ferrocenemethanol at Monolayer and Bilayer-Modified Gold Electrodes J. Electroanal. Chem. 2003, 547, 83-91 10.1016/S0022-0728(03)00192-X
56. de Silva, A. P.; Uchiyama, S. Molecular Logic and Computing Nat. Nanotechnol. 2007, 2, 399-410 10.1038/nnano.2007.188
57. Mano, M. M.; Ciletti, M. D. Digital Design, 4 th ed.; Prentice Hall: Englewood Cliffs, NJ, 2006.
58. Erbas-Cakmak, S.; Bozdemir, O. A.; Cakmak, Y.; Akkaya, E. U. Proof of Principle for a Molecular 1:2 Demultiplexer to Function as an Autonomously Switching Theranostic Device Chem. Sci. 2013, 4, 858-862 10.1039/C2SC21499G
59. Amelia, M.; Baroncini, M.; Credi, A. A Simple Unimolecular Multiplexer/Demultiplexer Angew. Chem. 2008, 120, 6336-6339 10.1002/ange.200802018